Geospiza fortis (medium ground-finch): 102043356
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Entry
102043356 CDS
T03755
Symbol
XRN2
Name
(RefSeq) 5'-3' exoribonuclease 2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
gfr
Geospiza fortis (medium ground-finch)
Pathway
gfr03008
Ribosome biogenesis in eukaryotes
gfr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
102043356 (XRN2)
09123 Folding, sorting and degradation
03018 RNA degradation
102043356 (XRN2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gfr03021
]
102043356 (XRN2)
03019 Messenger RNA biogenesis [BR:
gfr03019
]
102043356 (XRN2)
03009 Ribosome biogenesis [BR:
gfr03009
]
102043356 (XRN2)
03016 Transfer RNA biogenesis [BR:
gfr03016
]
102043356 (XRN2)
Transcription machinery [BR:
gfr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
102043356 (XRN2)
Messenger RNA biogenesis [BR:
gfr03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
102043356 (XRN2)
Ribosome biogenesis [BR:
gfr03009
]
Eukaryotic type
Pre-60S particles
RNases
102043356 (XRN2)
Transfer RNA biogenesis [BR:
gfr03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
102043356 (XRN2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
102043356
NCBI-ProteinID:
XP_014163157
LinkDB
All DBs
Position
Un
AA seq
937 aa
AA seq
DB search
MVELQSLSPLHPQAKECNGVKVPIDTSKPNPNEVEFDNLYLDMNGIIHPCTHPEDKPAPK
NEDEMMVAIFEYIDRIFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFRASKEGMEAAEEK
QKIRQEILAKGGFLPPEEVKERFDSNCITPGTEFMDNLAKCLRYYIADRLNSDPGWKNLT
VILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLGLATHEPNFTIIR
EEFKPNKPKPCALCNQMGHEVKDCQGLPREKQGKHDQFADTLPVSEQEFIFIRLCVLREY
LERELTMASLPFTFDFERSVDDWVFMCFFVGNDFLPHLPSLEIREGAIDRLVNIYKNVVH
KTGGYLTESGFVNLQRVQMIMLAVGEVEDSIFKKRKDDDDNFKRRQKEKRKRLKRDQPSF
IPGGQFSPQALGNRSSPQAICNPRQAAFEMRMHDRQNSTTSASPNTSLTPDSSPSLGGGI
KRKPEDSDSEPEPEDNIRLWETGWKQRYYKNKFDVDASDEKFRRKVVQSYVEGLCWVLRY
YYQGCASWNWYYPFHYAPFASDFEGIADMPSDFEKGSKPFKPLEQLMGVFPAASGNFLPP
TWRKLMTDPESSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPE
ETRRNSLGGDVLFVGKHHPLCDFIVEQYKTKNTEAVDIPPELCHGIQGKLTLNDNAVLPD
QVVQSPVPMLRDLTQNSAVSISFKDPQFAEDFVFKATVLPGAKKPAPVLKPGDWEKTNND
GRPWRPQLGFNRDRKPVHLDQSAFRTLGHTMPRDRGMPGMYPNPVPLGAYGSPYARPLMG
SQQQIPKLLSNLRPQESWRGPTPLFQQTPQRTAGAAPLLAWNRVMQSPNQFQPAQYQGMG
PMGYPQRPEDRMDRGRQAYGPGRPYPLPHPAGRYSWN
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atggttgagctgcaatccttgtccccactgcatccccaggccaaagagtgcaatggtgtc
aaggtccccattgacacaagcaagcccaaccccaacgaggtggagttcgacaacctctac
ctggacatgaacggcatcattcacccctgcacacacccagaggacaagccagcgcccaaa
aatgaagatgagatgatggtggcgatttttgagtatatcgacaggatcttcaacattgtg
agaccaaggagactcctttacatggccatagatggagtggccccacgtgccaaaatgaat
