Geospiza fortis (medium ground-finch): 102043304
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Entry
102043304 CDS
T03755
Symbol
CACNA1B
Name
(RefSeq) calcium voltage-gated channel subunit alpha1 B
KO
K04849
voltage-dependent calcium channel N type alpha-1B
Organism
gfr
Geospiza fortis (medium ground-finch)
Pathway
gfr04010
MAPK signaling pathway
gfr04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
102043304 (CACNA1B)
04020 Calcium signaling pathway
102043304 (CACNA1B)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
gfr04040
]
102043304 (CACNA1B)
Ion channels [BR:
gfr04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
102043304 (CACNA1B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
GPHH
Ca_chan_IQ
PKD_channel
Motif
Other DBs
NCBI-GeneID:
102043304
NCBI-ProteinID:
XP_005423897
LinkDB
All DBs
Position
Un
AA seq
2238 aa
AA seq
DB search
MARFGDDLPTRYGGGGPAGAGRGSSRQGGPQAGQRMYKQSMAQRARTMALYNPIPVKQNC
FTVNRSLFIFSEDNVIRKYAKRITEWPPFEYMILATIIANCIVLALEQHLPDGDKTPMSE
RLDDTEPYFIGIFCFEAGIKIIALGFVFHKGSYLRNGWNVMDFVVVLTGILATAGTDFDL
RTLRAVRVLRPLKLVSGIPSLQVVLKSIMKAMVPLLQIGLLLFFAIVMFAIIGLEFYMGK
FHKTCFSNETGEEVGDFPCGEEPPARQCESGTTCREYWQGPNYGITNFDNILFAVLTVFQ
CITMEGWTDILYNTNDAAGNTWNWLYFIPLIIIGSFFMLNLVLGVLSGEFAKERERVENR
RAFLKLRRQQQIERELNGYLEWIFKAEEVMLAEEDKNAEEKSPLDVLKRAAIKKSKNDLI
HAEEGEDHFTDICSVGSPFARASLKSGKNESSSYFRRKEKMFRFFIRRMVKAQSFYWVVL
CVVALNTLCVAMVHYDQPEKLTTALYFAEFVFLGLFLTEMSLKMYGLGPRNYFHSSFNCF
DFGVIVGSIFEVIWAAVKPGTSFGISVLRALRLLRIFKVTKYWNSLRNLVVSLLNSMKSI
ISLLFLLFLFIVVFALLGMQLFGGQFNFQDETPTTNFDTFPAAILTVFQILTGEDWNAVM
YHGIESQGGVHSGMFSSIYFIVLTLFGNYTLLNVFLAIAVDNLANAQELTKDEEEMEEAT
NQKLALQKAKEVAEVSPMSAANISIAAKQQNSSKSKSVWEQRTSQIRMHNFRASCEALYN
ELDPEERVRYATTLHIRPDMKTHLDRPLVVEPRGEGRNNLTKLSPVDVQEVVEHPKPTSA
DGAEAPRKHHRHREKEKLGEQEKGDVTKEESGEAGAGTKEERHRQHRSRSKEGEGGSKEG
KSDRTRGQEGGKRHHRRGSVEEGAEKEHRRHRSHRHSSDRGSRSGNRDGEPGAKGDSGEE
PHRRHRLRNRALSTYESVEKDSGEKEGEAAEKEHRNHQPKENQCELEASGSGSGPGSVPV
HTLPSTYLQKVPEQPEDADNQKNVTRMIQPPLDKTTTVNIPVTITAPPGETTVIPMNNVE
FESKTEEKKDVDDLTKNGPKPILPYSSMFILSPTNPIRRLFHYIVNLRYFEMVILIVIAL
SSIALAAEDPVQAESPRNDALKYLDYIFTGVFTFEMVIKMIDLGLLLHPGSYFRDLWNIL
DFIVVSGALVAFAFSGTKGKDINTIKSLRVLRVLRPLKTIKRLPKLKAVFDCVVNSLKNV
LNILIVYMLFMFIFAVIAVQLFKGRFFYCTDESKELEKDCRGQYLDYEKNEVEAQPREWK
KYEFHYDNVLWALLTLFTVSTGEGWPTVLKHSVDATYEEQGPSPGYRMEMSIFYVVYFVV
FPFFFVNIFVALIIITFQEQGDKVMSECSLEKNERACIDFAISAKPLTRYMPQNKQSFQY
KMWKFVVSPPFEYFIMVMIALNTIVLMMKFYDAPEAYEEMLKCLNIVFTSMFSMECVLKI
IAFGVLNYFRDAWNVFDFVTVLGSITDILVTEIAVSTDNFINLSFLRLFRAARLIKLLRQ
GYTIRILLWTFVQSFKALPYVCLLIAMLFFIYAIIGMQVFGNIALDDETSINRHNNFRTF
