Geospiza fortis (medium ground-finch): 102044866
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Entry
102044866 CDS
T03755
Symbol
POLE
Name
(RefSeq) DNA polymerase epsilon, catalytic subunit
KO
K02324
DNA polymerase epsilon subunit 1 [EC:
2.7.7.7
]
Organism
gfr
Geospiza fortis (medium ground-finch)
Pathway
gfr03030
DNA replication
gfr03410
Base excision repair
gfr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
102044866 (POLE)
03410 Base excision repair
102044866 (POLE)
03420 Nucleotide excision repair
102044866 (POLE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gfr03032
]
102044866 (POLE)
03400 DNA repair and recombination proteins [BR:
gfr03400
]
102044866 (POLE)
Enzymes [BR:
gfr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
102044866 (POLE)
DNA replication proteins [BR:
gfr03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase epsilon complex
102044866 (POLE)
DNA repair and recombination proteins [BR:
gfr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase epsilon complex
102044866 (POLE)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF1744
POL2_thumb
DNA_pol_B_exo1
zf_DPOE_2
zf-DPOE
DNA_pol_B
DNA_pol_B_exo2
RNase_H_2
APP_N
Motif
Other DBs
NCBI-GeneID:
102044866
NCBI-ProteinID:
XP_014165199
UniProt:
A0A6I9ZCH5
LinkDB
All DBs
Position
Un
AA seq
2256 aa
AA seq
DB search
MRKHAALSHRLPPAPTPALPAAPAVGEPPGRRRAPTEVLDEDRQSVSAVDYYFIQEDGSR
FKVALPYKPYFYIATQKGCEREVSSFLSKKFQGKIAKLETVPKEDLDLPNHLVGLKRNYI
KLSFNTVEDLLKVRKEISPAVRKNREQDQASDVYTTMLSSALSGGSLSTDEEGASKKIAN
QMDNIVDMREYDVPYHVRLSIDLKIHVAHWYNVRYRGNTYPPEITRRDDLVERPDPVVLA
FDIETTKLPLKFPDADTDQIMMISYMIDGQGYLITNREIVSENIEDFEFTPKPEYEGPFC
VFNEPDEAHLIRRWFEHVQETKPTIIVTYNGDFFDWPFVEARAAAHGINMYQEIGFQKDS
QGEYKASQCIHMDCLRWVKRDSYLPVGSHNLKAAAKAKLGYDPVELDPEEMCRMAMEEPQ
TLATYSVSDAVATYYMYMKYVHPFIFALCTIIPMEPDEVLRKGSGTLCEALLMVQAYHAN
IIFPNKQEQEFNKLTEDGHVLDSETYVGGHVEALESGVFRSDIPCRFKMNPAAFDFLVQH
VEKTLQHAIEEEEGLPLDQVTNFQEVCDEIKAKLNSLKDVPNRIECPLIYHLDVGAMYPN
IILTNRLQPSAMVDEATCAACDFNKPGANCQRRMTWQWRGEFMPASRSEYHRIQQQLESE
KFPPLFPDGPPRAFHELSQEEQAKYEKKRLADYCRKAYKKIHVTKVEERVTTICQRENSF
YVDTVRAFRDRRYEFKGLHKVWKKKLSAAVETGDASEMKRCKNMEILYDSLQLAHKCILN
SFYGYVMRKGARWYSMEMAGIVCFTGANIITQARELIEQIGRPLELDTDGIWCVLPNSFP
ENFVIKSTSIKKPKVTISYPGAMLNILVKEGFTNDQYQELQDPASLTYVTRSENSIFFEV
DGPYLAMILPASKEEGKKLKKRYAVFNEDGSLAELKGFEVKRRGELQLVKIFQSSVFEAF
LKGSTLEEVYASVAKVADYWLDVLYSKAANMPDSELFELISENRSMSRKLEDYGEQKSTS
ISTAKRLAEFLGDQMVKDAGLSCRFIISKKPEGSPVTERAIPLAIFQAEPSVRKHYLRKW
LKSPSLQDFNIRAILDWDYYIERLGSTIQKIITIPAALQQVKNPVPRVRHPDWLHKKLLE
KNDVYKQKKINELFVSKGKKQILANPPVEGTPSSQVSDIEDFGAVKIPLPLVPIANKRKR
IPAAEESQELSQDLELSQSWREILGPPPSLGTTKEERLVWLRFHQKKWELQARQRQERRK
RRRLEDGGVVAGGGVVRDALSKGLSSYLRRTARSILDLPWQVVQIAETSQPGLFRLWAVI
