KEGG   Geospiza fortis (medium ground-finch): 102044438
Entry
102044438         CDS       T03755                                 
Symbol
SYMPK
Name
(RefSeq) symplekin
  KO
K06100  symplekin
Organism
gfr  Geospiza fortis (medium ground-finch)
Pathway
gfr03015  mRNA surveillance pathway
gfr04530  Tight junction
Brite
KEGG Orthology (KO) [BR:gfr00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    102044438 (SYMPK)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04530 Tight junction
    102044438 (SYMPK)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:gfr03021]
    102044438 (SYMPK)
   03019 Messenger RNA biogenesis [BR:gfr03019]
    102044438 (SYMPK)
Transcription machinery [BR:gfr03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     102044438 (SYMPK)
Messenger RNA biogenesis [BR:gfr03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     102044438 (SYMPK)
    U7-dependent histone pre-mRNA processing factors
     102044438 (SYMPK)
SSDB
Motif
Pfam: SYMPK_PTA1_N Peptidase_M24 Cnd1 PDS5 Adaptin_N SCD Cohesin_HEAT
Other DBs
NCBI-GeneID: 102044438
NCBI-ProteinID: XP_014167082
UniProt: A0A6I9ZB38
LinkDB
Position
Un
AA seq 612 aa
VQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVVGFIEEACKRDIELLLKLVANLNML
LKDENVNVVKKAILTMTQLYKVALQWMVKSKVISELQEACWEMMSSMASDIILLLDSDND
GVRTHAIKFVEGLIVTLSPRTADSDVPKRHENDVSLERIPRDHPVIKYNVLWEEGKAALE
QLLKFMVHPAISSINLTAALGSLATIARQRPMFMAEVIQAYETLHANLPPTLTKSQLSPG
GDIGFGDTLGGVSPVSPVLLTPENVANLVLISMVYLPEAMPASFQATYTPVESAGTEAQI
KHLARLMATQMTAAGLGPGQGTPPAPEIGVDLGEIGIGVEFAEVGCGRMKVLYPYSDKSH
MHFGAITCSMGIRYKSYCSNLVRTLMVDPSQDMQEHYSFLLGLQDVLLRELRHGLSEDPG
LAGDAVRARVKILASLVTQFEIPIKGEMLSFILDDVRGRLDLAFAWLFHEYNAYLERGGG
GLERYDECLIGLLAGLQEKPDQKDGRHGAGASQRCHPEVPPVSPQSRTYLGMSTLRDLIF
KRPARKFQYLHVLLDLSSHEKDKVRQQALQFIKRMYEKEQLREYVEKFALNYLQLLVHPN
PPSVLFGADKDT
NT seq 1837 nt   +upstreamnt  +downstreamnt
gtgcaggagctgatcatcaacaaggaccccacgctgctggacaacttcctggatgaaatc
atcgccttccaggccgacaaatccatcgaggtgcggaaattcgtggtggggttcatcgag
gaggcctgcaagagggacatcgagctgctgctgaagctggtggccaacctgaacatgctg
ctcaaggacgagaacgtcaacgtggtcaaaaaggccatcctgaccatgacccagctctac
aaggtggccctgcagtggatggtgaagtccaaggtgatcagcgagctgcaggaggcctgc
tgggagatgatgtcctccatggccagcgacatcatcctgctgctggactcggacaacgac
ggcgtccgcacgcacgccatcaagttcgtggaggggctgatcgtgacgctgtcgccgcgc
acggccgactcggacgtgcccaagcggcacgagaacgacgtcagcctggagcgcatcccg
cgcgaccaccccgtcatcaagtacaacgtgctgtgggaggagggcaaggcggcgctggag
cagctgctcaagttcatggtgcacccggccatctccagcatcaacctgacggcagcgctg
ggctcgctggccaccatcgcccgccagcggcccatgttcatggccgaggtcatccaggcc
tacgagaccctccatgccaacctgccgcccacgctgaccaagtcccagctgtccccaggg
ggggacatcggctttggggacactttggggggggtgtcacctgtgtcacctgtcctgctg
acccccgagaacgtggccaacctggtgctgatcagcatggtgtacctgcccgaggccatg
cccgcctccttccaggccacctacacgcccgtggagtcggccggcaccgaggcgcagatc
aagcacctggcccggctcatggccacccagatgaccgcagccggcctggggccaggtcag
gggacacccccggccccagaaatcggggtggatttgggagaaatcgggatcggggtggaa
tttgcagaggttgggtgtggtcggatgaaggtgctgtatccatacagcgacaagtcccac
atgcacttcggggccatcacgtgctccatgggcatccgctacaagtcctactgctccaac
ctggtgcgcacgctcatggtggacccgtcgcaggacatgcaggagcactacagcttcctc
ttggggctccaggacgtcctcttgagagagctgagacacggcctgagtgaagatcctggc
ctcgctggtgacgcagttcgagcccgtgtgaagatcctggcctcgctggtgacccagttt
gagattcccatcaagggcgagatgctctccttcatcctggacgacgtgcggggccgcctg
gacctggccttcgcctggctcttccacgagtacaacgcgtacctggagcgcggcggcggc
ggcctggagcgctacgacgagtgcctgatcgggctgctggccgggctgcaggagaaaccc
gaccagaaggacgggcgccacggggcaggtgcctcccagaggtgccacccagaggtgcca
cctgtgtcccctcagagccgcacctacctgggcatgtccaccctgagggacctgatcttc
aaacggccagcgcgcaagttccagtacctgcacgtgctgctggacctcagctcccacgag
aaggacaaggtgcggcagcaggcgctgcagttcatcaagcgcatgtacgagaaggagcag
ctgcgcgagtacgtggagaagttcgccctcaattacctgcagctcctggtgcaccccaac
cccccctccgtgctcttcggggccgacaaggacacag

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