Geospiza fortis (medium ground-finch): 102044112
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Entry
102044112 CDS
T03755
Symbol
VPS50, CCDC132
Name
(RefSeq) VPS50, EARP/GARPII complex subunit
KO
K23288
syndetin
Organism
gfr
Geospiza fortis (medium ground-finch)
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gfr04131
]
102044112 (VPS50)
Membrane trafficking [BR:
gfr04131
]
Protein recycling
Others
EARP complex
102044112 (VPS50)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
Motif
Other DBs
NCBI-GeneID:
102044112
NCBI-ProteinID:
XP_014167577
UniProt:
A0A6I9ZEP1
LinkDB
All DBs
Position
Un
AA seq
1011 aa
AA seq
DB search
MAAVPPFVSVWFQRHLLLPALPCNNPAAAAALGQTRSVPNARKNPRQPGNSPRLRGLRSP
QESVNDLSPIENLRIPTKEELRELHEEPPDPQAQQEIINSIEEVYFSNDSFDIVKYELER
LPPVLSLQELEDYRDKLKQQQAAVSKKVADLILEKQPAYVEELERVTSLQSGLQLAAVIC
TNGRRHLNIAKEGFTQTSLGLLANQRKRQLLIGLLKSLRTIKTLQRTDVRLSEMLEEEDY
PGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVALSKICKNFDINHYTKV
QQAYRLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNTDTKFQKLQYKDLCTHI
TSDSYIPCLADLCKALWEVMLSYYRTMQWHENHDQDEAAVVSSVSDGNNVIGTEENSFDR
NYVKKKLEHGLSRIWQDVQLKVKTYLLGTDLSNFKYDDFIFVLDVISRLMQVGEEFCGSK
SEVLQESIRKQSVNYFKTYHRTRLEELRMFLENETWELCPVKSSFSILQLHEFKFLEQSR
SPSVSPSKQPASAASSAVTLFQQYCAGGNPFEIQADSKDDETEDVLASNGYESDEQEKSA
YQEYDSDSDVPEELKRDYVDEQTGDAPIKSVSRETLRSRKRSDYNLNKVNAPILTNTTLN
VIRLVGKYMQMMNILKPIAFDVIHFMSQLFDYYLYAVYTFFGRNDMFESTGLGLSSSRLR
TTLNRIQESLIDLEVSADPSGTLTAAEERKEKVPSPHLSHLVVLTSGNSLYGLAERVVAT
ESLVFLAEQFEFLQPHLDAVMPAAKKPFLQQFYSQTVSTASELRKPVYWIVAAKAIDYEQ
MLLLMANVKWDVKEIMSQHNVYVDALLKEFEEFNRRLNDVSKRVRIPLPVSNILWEHCIR
LANRTLVEGYANVKKCSNEGRALMQLDFQQFLMKLEKLTDIRPIPDKEFVETYIKAYYLT
ENDMESWIKEHREYSTKQLTNLVNICLGTYINKKARQKLLATIDDTDRPKR
NT seq
3036 nt
NT seq
+upstream
nt +downstream
nt
atggctgctgtccctccctttgtcagtgtgtggtttcaaaggcacctgctcctacctgcc
ctaccctgcaacaacccagcagcagctgcggcgctgggccagacgcgctctgtgcctaac
gctcgaaagaacccgagacaaccaggaaattctcctcgtctacgtggtctaagaagtcct
caggagagtgttaatgacctcagtccaattgaaaacttacggattcctactaaggaggag
ctcagagaactacatgaagaaccacctgatcctcaggcacaacaggaaataattaacagc
attgaagaagtttatttttccaatgactcctttgatattgtgaagtatgagttagagagg
cttcctccagtacttagtcttcaagaactggaagactacagagacaaactaaaacaacag
caagctgctgtatctaagaaagttgcagatttaatccttgaaaaacagcctgcatatgtt
gaggagcttgaacgtgttacatcattgcagagtggccttcagctggcagcggttatttgc
acaaatggaagaagacacctgaatatagcaaaggaagggttcacacaaactagtttgggg
ctccttgcaaatcagaggaaacgacagttgcttattggactgctaaaatctctgagaaca