GSDLHCIKLSIPRVFYVNQRVPKPEEGTAYRKVNRILPRSNLVYNLYEYSVPEDMYQEHI
NEINADLSAPDIEGVYETQVPLLFRALIHLGCVCMVSRQLVRHLAGREAETFNIEHLEMR
SLAQFTYLEPGSIRHIYLYHSSQGSKAVLGLFIPSQRKAAVFVLDKVRSNQMPNLTTLFS
VERAALLEKVGKELLPPDKHTFEVRAETDPKAIYRGVQRLLLGYKDERRGPTLVAVQSNW
DLKQLASGIPIMEEFPLVPIQLVDDISYSVLDWQRHAARRMIRHYLNLDTCLSQAFEMSR
YYHIPIGNLPDDISTFGSDLFFSRHLRRHNHLLWLSPTARPDLGGKEADDNRLVMEFDER
ASVEINNPGCYSTVCLELDIQSLAVNTVLQSHHVNDMEGGSSMSISFDVIQQASLEDMVT
GNQAANIPASYDETALCSNTFRILKSMVVSWVKEITQYHNVYADNQVIHFYRWLRSPSSL
LYDPALHRTLHNMMKKLFLQLVAEFKRLGSSVVYANFNRIILCTKKRHIEDAISYMEYII
NSIHSKEIFHSLTISFSRCWEFLLWMDPANYGGIKGKVDSRIHYGEKDTRKRLEEEEESE
EEEEEEEEVVGEEEEEKGEPDVEELLENNWNIAQFLPQAGSCQSYFLMIISAYIVAVYHS
MKEELWRNTPGSTPIKRRSTSQVSQEALGELRAMPGMITFSQDYVANELTQSFFTITQKI
QKKMAGSQNATEPSDMFPVLPGSYLPLNNPALEFIKYVCKVLSLDANITNQVNKLRRDLL
RLIEVGEFSEAAQFRDPCRSYMLPEVICRNCNFCRDLDLCKDPALSQDRLVLPGWLCPCC
HVQYDTDAIEMALVEALQKKLMAFVLQDLVCRKCRGVKETHMPVYCSCAGDFALTISSQV
FMDHVSVFQNIARHYGMAYLLETIEWLLHTNLQLQQ
NT seq
6771 nt
NT seq
+upstream
nt +downstream
nt
atgcggaaacatgcggcgctctcgcaccgcctgcccccggctccgaccccggccctgccg
gcagctccggctgtaggggagcccccgggccggcgccgcgccccgacggaggtgctggat
gaggaccggcagtcagtgagcgcagtggactactacttcatccaggaggatgggagccgc
ttcaaggtggccctaccctacaagccctacttctacattgctacccagaagggctgtgag
cgggaagtgtcctccttcctctccaagaagttccaagggaagattgcaaagctggaaact
gtccccaaagaggacttggacttgccaaaccacttggtaggcctgaagaggaactacatc
aagctgtccttcaacacggtggaggacttgttgaaggtgcggaaggaaatctctcctgcc
gtgaggaaaaacagggagcaggaccaggcgagtgatgtctacacaaccatgctgtcaagt
gctctgagtgggggcagtctaagcacagatgaggaaggagcctcaaaaaaaattgccaac
cagatggacaacatcgtggatatgcgggagtatgatgtgccttaccacgttcgcctttcc
attgatctgaagatccatgtggctcactggtacaacgtgcgataccggggcaacacctac
ccacccgaaatcacccgccgagatgaccttgtggagaggccggatcctgttgttcttgcc
tttgatattgaaacaaccaaactccctttgaagtttcctgatgcagacacagaccagatc
atgatgatctcctacatgattgatgggcagggctacctgatcacaaacagggagattgtc
tcagagaacattgaagactttgagtttactcccaaaccggagtatgagggtccattttgt
gtctttaacgaaccagatgaggctcatttaatccggagatggtttgaacatgtccaggag
accaaacccaccatcattgtcacatacaatggagacttctttgactggccctttgtggaa
gcaagagcagcagctcatggaattaatatgtatcaggaaattgggtttcagaaggacagc
cagggagagtacaaagcatcccagtgcatccacatggactgtctgaggtgggtgaagaga
gacagttacctcccagtgggaagtcacaacctgaaagcagcagctaaagcaaaactgggt
tacgatccagtggagctggaccctgaggagatgtgccggatggccatggaggagcctcag
accctggccacctactcagtgtccgatgccgttgctacttactacatgtatatgaagtat
gtgcatcccttcattttcgccttgtgtaccatcattcccatggagcctgatgaggtgtta
agaaaaggatctgggacgctgtgtgaggcactgctgatggttcaggcctatcatgccaac
atcatcttccccaacaagcaggagcaggaatttaacaagcttacagaagatggacatgtg
ctggactcagagacctatgtgggaggccatgtggaagcactggaatctggggtcttccgc
agtgacattccctgccgcttcaaaatgaatcctgctgccttcgacttcctggtgcagcat
