Geospiza fortis (medium ground-finch): 102043585
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Entry
102043585 CDS
T03755
Name
(RefSeq) probable ATP-dependent RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
gfr
Geospiza fortis (medium ground-finch)
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gfr03041
]
102043585
Enzymes [BR:
gfr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
102043585
Spliceosome [BR:
gfr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
102043585
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
OB_NTP_bind
HA2_C
Helicase_C
DEAD
R3H
AAA_19
HA2_N
nSTAND3
AAA_22
ATPase
Ank_2
PhoH
Ank_4
AAA_16
AAA_7
AAA_23
Ank
SRP54
ResIII
AAA_30
AAA_29
T2SSE
Sigma54_activat
Motif
Other DBs
NCBI-GeneID:
102043585
NCBI-ProteinID:
XP_014164265
LinkDB
All DBs
Position
Un
AA seq
1366 aa
AA seq
DB search
MEFPSSFTRTERAFVHRLCHSLGLISKSKGKGANRYLTVRKKDGSELKRAVMTCALTPGA
KHAVCTLIQNFPVTNKERTELLPKTEQGNAYAVESENKEVKTSGRLSDGIPQVPVKRGES
QFDSFRQSLPVFEKQEEIVKIIKDHKVVLIVGETGSGKTTQIPQFILDDCHKNGTPCRIV
CTQPRRLAALAVAERVAAERGEKIGQTIGYQIRLESRVSPKTLVTFCSNGILLRALMAGD
SALSTVTHVIVDEVHERDRFSDFLLTKLRDVLQSQANLKLIISSAALDADLFIRYFGCCP
VIHIQGRPFEVKELFLEDILRSTGYTNKEMVKYKKEKQQEEKQQSTLTEWCAARENDSKM
ESERPRFVPRVAEECSLLGDDGDTVFNQLTEKDANCLELWLIKEMDSCLSDIWLHKNIDA
FAQVFHLMLNENVSVDYRHSETSATALMIASGRGFLSQVEQLISMGASIHCKSSNGWMAV
DWAKHFGQTEVVDLLESYRYEYTDLGFGNLDESSLVRTSGSDLSAEDRELLTAYLHSFDD
EKVDLDLIMHLLYNICHSYETGAILIFLPGYDEIVSLRDRILFDDRRFADDAHRYQVFML
HSNMQTLDQKKVLKTPPSGVRKIILSTNVAETSITVSDVVFVIDSGKVKEKSFDALSCVT
MLKMVWISKASAIQRKGRAGRCQPGVCFRLFSRLRFENMLEFQTPELLRMPLQELCLHTK
LLAPINCSVVDFLMKAPDPPPALIVKNALQMLKTIDAMDPWEDLTELGYHLTELPVEPHL
GKMVLCAIVLKCLDPVLTIACALAYRDPFVLPTLASQKQAAMLCRKLFTAGTFSDHMVLL
RAFQAWQKAHSDGWERAFCEKNFLSQATMQIIVGMRAQLLSQLRASGFVRGRGGADIRVV
NANSENWAVVKAALVAGMYPNLVHVDRESLVLTAPKEKKVRFHPTSVLSQPQYKKIPPVN
GQTAAVQALPTDWLIYDEMTRAHRIANIRCCSVVTPITVALFCGPARLPSNALQASSSCQ
GIPDDSSDSEMEDRTTSNLSLLKLDEWLHLKLDSEAAGLLLQLRQKWHSLFLRRMRAPSK
SWSQADEAVVRAVVAVLTAEEQSAGLQQPSGIGQRPRRMDSEDHLVPSTWRRANTRRSTA
ETEFSDSSNAEKVLMRSTCPILHQPEKDERKNIMHSKQTSDDRSDRSSVKSADSSSFPSP
CASPSSTMSGKASKLPSPRKNMPVRYFIMKSSNLQNIEISQQKGIWSTMPSNEQKLNGAF
WKSSMVYLVFSVQGSGHFQGFARMCSSIGFEKSQDWGSAGFGGVFKVEWIRKESIPFQFA
HHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWDQIPLEXKNSTD
NT seq
4101 nt
NT seq
+upstream
nt +downstream
nt
atggagtttccgtcttctttcactagaaccgaaagagcatttgttcaccgtctctgtcat
tctcttggactgatatcgaagagtaaaggaaaaggagcaaatcgatacctaaccgtaaga
aaaaaggatggatcagaactaaaacgtgcagtaatgacttgtgccttaactcctggtgca
aaacacgctgtttgtactttaattcaaaattttccagtcacaaataaagaacgaacagaa
cttctgccaaagacagaacaaggaaatgcatatgctgttgaatctgaaaacaaagaagtg
aagacaagtggacgacttagtgatggtatcccccaggttcctgtgaaaagaggggaatca
cagtttgattctttcaggcaatcactaccagtttttgaaaaacaggaagaaattgttaaa
ataataaaggaccataaagttgttttgattgtaggagagactggatcaggaaaaactact
caaatccctcagtttattcttgatgactgtcacaaaaatggaactccctgccgtatagtt
tgcactcagccaagacgtttggcagcacttgctgtggctgaaagagtggcagcagaaaga
ggagaaaagattggccagacaattggttatcagatccgattagaaagcagggtttctcca
aagacgctggtaaccttttgctctaatggcatactgctccgtgcgttgatggcaggagac
agcgccctatcaaccgtgacacatgtcattgtggatgaagtacatgagagggataggttc
agtgacttcttgctaacaaaactgagagatgtgttgcaaagccaagctaatttaaaacta
attatttccagtgctgctctagacgcagacctctttattaggtattttggatgttgccca
gtaatacacatccaaggaagaccttttgaagttaaagagctgtttttggaggacatttta
