Geospiza fortis (medium ground-finch): 102044817
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Entry
102044817 CDS
T03755
Symbol
COL22A1
Name
(RefSeq) collagen alpha-1(XXII) chain
KO
K16630
collagen type XXII alpha
Organism
gfr
Geospiza fortis (medium ground-finch)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
102044817
NCBI-ProteinID:
XP_014164777
LinkDB
All DBs
Position
Un
AA seq
668 aa
AA seq
DB search
MRRGPRGSVSVRVRLSVRVRVSVCALLPCPPIPADSSAGRARVGAGLQAVDWISNKPRTL
EKRGPDVRKEIWIRPWWEGAVCSSCWFFSRWCSAGREPRHNEQANPLCVAELSTPSFPEP
WTVVEFFHSKQGCKSVHYDLVFLLDASSSVGKEDFEKVRQWVSNLVETFEIGPDKTRVGV
VRYSDRPTTEFDLGKYKTREEIKEAARQIQYYGGNTNTGDALRYITTYSFSKEAGGRLSD
RTVKKVAILLTDGRSQDFVLDPATAAHQAGIRIFAVGVGEALKEELDEIASEPKSAHVFH
VSDYNAIDKIRGKLRRRLCENVLCPNVHVEGDRFKHTNGGTDEIPGFDLMDSFSVKQIFG
MKEDGIQSAYVRLGSFPVVQKTEDVFPQGLPDEYAFVTTFKFRKASRKEDWYIWQIIDKY
GIPQVSIRLDGENKALEYNAVGLTRDAVRVVFRNARVSDLFDRSWHKIALSIQAKAVSLY
IDCKLVQVLPIEDRENIDIQGKTVIGKRLYDSVPIDFDLQRMVIYCDSRHAELETCCDIP
SGPCQVTVLTEAPPLEVRPTVGSEQVGHLKIFNCSCPPGQKGERGPLGFEGPKGQKGERG
IPGLPGLRGEKGESGKAYGIGEKGEKLHSPLGSAWVGDEAEIQELSGVSDHPSSSAITYL
GSEAVSWW
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgcgcagggggcctcggggcagtgtgtctgttcgtgtccgtctgtctgtgcgtgtccgt
gtgtctgtctgtgcgctgctgccctgcccgcccatcccggctgacagctccgcagggcgc
gcccgggtcggagccgggctccaggctgtggattggatttccaacaagcctcgcaccctg
gagaaaagaggacctgatgtgagaaaggagatatggatacgtccatggtgggaaggcgcc
gtgtgctccagctgctggttcttctcgcgttggtgctcagcggggagagaaccgcggcac
aacgagcaggcaaatcctctctgtgtagctgagctatccactccctcctttccagagcca
tggactgttgtggaattcttccattccaagcagggttgcaagagcgttcactacgacctt
gtcttcctcttggacgcctcctccagcgttggaaaagaagattttgagaaagttcgtcag
tgggtgtccaatttggtggaaacctttgagattggcccagacaagactcgagtgggggtg
gtgcggtacagcgatcggccgaccacagagttcgacctgggcaagtacaaaacccgtgag
gagatcaaggaggctgcacgacagattcagtattatgggggtaacaccaacactggagat
gctctcaggtacatcaccacctacagtttttccaaagaagccggtgggagacttagtgat
cgaacagttaaaaaagtggccatccttttgactgatggaaggagccaggattttgtcttg
gatccagccactgcagcccatcaggctgggattaggatttttgctgtgggtgttggagaa
gccttaaaagaggaacttgatgagattgcttcagagcccaagtctgctcacgtgtttcat
gtctctgattacaacgccatcgacaaaattcgggggaagctgaggaggcgtctctgtgag
aatgtcctgtgcccaaatgtccacgtggaaggagaccggttcaaacacaccaatgggggc
actgatgagatcccaggatttgacctgatggattcattcagcgtgaagcagatttttgga
atgaaagaagatgggattcagagtgcttatgtacggcttggaagctttcctgttgttcag
aaaactgaagatgtatttccacaaggcctgcctgatgaatatgcctttgtaactaccttc
aaattccggaaggcttccaggaaggaggactggtatatctggcagattattgacaagtat
ggcataccacaggtgtcaatcaggctggatggggagaacaaggctctggagtacaacgcc
gtggggctcaccagggatgctgtcagggtggtgttccggaacgcgcgcgtcagcgacctg
tttgaccgcagctggcacaaaatcgccctcagcatccaggccaaggctgtctcgctgtac
atagactgcaagctggtgcaggtgctgcccattgaggacagggagaacattgacattcaa
ggaaagactgtgattggcaaacgcttgtatgacagcgtccccattgattttgatcttcag
aggatggtgatttactgtgactcccggcacgccgagctggagacctgctgtgacattccc
tctggaccatgccaggtcacggtcctgacggaagcacctcccctggaagtgagacccact
gttggcagtgagcaagttggacatctcaagattttcaactgctcttgtcctcctggacaa
aagggggagaggggtccacttggctttgaaggtcccaaaggtcaaaagggagaaagaggc
atcccagggcttcctggactccgaggagaaaaaggagagtcaggcaaagcctatggcata
ggagagaaaggagaaaagttacattctccacttggctcagcctgggttggagatgaagca
gaaattcaggagttgtcaggggtgtctgaccaccccagttcctcagcaataacctactta
gggagtgaagcagtgtcgtggtggtga
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