gtggagaagaccttgcagcatgccattgaggaagaggagggtcttcccttggatcaggtc
accaacttccaggaggtttgtgatgaaatcaaggccaagctgaattccctgaaggatgtt
cccaacagaattgagtgtcctcttatctatcatctggatgtgggggccatgtaccccaac
atcattctgaccaacaggttgcagccctctgccatggtggatgaggccacatgtgctgcc
tgtgacttcaacaagccaggtgccaactgtcagcgccggatgacgtggcaatggagagga
gagttcatgcctgccagccgcagtgagtaccaccgcatccagcagcagctggagtcggag
aagttccctcccttgttccctgatggaccaccccgtgccttccatgagctttcccaggaa
gaacaagccaaatatgagaaaaagcgcctagcagattactgccgcaaggcgtacaagaag
atccatgtcaccaaggtggaggagcgagtcaccaccatctgccaacgagaaaactctttt
tacgtggacacggtgcgagcattccgggaccgccgatatgagttcaaggggctgcacaag
gtgtggaagaagaagctgtctgcagcagtggagactggagatgcctctgaaatgaaacgc
tgcaagaacatggagatcctctatgactcccttcagctggcccacaagtgcatcctcaac
tccttctatggatatgtcatgcggaaaggagctcgctggtactccatggaaatggctggc
attgtctgcttcacaggggcaaatatcatcacccaggccagagagctgatcgagcagatt
gggagacctctagaactggatactgatgggatttggtgtgtccttcccaacagtttcccg
gagaactttgtcatcaagtcaaccagtatcaagaagccaaaagtaaccatctcttaccca
ggtgccatgctgaacatcctggtgaaagaaggcttcacaaatgaccagtaccaggagctg
caggatccagcctcactcacctacgtcacgcgctcagagaacagcatcttttttgaagtg
gatggtccatacctggccatgatccttccagcgtccaaagaggagggcaagaagctgaag
aaaaggtacgccgtgttcaacgaggatgggtccctggctgagctgaaggggtttgaggtg
aaacgccggggagaactgcagctggtgaagatattccagtcatctgtgttcgaagccttt
ctgaaaggaagcaccctggaagaggtctatgcttccgtggccaaggtggcagattactgg
ctggatgtgctctacagcaaggctgccaacatgcctgattcagagctgtttgagctcatc
tcagagaaccggtccatgtcacggaaactggaggactatggggagcagaagtccacttcc
atcagcactgccaaacgcctggcagagtttttgggggaccagatggtgaaggatgcaggg
ctgagctgccgtttcatcatttccaagaaaccagaagggtctcccgtcaccgagagggcc
atcccccttgccatcttccaagctgagcccagtgtgcgcaagcactacctccggaaatgg
ctgaagagcccctcgctgcaggacttcaacatccgtgcgatcctggactgggactactac
atcgagaggctgggcagcaccatccagaaaatcatcaccattcctgcagccctgcagcag
gtaaagaacccagtgccacgggtccgacacccagactggcttcacaagaagctcctggag
aagaatgatgtgtacaaacagaaaaaaatcaatgagctttttgtttcaaaaggcaagaaa
cagattcttgccaacccgcctgtggaggggacacccagctcacaggtcagtgatatagag
gactttggggctgtcaagatccctctgccactggttcccattgcaaataagcggaagcgc
atccctgcagcagaggaaagtcaagagctgtcccaggacctggagctgtcgcagtcctgg
cgagagattctgggcccacctccatcccttggcaccaccaaggaggagcgtctggtctgg
ctgcgcttccaccagaagaagtgggagctgcaggctcggcagcggcaggagcggaggaag
aggcggcggctggaggatggtggggtggtggcgggtggaggagtggtccgcgatgccctc
tccaaagggctgagcagttacctgcgccggacagcgcgcagcatcctggacttgccctgg
caggttgtgcagatcgctgagaccagccagcctgggttgttccggctgtgggcggtgata
gggagtgacctgcactgcatcaagctgagcatcccccgtgtcttctatgtcaaccagcgc
gtcccaaagcctgaggagggaacagcctacaggaaggtaaacagaatcctgccccgctcc
aacttagtttacaacttgtatgaatactctgttcctgaagacatgtaccaagagcacatc
aatgaaatcaatgcagacctctctgctccggacatcgagggagtgtatgagacacaggtg
ccgctgctattccgtgccctgatccacctgggctgtgtgtgcatggtcagcaggcagctc