cgaagtactgggtatacaaacaaagagatggtgaagtacaaaaaagagaagcagcaagaa
gaaaaacagcaaagcactcttactgagtggtgcgctgctcgagaaaatgatagtaagatg
gaatctgagagaccaaggtttgtcccaagggtagctgaagagtgtagtcttttgggtgat
gatggtgacacagtgttcaatcaactgactgaaaaagatgcaaattgccttgaactatgg
ttaataaaagaaatggattcttgtctttctgacatctggctgcataaaaatattgatgcc
tttgctcaggtgttccatctcatgttaaatgaaaatgtcagtgttgattataggcacagt
gaaaccagtgcgactgcactaatgattgcttcagggagaggctttttgagtcaagtagaa
cagttgatcagtatgggagcaagtatccactgcaaatcatctaatggctggatggctgtg
gactgggctaagcactttggacagacggaggttgttgatctgttggaatcctacagatat
gaatatactgacttaggatttggaaatctggatgaaagttccctggtccgaacaagtggt
agtgaccttagtgcagaggacagagaactgttgacagcttatcttcacagttttgatgat
gaaaaagtggatcttgaccttattatgcacttactttataacatctgtcatagttatgag
accggagcgattttaatatttcttcctggatatgatgagatagttagcctgagggaccgt
attctatttgatgacaggagatttgctgacgatgcgcacagataccaggttttcatgctt
cattcaaatatgcagactttggatcagaagaaagtacttaaaactccaccttctggtgtg
cgcaaaataattctttctacaaatgtagcagaaaccagcataacagtcagtgatgttgta
tttgttattgactcaggcaaggtgaaagagaagtcctttgatgcactgagttgtgttaca
atgctgaagatggtgtggatttcaaaagccagtgctatccagagaaaaggcagggctggg
cgctgtcagcctggagtctgttttcgtctcttcagtaggctccgatttgagaatatgttg
gaatttcagactccagaacttctaagaatgccacttcaggagctttgtttacacacaaaa
cttctggctccaattaattgttcagttgttgactttcttatgaaagctcctgatcctcca
ccagctttaattgtgaaaaatgctctgcaaatgctcaagactatagatgccatggaccct
tgggaagatctcactgaacttggttatcatctcactgaattgccagtggagccacacctt
ggtaaaatggtgttgtgcgccattgttttgaagtgcctggatcctgtcctgaccattgcc
tgtgctcttgcctaccgagacccttttgtgctgcccacgctggcctctcagaagcaggca
gccatgctgtgcaggaagcttttcactgcgggaaccttcagcgaccacatggtgcttctc
agggcttttcaggcatggcagaaggcgcacagtgatggctgggagagagccttctgtgaa
aagaacttcctgtctcaagccacaatgcaaatcatcgtaggaatgagagcacagttgctt
agccagcttagagcctcaggttttgttagaggcagaggaggagctgatattagagttgtt
aatgctaactctgaaaactgggctgtagttaaagctgccttagtggctgggatgtatccc
aatcttgtgcatgtagaccgagagagcctggttttaactgcaccaaaggagaagaaagtg
cgatttcatccaacctctgttcttagtcaacctcagtataaaaagattcccccagtgaat
ggccaaactgcagctgttcaggcactccctaccgactggctgatatatgatgaaatgacg
agagctcacaggatagcaaacatcaggtgctgttctgttgtaacacccatcactgtggct
ctcttctgtggaccagctaggttaccaagtaatgctttacaggcatcttcatcctgtcaa
ggtataccggatgatagcagtgacagtgagatggaggacagaacaacttctaatttatca
cttctgaagctagatgaatggctccacctcaaattggactctgaagctgctggcttgctg
ttgcaactcagacagaagtggcatagcttatttctgcgtcgcatgcgagctccttctaaa
tcatggtctcaagctgatgaagcagttgtaagagcagttgtagctgttttaactgctgaa
gaacagtctgcaggtttgcagcagccttcaggaattggtcagagaccaagacgtatggat
tctgaagatcatcttgtaccatctacatggaggagagctaacaccaggagaagtacagca
gaaactgaattctctgactcctctaatgctgaaaaagttctgatgagatctacatgtccc
atacttcatcagccagagaaggacgaacgaaaaaatattatgcactccaaacaaacttca
gacgacaggtcagatcgatcatcggtgaaatctgcagacagcagtagcttccctagcccc
tgtgctagtccatcctctacaatgtctggaaaggcttccaaattaccttcaccaagaaaa
aatatgccagttcggtactttataatgaaaagtagcaacttgcagaacattgagatttct
cagcagaagggtatatggtccactatgccaagtaatgaacaaaaactgaatggagccttt
tggaaaagcagcatggtttacttagtgttttctgttcaagggtctggacacttccagggt
tttgctagaatgtgttcatcaatagggtttgagaaaagtcaggactggggatctgctgga
tttggaggtgtatttaaagttgagtggatccgaaaagaaagcattcctttccagtttgca
catcatttgctcaacccttggaatgacaataagaaagtacaaataagcagagatggccag
gagctcgaaccacaggttggagagcagttgctgcagctttgggaccagattcctttggaa
tgaaaaaattcaactgattaa
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integrated database retrieval system
