Geospiza fortis (medium ground-finch): 102043100
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Entry
102043100 CDS
T03755
Symbol
COPA
Name
(RefSeq) coatomer protein complex subunit alpha
KO
K05236
coatomer subunit alpha
Organism
gfr
Geospiza fortis (medium ground-finch)
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gfr04131
]
102043100 (COPA)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gfr04147
]
102043100 (COPA)
Membrane trafficking [BR:
gfr04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
102043100 (COPA)
Exosome [BR:
gfr04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
102043100 (COPA)
Exosomal proteins of bladder cancer cells
102043100 (COPA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
WD40
WD40_Prp19
TPR_COPA_B
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
Beta-prop_TEP1_C
Beta-prop_TEP1_2nd
WD40_CDC20-Fz
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
ANAPC4_WD40
Beta-prop_CAF1B_HIR1
EIF3I
WD40_RFWD3
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_EIPR1
Motif
Other DBs
NCBI-GeneID:
102043100
NCBI-ProteinID:
XP_014166733
LinkDB
All DBs
Position
Un
AA seq
1066 aa
AA seq
DB search
VWNYKLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRVWNWQSRTCVWFFPGLRK
KNLSPGAVESDVRGITGVDLFGTTDAVVKHVLEGHDRGVNWAAFHPSMPLIVSGADDRQV
KIWRMNESKAWEVDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRR
DHDRFWVLAAHPNLNLFAAGEPRSSGWEFPKFQLGVPEFRLGIPEFCGSKFPVFSMSYNP
AENSVLLCTGKRSSGLTAVWVARNRFAVLDRMHSILIKNLKNEITKKVPVPNCDEIFYAG
TGNLLLRDSDSITLFDVQQKRTLASVKISKVKYVIWSADMSHVALLAKHAILICNRKLES
LCQIHENIRVKSGAWDESGVFIYTTSNHIKYAVTSGDHGIIRTLDLPIYVTRVKGNNVYC
LDRECRPRVLTIDPTEFRFKLALINRKYDEVLHMVRNAKLVGQSIIAYLQRKGYPEVALH
FVKDEKTRFSLALECGNIEIALEAAKALDDKGCWEKLGEVALLQGNHQVVEMCYQRTKNF
DRLSFLYLITGNLEKLRKMMKIAEIRKDMSGHYQNALYLGDVAERVRILRNCGQKSLAFL
TAATHGLDEEAESLRESFDPEKETIPAVDPEARLLQPPTPRCDNTVAEWGFPLMESFSKG
LSLLFFSGKGGALAADIDIDTVGTEGWGEDAELQLDEDGFVDAGEGFGEEGTGKGQEEGG
GWEVEEDLDLPPELDVPAGPAGTAEDGFFVPPTKGTSPAQVWCNNSQLPVDHILAGSFET
AMRLLHDQVGVTNFGPYKQLFLQTFSRGRTTFQALPSLPAMYGFPHRNWKEAGLKNALPA
VGLKLNDLIQRLQLCYQLTTAGKFEEAVEKFRLILLSVPLLVVDNKQEIAEAQQLVAICR
EYIVGLSMEIERKKLPKETLEQQKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNF
KSAATFARRLLELGPKPEVAQQTRKILAACEKNPVASHQLNYDQHNPFDICAASYRPIYR
GKAVEKCPLSGACYSPEFRGQICRVTTVTEIGKDVLGLRISPLQFR
NT seq
3201 nt
NT seq
+upstream
nt +downstream
nt
gtgtggaattacaaactgcggcgctgcctcttcaccctgctgggccacctggactacatc
cgcaccaccttcttccaccacgaatatccctggatcctgagcgcctccgacgaccaaacc
atccgcgtgtggaactggcagagccgcacctgcgtctggtttttcccggggctgcggaag
aagaacctgtcccccggggccgtggagtcggacgtgcgcggcatcaccggcgtcgatctg
ttcggcaccaccgacgccgtggtcaagcacgtgctggagggccacgaccggggggtgaac
tgggccgccttccacccctccatgcccctgatcgtgtccggggccgacgaccgccaggtc
aagatctggaggatgaacgaatccaaggcctgggaggtggacacctgccggggccactac
aacaacgtctcctgcgccgttttccacccgcgccaggagctgatcctcagcaactcggag
