Geospiza fortis (medium ground-finch): 102044868
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Entry
102044868 CDS
T03755
Symbol
PTBP1
Name
(RefSeq) polypyrimidine tract binding protein 1
KO
K13218
polypyrimidine tract-binding protein 1
Organism
gfr
Geospiza fortis (medium ground-finch)
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gfr03019
]
102044868 (PTBP1)
03041 Spliceosome [BR:
gfr03041
]
102044868 (PTBP1)
Messenger RNA biogenesis [BR:
gfr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
102044868 (PTBP1)
Spliceosome [BR:
gfr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
102044868 (PTBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_occluded
RRM_PARP14_3
RRM_Nup35
Motif
Other DBs
NCBI-GeneID:
102044868
NCBI-ProteinID:
XP_005428597
LinkDB
All DBs
Position
Un
AA seq
655 aa
AA seq
DB search
MLVTELTRDAFPLGVVRVEVTLLGSGGFTPTPCPCRRSRCCRREWESCSFLPLLGLGSPP
SPSNNFSLYKLSLAHLQRQLCTLTCFFXYYCKLCWIFVANLSNFFNPFLSFFYSIVQDIT
VGTKRAAEELFSPCVTTNGPFIMSSNSPSAANGNDSKKFKGDNRSAGIPSRVIHVRKLPS
DVTEAEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEETANTMVNYYTTVTPVLRSQPIYI
QFSNHKELKTDNSPNQARAQAALQAVTQVQAGAVALAXGQSPVLRIIVENLFYPVTLDVL
HQIFSKFGTVLKIITFTKNHQFQALLQYADPMSAQHAKLSLDGQNIYNACCTLRIDFSKL
TSLNVKYNNDKSRDYTRPDLPSGDSQPTLDQTMAAAFGAPGIISPPYAGAGFPPTFAIPQ
ATGLTVPSVPGALAPLAIPAAAAAAAAGRIAIPGLSGTGHSVLLVSNLIPERVTPQCLFI
LFGVYGDVQRVKILFNKKDNALVQMADGNQAQLAMSHLNGQKLHGKPIRITLSKHQTVQL
PRENQEDHGLTKDYGTSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTEEDLKLLFSS
NGGMVKGFKFFQKDRKMALIQMGSVEEAIQSLIDLHNHDLGENHHLRVSFSKSTI
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atgttggtgacagagctgactcgtgatgcttttcctctcggtgtggtcagagttgaggtc
acgttgctgggctcgggggggttcacccccaccccctgcccttgcaggaggagcagatgc
tgccgtagggagtgggagagctgcagttttctgccactgctgggtcttgggtctccacca
tcaccatctaataatttttccttgtataaactgtccttggctcacctgcaaagacaactg
tgcactttgacttgcttttttncttactactgtaaactatgctggatttttgtggcaaac
ctatctaacttttttaatccttttctttcttttttctacagcattgtccaagatataaca
gttggtacaaagcgggcagctgaggagcttttctctccttgtgttactactaacggaccc
tttatcatgagcagcaactctccttctgcagctaatggaaacgacagcaaaaagttcaaa
ggtgataacagaagtgccgggatcccatcccgagtaatccacgtccgcaagctccccagt
gacgtcacggaggcagaggtcatttctttgggcttaccctttggcaaggtcaccaatctt
ctgatgttgaaaggaaaaaaccaggctttcatagagatgaacacagaggagacagccaac
accatggtgaactactacaccacagtcactccggtgctccggagccagcccatctacatc
cagttctccaaccacaaggagctgaagacagacaactctccaaaccaagcacgtgcccaa
gcagctctgcaagccgtgacccaggtgcaggctggggctgtggcgctggccnctggccag
agccctgtcctgaggatcattgtggagaatctcttctaccctgtcactctggatgttctg
caccagatcttttccaaatttggtacagtcttgaaaatcatcacattcacgaagaaccac
cagtttcaggccctgttgcaatatgctgaccccatgagtgctcagcatgccaaactgtct
ctggatggacagaacatctacaacgcctgctgcacgctgcgcatcgacttctccaagctc
acgagcctcaatgtaaagtacaacaacgacaagagcagggactacacccgcccagacctg
ccctctggggacagccagcccaccctggaccagaccatggcagctgcttttggtgcccca
ggaataatctctcctccatatgctggagctggctttcctcccacttttgccattcctcag
gctacaggcctgacagttccaagtgttcctggagcacttgctcctttggctattccagca
gcagctgcggcggctgcagcaggacggattgccattcccggcctgtctgggacagggcac
tccgtgctgctggttagcaatctgatcccagagagagttacaccccaatgcctctttatt
cttttcggagtctatggtgatgtgcagagggtgaagattttatttaataagaaagataat
gccctggttcagatggccgatgggaatcaggcccagcttgccatgagccacttgaatggg
cagaagctccacgggaagccgatccgtatcacgctgtccaagcaccagacagtgcagctg
ccccgcgagaaccaggaggaccacggcctgaccaaggactatggcacttctcctctacat
cgtttcaagaaaccaggctccaaaaatttccaaaacatctttcctccttctgccactctt
catctgtccaatattccaccttcagtaactgaagaagatcttaagttgttattttcaagc
aatggtgggatggtcaaaggattcaaattcttccagaaggaccgtaaaatggctctgatc
cagatgggctctgtggaagaagccattcagtccctcattgacctccacaatcatgacctg
ggggagaaccatcacctgcgtgtgtccttctccaagtccaccatttag
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