gtccggcacctggcagggcgagaggctgaaaccttcaacattgagcacctggagatgcgc
tcactggctcagttcacttacctggagccaggaagcattcgccacatctacctgtaccac
agctcccagggcagcaaggcagtcctgggcctcttcatcccctcccagcgcaaggctgct
gtctttgtgctggacaaggtacgcagcaaccagatgccaaacctcaccaccttgttctca
gtggagcgcgcggctctgctggaaaaggtgggcaaggagctgttgcccccagacaaacac
acctttgaggtgcgcgctgagaccgaccccaaggccatctacagaggtgtccagcggctg
ctcttgggctacaaggacgagcgccggggccccacgttggtggctgtgcagtccaactgg
gacctgaagcagctggcaagtgggatccccatcatggaggagttccccttggtccctatc
cagctggtagatgacatcagctactctgtcctggactggcagcgccatgctgcccgccgc
atgattcgccactacctcaacctggacacttgcctttcccaggcttttgagatgagcagg
tactaccacatccccattggaaacctccctgatgacatctccacctttggctccgacctg
ttcttctcacgccaccttcgtcgtcacaaccacctgttgtggctgtcccccacggcccgc
cccgacctgggggggaaggaggctgatgacaaccgcctggtcatggagtttgatgagaga
gcctcagttgagatcaacaaccctggctgctactccacagtgtgtctggagctggacatc
cagagcctggctgtgaacaccgtgttgcagtctcaccacgtgaatgacatggaaggaggc
tccagcatgagcattagcttcgatgtaattcagcaggcatccctggaggacatggtcaca
gggaaccaagctgccaacatcccagccagctatgatgaaactgccctctgctccaacact
ttcaggattttgaagagcatggtggtgagctgggtgaaggagattacgcagtaccacaat
gtatatgcagacaaccaggtcattcacttttaccgctggctccgctctccttcttccctg
ctttatgacccagcactgcaccgcacgctccacaacatgatgaagaagcttttcctacag
ctggtggctgagttcaagcgcctgggctcctctgtggtctacgccaacttcaaccgcatc
atcctgtgcaccaagaagcggcacattgaggatgccatcagctatatggagtacatcatc
aacagcatccactccaaggagatcttccactctctgaccatctcattctcccggtgctgg
gagttcctgctctggatggacccagcaaattatggaggtatcaagggaaaagtggattct
cgcatccactatggggagaaggacaccaggaagagattggaggaggaggaggagagtgag
gaagaggaggaggaggaggaggaggtggtgggggaagaagaggaggagaaaggggaacca
gatgtggaggagctgctggagaataactggaacatcgcgcagttcctaccccaggccggc
tcctgccagagctacttcttgatgatcatatcagcctacatcgtggctgtgtaccacagc
atgaaggaagaactgtggcgtaacacccctgggagcacccccatcaagaggaggagcacc
agccaggtgtcccaagaggctctgggggagctgagggccatgcctggcatgatcaccttc
tcacaagattacgtggccaatgagctcacccaaagcttcttcaccatcacccagaagatc
cagaagaagatggctggttcccaaaatgccacagagccctcagacatgttcccagtcctg
cctggctcctacctgccactcaacaacccagctctggagttcatcaaatacgtctgcaag
gtcctctccctggatgccaacataaccaaccaggtgaacaaactacgccgggacctgctg
cgcctcattgaggtgggcgagttctcagaagcagcccagtttcgggacccttgccgctcc
tatatgcttcctgaagtcatctgcaggaactgcaacttctgcagagatttggacctgtgc
aaggaccctgccctttcccaggacaggttggtgctgcctggctggctttgcccctgctgc
catgtgcagtatgatactgatgccattgagatggcactggtggaagccctgcagaagaaa
ctgatggcctttgtgctgcaggacctggtgtgcagaaagtgtcgcggtgtgaaggagaca
cacatgcctgtgtactgcagctgtgctggagacttcgccctcaccatctcctcccaggtc
ttcatggaccatgtcagtgtcttccagaacattgcccggcactatggcatggcctacttg
ctggaaaccattgagtggctgctgcacaccaacctccagctccagcagtga
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integrated database retrieval system