LQALMLLFRSATGEAWHEIMLSCLSNRACDPLSGLTKKECGSDFAYFYFVSFIFLCSFLM
LNLFVAVIMDNFEYLTRDSSILGPHHLDEFVRVWAEYDPAACGRISYTDMYEMLRHMSPP
LGLGKKCPARVAYKRLVRMNMPISPEDLTVHFTSTLMALIRTALEIKLASGGVKQHQCDA
ELRKEISLVWPNLSQKTLDLLVPPHKPDEMTVGKVYAALMIFDFYKQNKNSREQVQPPGG
LCQPGPVSLFHPLKATLEQTQPAAFSNAKAFLRQKSSASLNNGGALPPPEGGIKESSSWG
TQRTQDVFYETRSPAFERGHSEEIPIERVSKXRGKGEVQVVEMKEISPTVANGEPQPGLE
SQGRAASMPRLAAETQPIPDTSPMKRSVSTLAPQRPHAMHLYEYSLERMPPEQGHHHHHH
RCHRRKEKKQKSLDRAAHHMADGQAVAQSGESSSKDKKQERGRSQERKQHSSSSSEKQRF
YSCDRYGSRDRAQPQSADQSRPTSPNGGPEHGPHRQGSGSVNGSPLLSTSGASTPCRGRR
QLPQTPLTPRPSITYKTANSSPVHFTTFQTPKFSPGRLSRGLSEHNALLAPRPRTRSPSR
RPWPPTRAAPQGLPTSPP
NT seq
6717 nt
NT seq
+upstream
nt +downstream
nt
atggctcggtttggggatgatctgccaacccgctatggaggtggagggccggccggggct
ggaagagggagcagccggcaaggtggcccccaagccggccaaaggatgtataaacagtcg
atggctcagagagccaggactatggctctctacaatcccatccctgtcaaacagaactgc
ttcacagtcaacagatccctcttcatcttcagtgaagataatgttatacggaaatacgcc
aagcgaataacggagtggcctccatttgaatacatgattttagctacaatcatagccaat
tgtattgtgctggctctggaacaacatttgccggatggagacaagacaccgatgtcagag
agattggacgacactgagccgtactttattggaatattttgttttgaagctggtatcaaa
atcatcgctctgggctttgtttttcacaaaggctcttacctgcgcaatggctggaacgtg
atggattttgtcgtggtcctcacagggattctggccactgctgggactgattttgacctg
cggaccctgcgagctgtgcgggtgctgcggcccctgaaactcgtgtcaggaatcccaagc
ctgcaggttgtcctcaagtccatcatgaaggccatggtgcccttgctgcagattgggctg
ctcctcttcttcgccatcgtgatgtttgccatcatcgggctggagttttacatgggcaag
ttccacaaaacctgcttttccaacgagacaggtgaggaggtgggggattttccctgtgga
gaggagcctcctgccaggcagtgtgagagcgggaccacgtgcagggagtactggcagggc
cccaactatggcatcaccaactttgacaacatcctcttcgccgtgctcaccgtcttccag
tgcatcaccatggagggctggaccgacatcctctacaatacaaacgacgctgcaggaaac
acctggaattggctttacttcatccctctcatcatcattggctctttcttcatgctcaac
ttggtgctgggcgtcctatcaggtgaatttgccaaggagcgggagcgggtggagaaccgc
cgggcgttcctgaagctccgcaggcagcagcagattgagcgcgagctcaacggctacctg
gagtggatcttcaaagcagaggaggtgatgctggccgaggaggacaagaacgccgaagag
aagtcccctctggacgtgttgaaaagagccgcaataaagaagagcaaaaatgacctgatt
catgcagaagaaggtgaggaccatttcacagacatttgctccgttgggtctccctttgcc
cgtgccagtttgaagagtgggaagaacgagagctcgtcctacttcaggaggaaggagaag
atgttccgcttcttcatccgccgcatggtgaaggctcagagcttctactgggtcgtgctc
tgcgtggtggccctcaacaccctctgtgtggccatggtgcactatgaccagcccgagaag
ctgaccactgctctctatttcgcagagtttgttttcctggggctgttcctcactgagatg
tctctgaagatgtatgggctggggccaaggaattacttccactcttcattcaactgcttt
gactttggggtgatcgtgggcagcatctttgaggtgatttgggctgcagtgaagccgggc
acctcctttggcatcagcgtcctgcgcgccctgcggctgctgaggatcttcaaagtgacc
aagtactggaattccctgaggaatctggtggtctccttgctgaactccatgaagtccatc