caacagcgatccaggagattcagagcctcaaaggagggcatggaagctgctgaggagaag
caaaaaatccgacaagaaattctggccaaaggtggctttctgcctccagaggaggtgaag
gagaggtttgacagcaactgcatcaccccgggaactgagtttatggacaatcttgctaaa
tgcctccgctattacatcgctgaccgcttgaacagcgacccgggctggaagaacctgaca
gttattttgtcagatgccagtgctcctggtgaaggggagcataaaatcatggattacatc
aggagacaaagagctcaacccaaccatgacccaaacactcaccactgtctgtgtggggct
gatgctgatctgatcatgcttggcttagctacacatgaaccaaacttcaccatcattagg
gaagagttcaaaccaaacaaacccaaaccatgtgctctctgtaaccagatgggacatgag
gttaaggattgccaaggtctgcccagagagaaacaaggaaagcacgatcagtttgccgac
accctgccggtctcagagcaagagttcatcttcatccgcctgtgtgtcctgcgcgagtac
ttggagagagagctcaccatggccagcttgcctttcacttttgattttgaaaggagtgtt
gatgactgggtcttcatgtgtttctttgtggggaatgacttcctccctcacctgccatct
ctggagatcagggagggagcaatcgatcgcttggtgaacatctataaaaacgtggtgcac
aaaaccgggggctacctgactgaaagtggttttgtgaacctgcagcgggtccagatgatc
atgctggctgttggggaagttgaagacagcattttcaaaaagaggaaagatgatgatgat
aactttaaaagacgacaaaaagaaaaaagaaagagattgaagagggatcagccttccttt
attcctggtggtcagttttcccctcaagccctgggaaatcgatccagccctcaggcaatc
tgtaaccctcgacaagctgcctttgagatgaggatgcacgacaggcagaactcgacaact
tcagcatctcccaacaccagcctgactcctgacagcagcccgtccctgggaggaggaatt
aagcggaaacctgaggacagtgacagtgaacctgagccagaggataatatcaggttgtgg
gagactggctggaagcagcgctactataaaaacaaattcgatgtggacgcctccgatgag
aaattccgccgcaaggttgtgcagtcctacgtggaagggctttgctgggttctcagatat
tattatcagggctgtgcatcctggaactggtattaccctttccactacgctccctttgcc
tcggacttcgagggtattgcagacatgccttcagactttgagaagggctccaaaccgttc
aagcctcttgagcagctgatgggggtgttcccggccgccagtggaaacttcctgccgcca
acgtggaggaaactcatgacagacccagaatcaagcatcattgacttctaccctgaagat
tttgctattgatttgaatgggaagaagtatgcttggcaaggtgtggcattgttgcccttt
gtggatgagcgacgcctcagagctgccctggaggaagtgtaccctgacctcactcctgaa
gagaccaggaggaacagccttggcggtgatgttctctttgtcgggaagcaccatcccctc
tgtgacttcattgtggagcagtacaagaccaagaacacagaggcagtggacatcccaccg
gagctgtgccacggcatccagggaaagctcaccctgaacgacaacgccgtcctgccagat
caggtggtgcagtctcctgttcccatgctgcgggatctgacacagaactctgcagtcagc
atctcattcaaagatccacaatttgctgaagactttgttttcaaggctacagtgttacct
ggggcaaagaaacctgctccagttctgaagccaggagactgggaaaaaaccaacaatgat
ggcaggccttggagaccacagcttggctttaacagggacaggaaaccagtgcatttggac
cagtcagcgttcagaaccttggggcacacaatgccaagggacaggggcatgccagggatg
tacccgaaccctgtgccgctcggagcctacggcagcccctacgccaggcccctcatgggc
agccagcagcagatccccaaactgctgtcaaatcttcggccccaggagtcctggagaggt
cccacgcccttgttccagcagacaccacaaagaaccgccggagctgctcctctcctcgcc
tggaaccgcgtgatgcagtccccaaaccagttccagccagcccagtaccagggcatgggg
cccatgggatacccccagagacccgaggaccgcatggacaggggcagacaggcgtacggc
cccgggaggccctacccgctcccacatcccgcaggaaggtacagctggaattag
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