ataaaaacactgcaaagaactgatgtgcgtttgagtgagatgttggaggaagaggattat
ccaggagctattcaactatgcttggaatgccagaaagctgccagcactttcaaacactac
agctgtataagtgagttaaattcaaaactgcaagacaccttggaacaaatagaggaacaa
ttggatgtagcgctttccaaaatatgcaagaattttgatatcaatcattatacaaaggta
cagcaggcttacaggctgcttggaaaaacacagacagcaatggaccagttacatatgcac
ttcacccaagccattcacaacactgtgtttcaagtagtccttggatatgtggagctgtgt
gcaggaaacacagacaccaagttccagaagttacagtacaaagacctctgtacacacatc
acatcagacagctacattccatgccttgctgatctctgcaaagctctctgggaagtcatg
ctcagttactaccgaacgatgcagtggcatgagaaccatgaccaagatgaggcagcagtt
gtgtcttctgtttcagatggaaacaatgtgattggaactgaagagaacagttttgaccgc
aactatgtcaaaaagaaattggagcatgggctttcacgaatatggcaggatgttcaattg
aaagtgaaaacatatcttctggggacagatttgtctaacttcaaatacgatgacttcata
tttgtacttgatgttatcagcaggctgatgcaggttggagaagaattttgtggcagtaag
tctgaagttttgcaagaatctatcagaaaacaaagtgttaactatttcaaaacataccac
agaacccgtcttgaagaactaagaatgtttttggagaatgagacctgggaactttgtcct
gttaaatcaagctttagtattttgcagcttcatgaatttaagttcttggagcagtcgcgt
tccccgtcggtgtcgccgagtaagcagcctgcctctgcagcttcatcggccgtgacgctg
ttccagcagtactgcgccgggggaaacccctttgaaattcaggccgacagcaaggatgat
gagactgaagatgtgttagcttccaatgggtatgaatcagatgaacaagaaaaaagtgcg
tatcaagagtatgatagtgacagcgatgttcctgaagagttgaaaagagattatgtggat
gagcagacaggagatgccccaataaaaagtgtttctcgagaaactctgaggagcagaaag
agatcagattataacctcaataaagtgaatgcacctattctaaccaacactacactgaat
gtaataaggcttgttgggaaatacatgcagatgatgaatattctgaagcctattgcattt
gatgtgatccacttcatgtcccagctctttgattactatctgtatgcagtctatacattt
tttggccgaaatgacatgtttgaatcaacaggactgggcctcagtagcagcagattacgc
accacactgaacagaatccaggagagtctcattgatctggaggtgtctgctgatccttca
gggactctcacagctgctgaagagagaaaagagaaggtgccaagcccacatctcagtcat
ctcgtagttttgacatctggcaattcgctgtatggcttggcagagagagtggtggccacg
gaatccctggtatttctggccgagcagtttgaatttcttcagcctcatcttgatgcagtg
atgccagctgccaagaagccttttcttcagcagttctattctcagacagtgtcaactgcc
agtgaactacgtaaaccagtttattggattgttgctgctaaagccattgattatgaacaa
atgcttcttctcatggctaatgtgaaatgggatgtgaaggaaatcatgtcacagcacaat
gtatatgtagatgctcttttaaaggaatttgaagaatttaacaggaggttaaatgatgtg
tctaagagagtccgtattccattgccagtctccaacatcctttgggagcactgcatacgc
ttggccaatagaactcttgtggaaggttatgccaatgtaaagaagtgcagcaatgaagga
cgtgccttgatgcaactggattttcaacagttcttaatgaaactagaaaagttaacagac
attaggcctattccagataaagaatttgtggaaacctacattaaagcatactacctgaca
gaaaatgacatggagtcctggataaaagaacatagggaatattccactaagcagctgacc
aatctggtgaatatttgtctgggcacctacatcaacaaaaaggcaagacagaagctgtta
gctaccattgatgacacagacaggcctaagagataa
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