Geospiza fortis (medium ground-finch): 102043834
Help
Entry
102043834 CDS
T03755
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
gfr
Geospiza fortis (medium ground-finch)
Pathway
gfr03020
RNA polymerase
gfr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
102043834
09124 Replication and repair
03420 Nucleotide excision repair
102043834
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gfr03021
]
102043834
03400 DNA repair and recombination proteins [BR:
gfr03400
]
102043834
Enzymes [BR:
gfr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
102043834
Transcription machinery [BR:
gfr03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
102043834
DNA repair and recombination proteins [BR:
gfr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
102043834
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
102043834
NCBI-ProteinID:
XP_014166924
UniProt:
A0A6I9ZE80
LinkDB
All DBs
Position
Un
AA seq
1698 aa
AA seq
DB search
MTSPRGDTGDYTGAGQRDVMAKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGR
CQTCAGNMTECPGHFGHIELAKPVFHVGFLGKTMKILRCVCFFCSKLLVDSNNPKIKDIL
GKSKGQPKKRLTHVYDLCKGKNICEGGEEMDHKFGVEQPEGDEDLTKEKGHGGCGRYQPR
IRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMDPKFARPEWMXX
XXVTVPPLSMSPAVVVQGFAHSXDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLL
QFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPD
PNLAIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLR
FHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTT
PYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTK
RDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIXTHSPHP
DDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDTTRLFYS
NIQTVINNWLLIEGHTIGIGDSIADAKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPG
NTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQ
QNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDT
AVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLK
PSNKAFEKKFKFDYTNERALRRTLQEELVKDILSNAHIQNELEREFDRMREDREVLRVIF
PTGDSKVVLPCNLLRMIWNAQKIFHINSRLPSDLHPVKVVEGVKELSRKLVIVNGEDPLS
RQAQENATLLFNIHLRSTLCSRRMVEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGAL
AAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARD
AERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVSRISPW
LLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQ
EEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKA
LQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDG
SYVNYRHLALLCDTMTSRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDP
MKGVSENIMLGQLAPAGTGCFDLLLDAEKCKHGMEIPSALPGLGVGGPTGMFFGSAPSPM
GGMSPAMTPWNQGATPAYGAWSPSVGSGMTPGGAGFSPSAASDASGFSPGYSPAWSPTPG
SPGSPGPSSPYIPSPAPQHPPDPRVPSPQVGPXSPSYSPTSPAYEPRSPGGYTPQSPSYS
PTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSTTSPSYXXXXP
TYSLTSPAISPDDSDDDN
NT seq
5097 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcaccacgaggggacaccggtgactacacgggggcggggcagcgtgacgtcatg
gctaaacggatgtcagtgaccgaggggggcatcaagtaccccgaaaccaccgagggggga
cgccccaaacttggggggctcatggacccccggcagggcgtcatcgagagaacggggcgc
tgccagacctgtgctgggaacatgacggagtgtccgggtcactttggccacatcgagctg
gccaagcccgtgttccacgtgggatttttgggtaaaaccatgaaaatcctgcgctgcgtc
tgcttcttctgctccaagctgctcgtggactcgaacaaccccaagatcaaggacatcctg
ggcaagtccaaggggcagcccaagaagaggctgacccacgtctacgacctgtgcaagggc
aagaacatctgcgagggcggcgaggagatggaccacaagtttggggtggagcagcccgag
ggcgacgaggacctcaccaaggagaagggccacgggggctgcgggcggtaccagccgcgc
atccgccgctcggggctggagctctacgccgagtggaagcacgtcaacgaggactcgcag
gagaagaagatcctgctgagccccgagcgcgtgcacgagatcttcaagcgcatctcggac
gaggaatgcttcgtgctgggcatggaccccaaatttgcccggcccgagtggatgnnnnnn
nnnngggtcaccgtgcccccgctgtccatgtccccagccgtggtcgtgcagggctttgcc
cacagctaggatgacctgacccacaagctggccgacatcgtcaagatcaacaaccaactg
cggcgcaacgagcagaacggggcggccgcgcacgtcatcgccgaggacgtcaaactgctg
cagttccacgtggccaccatggtggacaatgagctgcccggcctgcccagggccatgcag
aagtcggggcgccccctgaagtccctgaagcagcggctgaaggggaaggagggtcgggtt
cggggcaacctcatggggaaacgcgtggacttctctgcccgcacggtcatcacccccgac
cccaacctggccatcgaccaggtgggcgtcccccgctccatcgcggccaacatgaccttc
gccgagatcgtcacgcccttcaacatcgacaggctgcaggagctggtgcgcagggggaac
