KEGG   Geospiza fortis (medium ground-finch): 102045090
Entry
102045090         CDS       T03755                                 
Symbol
HDAC1
Name
(RefSeq) histone deacetylase 1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
gfr  Geospiza fortis (medium ground-finch)
Pathway
gfr03082  ATP-dependent chromatin remodeling
gfr03083  Polycomb repressive complex
gfr04110  Cell cycle
gfr04330  Notch signaling pathway
gfr04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:gfr00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    102045090 (HDAC1)
   03083 Polycomb repressive complex
    102045090 (HDAC1)
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    102045090 (HDAC1)
   04350 TGF-beta signaling pathway
    102045090 (HDAC1)
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    102045090 (HDAC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:gfr03036]
    102045090 (HDAC1)
Enzymes [BR:gfr01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     102045090 (HDAC1)
Chromosome and associated proteins [BR:gfr03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     102045090 (HDAC1)
   HDAC complexes
    Sin3A-HDAC complex
     102045090 (HDAC1)
    BRAF-HDAC complex
     102045090 (HDAC1)
    REST complex
     102045090 (HDAC1)
    SHIP complex
     102045090 (HDAC1)
    MiDAC complex
     102045090 (HDAC1)
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     102045090 (HDAC1)
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    102045090 (HDAC1)
  Chromatin remodeling factors
   NuRD complex
    102045090 (HDAC1)
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 102045090
NCBI-ProteinID: XP_014165001
UniProt: A0A6I9Z7Y9
LinkDB
Position
Un
AA seq 448 aa
MKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKYHSDDYIKFLRSIRPDNMSEYSK
QMQRFNVGEDCPVFDGLFEFCQLSAGGSVASAVKLNKQQTDIAVNWAGGLHHAKKSEASG
FCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTG
DLRDIGAGKGKYYAVNYPLRDGIDDESYEAIFKPVISKVMETFQPSAVVLQCGSDSLSGD
RLGCFNLTIKGHAKCVEFVKSFNLPMLMLGGGGYTIRNVARCWTYETAVALDTEIPNELP
YNDYFEYFGPDFKLHISPSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQPIPEDAV
QEDSGDEEEDDPEKRISIRNSNKRISCDEEFSDSEDEGEGGRKNVANFKKAKRVKAEEEK
EEEEKKGEQQSWHLLPGIFPHALLCVFN
NT seq 1347 nt   +upstreamnt  +downstreamnt
atgaaaccccacaggatccgcatgacccacaacctcctgctcaactatgggctctacagg
aagatggagatctatcgtcctcacaaggccaatgcagaggagatgaccaagtaccacagc
gatgattacatcaaattcctgaggtccatccgccctgacaacatgtctgagtacagcaag
cagatgcagagatttaatgtaggggaggactgccctgtgtttgatgggctctttgagttc
tgtcagctctctgctggaggctctgttgccagtgctgtgaagctgaacaagcagcagaca
gacattgcagtgaactgggctggaggtctccaccacgccaagaaatcagaagcttctggg
ttctgctatgtcaacgacatcgtgctggccatcctggagctcctcaagtaccaccagcga
gtgctgtacatcgacatcgacatccaccatggggatggggtggaggaggctttttacacc
acagacagggtcatgaccgtgtccttccacaaatatggagaatatttcccaggaactggg
gacctgagggatatcggggcaggcaaagggaaatactacgctgtcaattaccctctgcgg
gacggcatcgacgacgagtcctacgaagccattttcaagcctgtgatctccaaggtgatg
gagacgttccagcccagcgctgttgtcctgcagtgtggctctgattccctgtctggggac
aggctgggctgcttcaacctcaccatcaaaggccatgccaagtgtgtggagtttgtgaag
agctttaacctgcccatgctgatgctgggaggaggggggtacacgatccggaacgtggct
cgctgctggacctacgagactgctgtggctctggacactgagatccccaatgaacttcca
tacaacgactactttgagtactttgggccggactttaagctccacatcagcccctccaac
atgaccaaccagaacaccaacgaatacctggagaaaatcaagcagcggctctttgagaac
ctgaggatgctccctcacgctcctggggtccagatgcagccaattcctgaggatgctgtc
caggaggacagtggggatgaggaggaggatgatcctgaaaaacgcatttccatccgaaat
tccaacaagagaatctcctgtgacgaggaattctctgactccgaggacgagggcgaggga
gggcgcaagaacgtggccaacttcaagaaagccaaacgtgtgaaggcagaggaggagaag
gaggaagaggagaagaaaggtgagcagcagagctggcacctcctgcctggaatttttcct
cacgcgctgctctgtgtctttaattaa

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