Geospiza fortis (medium ground-finch): 102042721
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Entry
102042721 CDS
T03755
Symbol
DHX36
Name
(RefSeq) DEAH-box helicase 36
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
gfr
Geospiza fortis (medium ground-finch)
Pathway
gfr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102042721 (DHX36)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gfr03019
]
102042721 (DHX36)
03012 Translation factors [BR:
gfr03012
]
102042721 (DHX36)
Enzymes [BR:
gfr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
102042721 (DHX36)
Messenger RNA biogenesis [BR:
gfr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
102042721 (DHX36)
Translation factors [BR:
gfr03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
102042721 (DHX36)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
DEAD
HA2_C
Helicase_C
HA2_N
AAA_22
nSTAND3
ATPase
AAA_19
Sir1
NPHP3_N
AAA_23
Motif
Other DBs
NCBI-GeneID:
102042721
NCBI-ProteinID:
XP_005419119
UniProt:
A0A6I9HFL0
LinkDB
All DBs
Position
Un
AA seq
918 aa
AA seq
DB search
MWERAVVRMDERREEQIVQLLNSVQTKNDKEQEAMSWWSGDEEGPAPEQPAKVKPNAEKA
PVRQTPAWEKTSLDLDVEFLCEKNEQDADLDEQLKEELMKKRSDPRYIEMQRFREKLPSY
GMREELVKLINSNRVTVISGETGCGKTTQVTQFILDDHIERGLGSTCRIVCTQPRRISAI
SVAERVAAERAESCGNGRSTGYQIRLQSRLPRKQGSILYCTTGIVLQWLQSDKHLSSISH
VVLDEIHERNLQSDVLMSIIKDLLNVRLDLKVILMSATLNAEKFSEYFDHCPMIHIPGFT
FPVVEYLLEDVIEKLRYSPEKTDRRLHWRRGFMQGHMSRPEKEEKEEIYRQQWPGYLRQL
QGRYSASTISALEMMDDDKVDLDLVAALIRHIVLEEEDGAILVFLPGWDNISTLHELLMS
QVMFKSDRFIIIPLHSLMPTVNQTQVFKKTPPGVRKIVIATNIAETSITIDDVVFVIDGG
KIKETHFDTQNNISTMAAEWVSKANAKQRKGRAGRVQPGHCYHLYNGLRASLLDDYQLPE
ILRTPLEELCLQIKILRLGGIAYFLSKLMDPPCRDAVMLAINHLMELNALDRQEELTPLG
VHLARLPVEPHIGKMILFGALFCCLDPVLTIAASLSFKDPFVIPLGKEKIADARRKELSK
NSKSDHLTVVNAFTGWEEARSCGFRNEKDYCWEYFLSSNTMQMLHNMKGQFAEHLLAAGF
VNSRNPKDPKSNTNSGNEKLLKAVICAGLYPKVAKIRPSFSKKRKMVKVCTKTDGSVNIH
PKSVNVEETEFHYNWLVYHLKMRTSSIYLYDCTEVSPYCLLFFGGDISIQKDKDQDTIAV
DEWIVFQSPEKIANLVKKLRKELDDLLQEKIESPHPVDWDDIKSRDTAVLTAIIDLITTQ
ENEGVRNFAPRFQSERYS
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atgtgggagagagctgtggtgcgcatggacgagcgcagggaagagcaaattgtgcagctg
ctgaattctgtccagactaaaaacgacaaagagcaagaagccatgtcctggtggtccggg
gacgaagaaggccctgctccagaacagcctgccaaagtgaaaccaaatgctgagaaagct
cctgtaagacagacaccagcctgggaaaaaacatccctggatttggatgtggaattcctc
tgtgaaaaaaatgagcaggatgctgatttagatgagcaacttaaagaagagttaatgaag
aagagatctgatcccagatatattgaaatgcagagattccgagagaagctgccctcatat
gggatgagagaggagctggtgaagctgatcaacagcaaccgcgtgacggtgatcagcggc