agtcagtacccgggggccaagtacatcatcagggacaacggggacaggatcgacctccgc
ttccaccccaaacccagcgacctccacctgcagatcggctacaaggtggagcgtcacatg
tgcgacggggacatcgtcatcttcaaccggcagcccaccctgcacaagatgtccatgatg
ggccacagggtcaggatcctgccctggtccaccttccgtctgaacctgagtgtcaccacg
ccctacaacgccgactttgacggcgacgagatgaacctgcacctgccgcagtcgctggag
acgcgggcggagatccaggagctggccatggtgcccaggatgatcgtcaccccccagagc
aaccggcccgtcatgggcatcgtgcaggacacgctgacggccgtgcgcaagttcaccaag
agggacgtcttcctcgagaggggcgaggtgatgaacctgctgatgttcctgtccacgtgg
gacggcaaggtgccccagccggccatcctgaagccgcggccgctctggacagggaagcag
atcttctccctgatcatccccggccacatcaactgcatcnncacccacagcccccacccc
gacgacgaggacagcggcccctacaagcacatctcccccggggacaccaaggtgattgtg
gagaacggggagctcatcatgggcatcctgtgcaagaagtccctggggacgtcggccggg
tccctggtgcacatctcctacctggagatgggccacgacaccacgcggctcttctacagc
aacatccagaccgtcatcaacaactggctgctcatcgagggtcacaccattggcattggg
gactccatcgccgatgccaagacctaccaggacatccagaacaccatcaagaaggccaag
caggatgtgatcgaggtgatcgagaaagcccacaacaatgagctggagcccaccccgggc
aacaccttgcgccagaccttcgagaaccaggtgaaccggatcctcaacgacgcccgcgac
aagaccggctcctctgcccagaagtccctgtccgagtacaacaacttcaagtccatggtg
gtctcgggggccaagggctccaagatcaacatctcccaggtgatcgcggtggtgggccag
cagaacgtggagggcaagcggatcccatttggcttcaagcaccggacgctgccgcacttc
atcaaggacgactacggccccgagagccgcggcttcgtggagaactcctacctggccggc
ctcacccccaccgagttcttcttccacgccatgggtggccgagagggcctcatcgacacg
gccgtcaagacggccgagaccgggtacatccagcggcgcctgatcaagtccatggagtcg
gtgatggtcaagtacgacgccacggttaggaactccatcaaccaggtggtgcagctgcgc
tacggcgaggacgggctggccggggagagcgtcgagttccagaacctggccaccctcaaa
ccctccaacaaggcctttgagaagaagttcaagttcgactacaccaacgagcgggcgctg
cgccggacgctgcaggaggagctggtcaaggacatcctgtccaacgcccacatccagaac
gagctggagcgcgagttcgaccgcatgcgcgaggacagggaggtcctcagggtcatcttc
cccaccggggacagcaaggtggtgctcccctgtaacctgctccgcatgatctggaacgcg
cagaagattttccacatcaactcccggctgccctcggacctgcacccggtcaaggtggtg
gagggggtgaaggagctgagccgcaagctggtgatcgtcaacggggaggacccgctgagc
cggcaggcgcaggagaacgcgacgctgctcttcaacatccacctgcgctccacgctctgc
agccgccgcatggtggaggagttccggctcagcggggaggccttcgactggctgctgggc
gagatcgagtccaagttcaaccaggccatcgcccaccccggtgagatggtgggcgcgctg
gccgcgcagtccctgggcgagccggccacgcagatgaccctcaacacgttccactacgcg
ggggtgtcggccaagaacgtcaccctgggcgtgccccgcctcaaggagctcatcaacatc
tccaagaagcccaagacgccgtcgcttaccgtgttcctgctgggccagagcgcccgcgac
gccgagcgcgccaaggacatcctgtgccgcctggagcacaccacgctgcgcaaggtgacg
gccaacaccgccatctactacgaccccaaccctcagagcacggtggtggccgaggaccag
gagtgggtcaacgtctactacgagatgcccgacttcgacgtcagccgcatctcgccgtgg
ctgctgcgcgtcgagctcgaccgcaagcacatgaccgaccgcaagctgaccatggagcag
atcgccgagaagatcaacgccggcttcggtgacgacctcaactgcatcttcaacgacgac
aacgccgagaagctggtgctgcgcatccgcatcatgaacagcgacgagaacaagatgcag
gaggaggaggaggtggtggacaagatggatgacgacgtcttcctgcgctgcatcgagtcc
aacatgctgacggacatgaccctgcagggcatcgagcagatcagcaaggtgtacatgcac
ctgccgcagacagacaacaagaagaagatcatcatcaccgaggacggggagttcaaggct
ctccaggagtggatcctggagaccgacggcgtcagcctcatgcgggtgctgagcgagaag
gacgtggaccccgtgcgcaccacgtccaacgacatcgtggagatcttcaccgtcctgggg
atcgaggcggtgcggaaggcgctggagcgggagctctaccacgtcatctccttcgacggc
tcctacgtcaactaccggcacctggcgctgctgtgcgacaccatgacctcgaggggacac
ctgatggctatcacccggcatggcgtcaaccgccaggacactgggccgctcatgaagtgc
tccttcgaggagacggtcgatgtcctgatggaggcagctgcccacggggagagcgacccc
atgaagggtgtgtccgagaacatcatgctgggccagctggccccggccggcaccggctgc
ttcgacctcctgctggacgccgagaagtgcaagcacggcatggagatccccagcgccctg
cccggcctcggcgtcggcggccccaccgggatgttcttcggctcggcccccagccccatg
ggggggatgtccccggccatgaccccctggaaccagggggccaccccggcctacggagcc
tggtcccccagcgtgggcagcgggatgaccccgggcggggctgggttctcccccagcgcc
gcctccgacgcctccgggttcagccccggttactccccggcctggtcacccacgcccggc
tcgccggggtcacccggcccctccagcccctacatcccctcccccgccccgcaacaccct
cctgacccccgtgtcccctctccgcaggtggggccantgtcccccagctacagcccgacg
tcccccgcctacgagccgcggtcgccggggggctacaccccacagagccccagctacagc
cccacctcgcccagttacagccccacctcgcccagctacagcccgacatcgcccaactac
agccccacctcgcccagctacagcccaacgtctcccagttacagcccgacctcgcccagt
tacagcccgacctcgcccagctacagcaccacgtccccgagctacnnnnnnnnnnnnccc
acctacagcctcaccagcccggccatcagccccgacgacagcgacgacgacaactga
DBGET
integrated database retrieval system
