Geospiza fortis (medium ground-finch): 102043466
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Entry
102043466 CDS
T03755
Symbol
DDX54
Name
(RefSeq) DEAD-box helicase 54
KO
K14808
ATP-dependent RNA helicase DDX54/DBP10 [EC:
5.6.2.7
]
Organism
gfr
Geospiza fortis (medium ground-finch)
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
gfr03009
]
102043466 (DDX54)
Enzymes [BR:
gfr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102043466 (DDX54)
Ribosome biogenesis [BR:
gfr03009
]
Eukaryotic type
Pre-60S particles
Helicases
102043466 (DDX54)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DBP10CT
ResIII
Motif
Other DBs
NCBI-GeneID:
102043466
NCBI-ProteinID:
XP_005421609
LinkDB
All DBs
Position
Un
AA seq
879 aa
AA seq
DB search
MGRERGGNGTRPGPSEACPCTPCPCAPCRCAGYCGPGVHVPVSTGPVSLVPRSPVPVFLV
PASPLPAFPAATEGDDGADADAELDTQAMVRAQNQKKKKSGGFQSMGLSYPVFKGIMKKG
YKVPTPIQRKTIPAILRGRDVVAMARTGSGKTACFLIPMFERLKAPSQAGPRALILSPTR
ELALQTLKFTKELGKFTGLKTALILGGDKMEDQFAALHENPDIIIATPGRLVHVAVEMKL
KLHTVEYVVFDEADRLFEMGFAEQLQEIIARLPDCHQTVLFSATLPKLLVEFARAGLTEP
MLIRLDVESKLSEQLKLVFFHVRGDDKPAVLLHLLRSVVKPQDQTVVFVATKHHTEYLRE
LLTAQGIRCTHIYSSLDQTARKINIAKFSQGKCPVLLVTDVAARGLDIPMLDNVINFSFP
AKGKLFLHRVGRVARAGRSGTAYSLVAPDEMPYVFDLHLFLGRPLVLAGAQEMPADAGGV
LGRVPQSLVDDEECLLLTDHESSLELRSLRRVADNAHKQYLRSRPGPSPESIKRAKDLDV
SQLGMHPLFRARFEDTELQRLKLVDSIKTYKSKATIFEINATSRTPASTVMRSKRRHDCA
LIEKFQRGQQEKRAAALKGQGMGPTPPEPQDGEGEQEDLQDVFSNVGGQKRKRGRGGEDG
TRKKPPACVGAALITPLGRLSVGGEGSAFEQQAAGAVLDLMGDENHNLNKNKQLLKWDRK
KKRFVGQTGQEDKKKVRTESGRYISSSYKNNLYEKWKQKYKVDERDEDEEGPRSREQFRG
KHRRGHGTGPGQPPAQGRVRSELRNKQQILKQHKKAAKQRFLCERKQVLCCMAGCILMWS
TFRDANSSSLLLILLPGVLCAGGNLRSALALPGCGATPV
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
atgggacgggagcggggtgggaacgggaccaggcccggcccgagcgaggcgtgtccctgc
accccgtgtccctgcgctccgtgccgctgcgccgggtactgtggccccggtgtccatgtg
ccggtgtccacaggaccggtgtccttagtgccaaggtcccctgtgcccgtattcctggtg
cctgcatccccactgcctgccttccctgctgccaccgagggggacgatggcgctgacgct
gatgctgagctggacactcaggccatggtgcgggcccagaaccagaagaagaagaaatcc
gggggtttccagtccatgggcctcagctaccctgtcttcaagggcatcatgaagaagggc
tacaaggtgcccacgcccatccagaggaagaccatccctgccatcctgcgtggccgggat
gtggtggccatggcccggacgggcagtgggaagacggcctgtttcctcatccccatgttc
gagcggctgaaggcgcccagccaggccgggccacgcgccctcatcctctcacccacccgg
gagctggccctgcagaccctcaagttcaccaaggagctgggcaagttcactggcttgaag
acagccctgatcctgggaggagacaagatggaggaccagtttgctgccctgcatgagaac
cctgacataatcatagccacccctgggcgcctggtgcacgtggcggtggagatgaagctg
aagctgcacactgtggagtacgtggtgttcgacgaggcagacaggctctttgagatgggc
tttgctgagcagctgcaggagatcattgcccggctgccagactgccaccagaccgtgctg
ttctccgccacgctgcccaagctgctcgtcgagtttgcccgggctggcctcactgagccc
atgctgatccgcctggacgtggagtccaagctgagtgagcagctcaagctggtgttcttc
catgtgcgtggggacgacaaaccggccgtgctgctccatctgctccgcagcgtggtgaaa
ccccaggaccagacagttgtctttgtggccaccaagcaccacacggagtatctgagggag
ctgctgacagcacagggcatccgctgcacccacatctacagctctctggaccagaccgcc
cgtaagatcaacattgccaagttctcccagggcaagtgcccggtgctgctggtcaccgac
gtggctgcccgggggctggacatccccatgctggacaacgtcatcaacttcagcttccct
gccaagggcaagctgttcctgcatcgtgtcggtcgtgtggcccgagctggccgcagtggc
actgcctactcgctggtggctcctgacgagatgccctacgtgttcgacctccacctcttc
ctggggcgcccacttgtcctcgctggagcccaggagatgcctgcagatgctggcggagtc
ctgggccgtgtcccgcagagcctggtggatgatgaggaatgcctgctgctgacggaccac
gagagctctctggagctgcgcagcctccgccgcgtcgccgacaacgcccacaagcagtac
ctgcgctcccggcccggcccctcgcccgagtccatcaagagggccaaggacctggatgtg
tcccagctgggcatgcaccccctcttcagagctcgctttgaagacactgagctgcagagg
ctgaagttggtggatagcattaaaacctacaagtccaaggcgaccatctttgagatcaac
gccacatcccggacaccagccagcaccgtgatgcgatcgaagcggcgccacgactgcgcc
ctgatcgagaagttccagcgcgggcagcaggagaagcgggcagcagcacttaaagggcag
gggatgggcccaacccctcccgagccccaggatggggaaggagagcaggaagacctccag
gacgtgttctccaatgtggggggccagaagcgaaaacggggccgaggaggagaagatggg
accaggaaaaaacccccagcctgtgtgggggctgctctcatcaccccccttggcaggctg
agcgtgggcggcgagggcagcgccttcgagcagcaggcggccggggccgtgctggatctc
atgggcgacgagaaccacaacctcaacaagaacaagcagctactcaagtgggaccgcaag
aagaagcggtttgtggggcagacaggccaggaggacaagaagaaggtgcggacagagagc
gggcgctacatcagcagctcctacaagaacaacctctatgagaagtggaagcagaagtac
aaggttgacgagcgggatgaggatgaggaagggccacgcagcagggagcagttcagaggg
aagcacaggcgtgggcacggcacaggccccgggcagcccccagcgcagggcagggtgcgc
tcggagctgaggaacaagcagcagatcctgaagcagcacaagaaggcggccaagcagcgc
ttcctatgcgagaggaagcaggtgctgtgctgcatggctgggtgtattttgatgtggagc
accttcagagatgccaacagcagctccctcctcctcatcctcctgcctggggtgctctgt
gcaggcgggaacctcaggagtgccctggccctgcctgggtgtggtgccaccccagtgtga
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