atcagtttgcttttcctgctgttcctgttcatcgtggtctttgctctgctggggatgcag
ctcttcggagggcagttcaatttccaagatgaaactccaaccacgaatttcgataccttc
cctgctgccatcctcacagtcttccagatcctgacgggcgaggactggaacgctgtgatg
taccacgggatagagtcacagggcggcgtccattccggaatgttctcctccatctacttc
atcgtgctcaccctgtttggtaactatactctcctgaacgtcttcttggccatcgctgtg
gacaacctggccaatgcccaggagctgaccaaggacgaggaggagatggaggaagccacc
aaccagaagctggccctgcagaaggccaaggaggtggctgaagtgagccccatgtcagca
gccaacatctccatagctgccaagcagcagaattcctccaaatccaagtcggtttgggag
cagaggacgagccagatccggatgcacaacttccgagccagctgtgaggcgctgtacaac
gagctggaccccgaggagcgcgtccgctacgccaccaccctgcacatccgtcccgacatg
aaaacccacctggaccggccgctggtcgtggagccccgcggcgaaggcaggaacaacctc
accaagctgagccccgtggatgtccaggaggtggtggagcaccccaaacccacctccgct
gatggggcagaagcgccaaggaagcaccaccggcatcgggagaaggagaagctgggagag
caggagaagggagatgtcaccaaggaggagagtggcgaggccggggctggcaccaaggag
gagcggcaccggcagcaccggagccgcagcaaggagggggaagggggcagcaaggaaggg
aaaagcgaccgtaccagggggcaggaagggggcaagaggcaccaccggcggggctcggtg
gaggaaggagccgagaaggaacaccggaggcaccgcagccaccggcactcctccgaccga
gggtcccgctccgggaacagggatggagagcccggggccaagggggacagcggagaggag
ccccaccggcggcaccggctcaggaacagggccctgtccacctacgagtccgtggagaag
gacagcggggagaaggagggggaggctgccgagaaggagcaccggaatcaccagcccaag
gagaaccagtgtgagctggaggccagtggcagtggcagtggccctggcagtgtccctgtg
cacaccctgcccagcacttacctgcagaaggtgcccgagcagccggaggatgccgacaac
cagaagaacgtgaccaggatgattcagccccccctggacaaaaccaccactgtgaacatc
cctgtcaccatcactgcccctccaggggaaaccactgtcattccaatgaacaacgtggag
tttgaaagcaaaacagaggagaagaaagatgtcgatgacctgaccaaaaatgggcctaaa
ccaatcctgccttacagctccatgttcatcctcagccccacaaacccgatccgccgcctg
ttccactacatcgtcaacctgcgctacttcgagatggtgatcctgatcgtcatcgccctc
agcagcatcgccctggctgcagaggaccctgtccaggctgagtctcccaggaatgatgct
ctgaaatacctggattatatatttacaggagtcttcacctttgagatggtgatcaagatg
attgacttggggctgctgctccaccctggctcctacttccgtgacctgtggaacatcctg
gacttcattgtggtcagtggggccctggtggcttttgccttctcaggaaccaaaggcaag
gacatcaacaccatcaagtccctgcgagtcctgcgtgtgctcaggcctctgaagaccata
aaacggctgccaaaactaaaggctgtctttgactgcgtggtgaactctctgaagaacgtc
ctcaacatcctcattgtttacatgctcttcatgttcatcttcgccgtcatcgccgtgcag
ctcttcaagggccgcttcttctactgcacggacgagtccaaggagctggagaaggactgc
aggggtcagtacctcgattatgaaaaaaatgaggtggaggcacagcccagggaatggaaa
aaatacgagttccactacgacaacgtgctctgggctctgctcacgctcttcaccgtgtcc
acaggggaagggtggccaactgtgctgaagcactcagtggatgccacctacgaggaacag
gggcccagccctggctacaggatggaaatgtccatcttttacgtggtgtattttgttgtc
ttcccttttttctttgtcaacatctttgtggcgttaatcatcatcaccttccaggagcaa
ggagataaagtgatgtcagagtgcagcctcgagaaaaacgagagggcctgcatagacttt
gccataagtgccaagcccctgacccgctacatgcctcagaacaagcaatccttccagtac