gacaagagcatccgcgtgtgggacatgtccaagcggaccggcgtccaaacgttccggcgc
gaccacgaccggttctgggtgctggcggcgcatcccaacctcaacctgttcgctgccggt
gagccccggagttccggctgggaattcccaaaattccagctgggagtccccgaattccgg
ctgggaatcccggaattctgcggctccaagttcccggttttcagcatgagctacaaccca
gctgagaattccgtgctgctctgcaccgggaagcgctcctcggggctcacggccgtgtgg
gtggcgcggaaccgattcgccgtcctggacaggatgcactcgatcctgatcaagaacctg
aagaacgagatcaccaagaaggttccggttcccaactgcgatgagattttctacgcgggc
accgggaatctgctcctgagggactccgactccatcaccctcttcgatgtccagcagaaa
aggactttggcctcggtgaagatctccaaggtgaagtacgtgatctggtcggccgacatg
tcccacgtggcgctgctggccaagcacgccatcctgatctgtaaccggaagctggagtcg
ctgtgccagatccacgagaacatccgggtcaagagcggcgcctgggacgagagcggcgtc
ttcatctacaccaccagcaaccacatcaaatacgccgtcacctcgggggatcacgggatc
atccgcacgctggacctgcccatctacgtgacgcgcgtgaagggcaacaacgtctattgc
ctggaccgggagtgccggccccgcgtgctcaccatcgaccccaccgagttccgcttcaaa
ctcgccctcatcaacaggaagtacgacgaggtgctgcacatggtgcggaacgccaagctg
gtggggcagtcgatcatcgcgtacctgcagcgcaaggggtaccccgaggtggccctgcac
ttcgtcaaggacgagaaaacgcgcttcagcctggccctggagtgcggcaacatcgagatc
gccctggaggcagccaaggccctggacgacaagggctgctgggagaagctgggcgaggtg
gccctgctgcaggggaaccaccaggtggtggagatgtgctaccagcgcaccaagaacttc
gaccgcctctccttcctctacctcatcaccggcaacctcgagaagctccgcaagatgatg
aagatcgcggagatccggaaggacatgagcgggcactaccagaacgcgctgtacctgggg
gacgtggccgagagggtgcggatcctgcggaactgcggccagaagtccctggcgttcctg
acggccgccacgcacgggctggacgaggaggctgagagcctgcgggaatccttcgatccc
gagaaggagacgatcccggccgtggatcccgaggcgcggctgctgcagcctcccacccca
agatgtgacaacacagtagcagagtggggttttccccttatggaatccttttccaagggt
ctttccctgttgtttttttcagggaaaggaggagccctggccgccgacatcgacattgac
accgtgggcaccgagggctggggcgaggacgccgagctgcagctggatgaagacggattc
gtggacgccggggaaggattcggagaggaaggaacgggaaaaggccaggaggaaggagga
ggatgggaggtggaggaagatttggatcttccccccgagctggatgtccccgccggccct
gcaggaacggctgaggacggattctttgtgccccccaccaaaggcaccagcccagcccag
gtgtggtgcaacaattcccagctccccgtggatcacatcctggcaggatccttcgagaca
gccatgaggctgctccacgaccaggtgggagtgaccaacttcgggccctacaagcagctc
ttcctgcagaccttctcgcggggcaggacgacattccaggcgcttcccagcctccccgcc
atgtacgggttcccgcaccgcaactggaaggaggccgggctgaagaacgcgctgccggcc
gtggggctgaagctgaacgacctgatccagcggctgcagctctgctaccagctgaccacg
gccggcaagttcgaggaggccgtggagaaattccggctgatcctgctcagcgtgcccctg
ctggtggtggacaacaagcaggagatcgccgaggcgcagcagctggtcgccatatgccgg
gaatacatcgtggggttgtccatggagatcgagaggaagaaactgcccaaggagacgctg
gagcagcagaagaggatctgtgagatggccgcctacttcacgcactccaacctgcagccc
gtgcacatgatcctggtgctccgcaccgccctcaatctcttcttcaagctcaagaacttc
aaaagcgccgccaccttcgcccggcgcctgctcgagctcggccccaagcccgaggtggcc
cagcagacgcggaagatcctggcggcgtgtgagaagaaccccgtcgccagccaccagctc
aactacgaccagcacaaccccttcgacatctgcgccgcctcctaccgccccatctaccgc
ggcaaagccgtggagaagtgtcccctcagcggggcctgctacagccccgagttccggggg
cagatctgccgcgtcaccacggtgacggagatcgggaaggacgtgctggggctgcgcatc
agccccctccagttccgctag
DBGET
integrated database retrieval system