gagacgggctgcggcaaaaccacgcaggtgacacagttcatcctggacgaccacatcgag
cgtggcctgggctccacctgcaggatcgtgtgcacgcagccccgcaggatcagcgccatc
tccgtggctgagagagtggctgctgagagggcagagagctgtggcaatggcaggagcacg
gggtaccagatccgcctgcagagtcgcttgccaaggaaacaaggttcaattttgtactgt
accacaggaattgtcctgcagtggctccagtcagataagcacttatccagcattagtcat
gtagttcttgatgaaatccatgaaagaaatcttcaatcagatgttttaatgagcattatt
aaagatcttctgaatgttcggctggatctgaaagtcatactgatgagtgctactttaaat
gcagagaagttttccgagtactttgaccattgcccaatgattcacatccctgggttcact
ttcccagtggtggaatatctgctcgaagatgtcattgagaaattgaggtactccccggag
aagacggaccgccggctgcactggaggaggggcttcatgcagggccacatgagcaggcca
gagaaggaggagaaggaggagatctacaggcagcagtggccaggctacctaaggcagctg
cagggcaggtattcagcaagcacaatcagtgccctggaaatgatggacgatgacaaggtg
gacctggaccttgtagcagcactgatcagacacattgtgctggaagaggaggatggtgca
attctggtgtttctgccaggctgggataacatcagcactttgcatgagctcttgatgtct
caagtcatgtttaagtcagataggtttattatcatccctttgcattcactgatgcctact
gttaaccagactcaggtgttcaagaagacgccgccaggagtgaggaaaattgtgattgca
accaacattgcagaaaccagcatcacaattgatgacgtcgtgttcgttatagatgggggg
aaaataaaggagactcactttgacacccagaacaacatcagcaccatggcagcagagtgg
gtcagcaaagccaatgccaagcagaggaaggggcgagcaggaagggttcagccaggccac
tgttaccatctgtacaacgggctgcgtgccagcctgctggatgattatcagttaccagag
atcctgaggacacccttggaagaactctgcttacaaatcaagatcctgaggcttggtgga
attgcctattttctgagcaaactgatggaccccccctgtcgtgatgctgtgatgttggcc
ataaatcacctcatggagctgaatgctctggacaggcaggaggagctgactcccctgggt
gtgcacctggcacggctgcccgtggagccacacattgggaagatgatcctgtttggagcc
ttgttctgctgcctggaccccgtgctgaccattgcagccagcctcagcttcaaggaccct
ttcgtcatccctctgggcaaagagaaaatcgcagatgcaagaagaaaggagctgtcaaag
aactcaaaaagcgaccatctgactgtggtgaatgccttcactggctgggaagaggctcgg
agttgtggtttcaggaacgagaaggactattgctgggaatatttcctgtcctcaaatacc
atgcagatgctgcataacatgaaggggcagtttgctgagcatctccttgcagctggattt
gtgaatagtagaaaccccaaggatcccaaatctaacaccaactcaggtaatgagaagctg
ctcaaagcagtcatctgtgctggcctctaccccaaagtggcaaagatccggcccagcttc
agcaaaaagagaaaaatggtgaaagtttgcaccaagacagatggatcagttaatatccat
cccaaatcagtgaatgtggaggagacagagttccactataactggctggtgtaccatttg
aagatgaggaccagcagcatttacctgtatgattgtacggaggtgtctccatactgcctt
ttgttctttggaggggatatatccattcagaaggataaggaccaggacaccatcgctgtg
gatgagtggattgttttccagtctccagaaaaaatagcaaacttggttaagaaattgaga
aaagaactggatgatcttctacaagagaaaatagagagcccccatcccgtggactgggat
gatataaaaagcagggacacagcagtgctgacggcgattatagacttgatcaccacgcag
gagaacgagggcgtcaggaacttcgcgccgcgcttccagagcgagcgctacagctga
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