aagatgtggaaattcgtggtgtcccctccctttgagtactttatcatggtcatgattgct
ctcaacaccatcgtcctcatgatgaagttctatgatgctccagaagcatacgaagaaatg
ctgaaatgcctgaatattgtgtttacatccatgttttccatggaatgtgtgctgaagatc
attgcctttggtgtgctgaattatttccgagatgcctggaatgtctttgattttgtaaca
gtgttgggaagtattactgatattttagtaacagagattgcggtaagtacagacaacttc
atcaacctcagcttcctgcggctcttccgggcagccaggctcatcaagctcctccgccag
ggctacaccatccgcatcctgctctggacattcgtgcagtccttcaaggccttgccttat
gtgtgtctcctcattgcaatgctcttcttcatctatgccattattggcatgcaggtattt
gggaatattgccttagatgatgagacctccattaatcggcacaacaacttccgcaccttc
ctccaagctctgatgctcctgttcaggagcgctacaggggaagcctggcatgagatcatg
ttgtcctgcttgagcaacagagcctgtgaccccctctctggcctcaccaaaaaggaatgt
ggcagtgattttgcctatttctactttgtgtcgttcattttcctctgctccttcctgatg
ctgaacctgttcgtggcagtgatcatggacaatttcgagtacctgacacgggactcctcc
atcctcggcccgcaccacctggacgagttcgtgcgggtgtgggcagagtacgacccggca
gcctgcgggcgcatcagttacacagacatgtatgagatgctgagacacatgtccccacct
ctaggccttgggaagaaatgcccagctcgtgttgcctataagcgcctggtgaggatgaac
atgcccatctcccctgaggatttaactgtgcacttcacctccacgctgatggccctgatc
cgcacggccctggagatcaaactggcctcaggaggtgtgaagcagcaccagtgtgatgct
gagctgaggaaggagatctcgctggtctggcccaacctgtcccagaagactctggatttg
ctggtgcctcctcacaaacctgacgaaatgactgtggggaaggtctatgcagccctgatg
atatttgacttctacaagcagaataagaacagcagggagcaagtccagccccctgggggc
ctgtgccagcccgggccagtgtccctgttccaccccttgaaggccaccctggagcagacg
cagcccgcggccttcagcaacgccaaggccttcctgcgccagaagagctcggcctccctc
aacaacgggggagccctgccacccccagagggaggcatcaaagagtccagttcttggggg
acccagcgcacccaggacgtgttttatgaaaccaggagcccagcttttgagcgaggccac
tccgaggagatccccattgagagggtgagcaaatgaagggggaagggggaggtgcaggtg
gtagaaatgaaggagatcagccccacagttgccaatggagagccccagccaggcctggag
agccagggccgtgcagcctccatgccacgcctggctgctgaaacccagcccatcccggac
acgagccccatgaagcgctcggtctccacgctggccccgcagcgccctcacgccatgcac
ctctacgagtactccctggagcgcatgcctccggagcagggccaccaccaccaccaccac
cgctgccaccggcgcaaagagaagaagcagaagtccttggatagggccgcccatcacatg
gctgatggacaagctgtagcccagtctggagagtcttcttccaaggacaagaagcaggag
cgtggccgctcccaggagaggaagcagcactcctcctcctcctccgaaaagcagcgcttc
tactcctgcgaccgctacggcagccgagaccgtgcccagccccaatctgctgaccagagc
aggcccacctcacccaacgggggcccagagcacggcccacacagacagggcagtggttca
gttaatgggagccccttgctgtcgacatctggtgctagtaccccctgccggggtcggagg
cagctcccacagactccactgaccccacgccccagcatcacttacaagaccgctaactcc
tcgcccgtgcacttcaccactttccaaacccccaaattctccccgggccgcctgagccgc
gggctgtccgagcacaacgcgctgctcgcgccgcgcccgaggacacgctcaccttcgagg
aggccgtggccaccaactcgggccgctcctcaaggacttcctacgtctcctccctga
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integrated database retrieval system
