Geospiza fortis (medium ground-finch): 102045093 Help Entry 102045093         CDS       T03755                                  Symbol VPS11 Name (RefSeq) VPS11, CORVET/HOPS core subunit   KO K20179   vacuolar protein sorting-associated protein 11 Organism gfr  Geospiza fortis (medium ground-finch) Pathway gfr04140   Autophagy - animal gfr04148   Efferocytosis gfr05132   Salmonella infection Brite KEGG Orthology (KO) [BR:gfr00001]  09140 Cellular Processes   09141 Transport and catabolism    04140 Autophagy - animal     102045093 (VPS11)    04148 Efferocytosis     102045093 (VPS11)  09160 Human Diseases   09171 Infectious disease: bacterial    05132 Salmonella infection     102045093 (VPS11)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:gfr04131]     102045093 (VPS11) Membrane trafficking [BR:gfr04131]  Endosome - Lysosome transport   Tethering complex    CORVET complex     102045093 (VPS11)    Hops complex     102045093 (VPS11) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  PEP5_VPS11_N TPR_PEP5_VPS11 VPS11_N VPS11_C Clathrin zf-C3HC4_2 zf-RING_2 zf-C3HC4 zf-rbx1 zf-C3H2C3 zf-RING_5 TPR_GEMI5 zf-RING_UBOX zf-ANAPC11 zf-RING_11 GHL13 zf-C3HC4_3 zf-RING-like zf_RING_Vps8_fungal Motif Other DBs NCBI-GeneID:  102045093 NCBI-ProteinID:  XP_005427597 UniProt:  A0A6I9HPL8 LinkDB All DBs Position Un AA seq 929 aa AA seqDB search MAAYLQWRRFVFFDRETVREPSGPDGAGAKPFALPPGIAVCDSGRGSLVFGDMEGQIWFL PRSLQLSSFQAYKLRVTHLYQLKQHSILVSIGEDEEGINPLVKVWNLEKRDGGNPLCTRI FPAIPGNKPTVVSCLTVHENLNFMAIGFADGSVVLTKGDITRDRHSKTQILHEGSYPVTG LAFRQSGKTTHLFVVTTENIQSYMLSVKDYPHLELDTHGCGLRCSSLSDPSQDLQFIVAG NECVYLYQPDERGPCFAFEGQKLIVHWYRGYLIIVSKDRKTSPKSEFAGNEAQNSDKQVL NIYDLCNKFIAYSSIFDDIVDVLAEWGSLYVLTRDGKIHVLQEKDTQTKLEMLFRKNLFE MAINLAKSHHLDSDGLSEIFRQYGDHLYNKGNHDGAIQQYIRTIGKLEPSYVIRKFLDAQ RIHNLTAYLQMLHLQSLANADHTTLLLNCYTKLKDSSKLEEFIKTSESEVHFDVETAIKV LRQAGYYSHAVYLAEKHEHHEWYLKIQLEDIKNYQEALHYIGKLPFEQAESNMKRYGKIL MHHVPNETTELLKILCTDYRPSGGNEGPGMLEGKKANSEEFIPVFANNSRELKAFLEHMT EVQADSPQGVYDTLLELQLQNWAHEQDEQIKEKLHNEALTLLKSGRFKTVFDKALVLCQM HNFKDGVLYLYEQGKLFQQIMHYHMQNEQYKKVIEVCELYGDQEACLWEQALSYFARKEE NCKEYIAAVLKHIENKNLMPPLLVVQTLAHNSTATLSVIKDYLVNKLQKQSCQIEQDEQR IQKYREETTRIRLEIEELKASPKIFQKTKCSICTSALELPSVHFLCGHSFHQHCFESYSE SDSECPTCMPENRKVMDMIRAQEQKRDLHDQFQHQLKCSNDGFSVVADYFGRGVFNKLTL ITDLPSGKTATTIEAGLQRELLIHTKRST NT seq 2790 nt NT seq  +upstreamnt  +downstreamnt atggctgcctacctgcagtggcgccggttcgtcttttttgacagagagacggtgagggag ccctcggggccggatggagccggtgcgaagcctttcgcgctgcccccaggcatcgcggtc tgcgactcgggccggggaagcctcgtgttcggagatatggaaggtcagatttggtttttg cctcgctcccttcaactcagcagtttccaagcttacaagctaagggtgacacatctgtac cagctgaagcagcacagtatcctggtttctattggtgaggatgaagagggtataaatcct ttggtgaaagtctggaacctggagaaacgagatggtggtaatcctctttgcacacgaatt tttccagcaataccaggtaacaagcccacggttgtatcctgcttaactgtccacgagaat cttaatttcatggctatcggttttgcggatgggagtgttgtacttactaaaggagacatc actcgagatcggcatagtaagacccagatcctacatgaaggcagttaccccgttactggc cttgcttttcgacagtctggcaaaacaacacatctatttgtggtgaccacagagaacatc cagtcttatatgctttcagtgaaagactatcctcacctggagctggacactcatggttgt ggattgcgctgttcatctctcagtgacccctcccaggatctccagttcattgtggcagga aatgaatgtgtgtacctttaccaaccagacgaacgtggcccctgctttgccttcgaggga cagaagctgattgttcactggtatcgggggtacctcatcattgtctccaaggaccgaaag acttccccaaagtcagaatttgctgggaatgaggcacagaattcagacaaacaagtcctg aatatctatgacttgtgcaacaaattcattgcatacagctcaatctttgatgacatagtg gatgtcttggcagagtggggatctctctatgtactgaccagagatgggaagatccatgta ctgcaggagaaggatacacaaaccaaacttgagatgctgttcagaaagaacttatttgaa atggccattaacctggccaagagccaccacttggacagtgatggtttgtcagagattttc cgtcagtatggtgatcatctctataacaagggaaaccatgatggagccatccagcagtat atccgaactatagggaagctagaaccatcttatgttattcggaaattcctggatgctcag cgtatccacaaccttactgcttatctacagatgctccatctgcagtccctggccaatgca gaccacactacacttctgctgaattgctataccaaactcaaagacagctccaaactggaa gagttcattaagacgagtgagagtgaggtccactttgatgtggaaacggctatcaaggta cttcgccaagctggctactactcccatgccgtgtacctggcagagaagcatgagcatcat gaatggtacctcaaaatccagttagaggacatcaagaactaccaagaggctttgcactac attggaaaactgccctttgaacaggcagagagtaacatgaagcgatatggtaaaatcctg atgcaccatgtccctaatgagaccactgaattgctgaagatcctttgcactgattaccgt ccctcgggaggtaatgaaggccctgggatgctagaaggaaaaaaggctaattcagaggag ttcatcccagtctttgcaaacaattcccgagaactgaaagcttttctggagcacatgact gaggtgcaggctgactctccacagggtgtctatgacactttgctggaacttcaactgcag aactgggcacatgaacaagatgagcagatcaaggagaagttgcacaatgaagccctcacc ctcctgaagagcggaaggttcaaaacagtctttgataaggccttggtcctatgtcagatg cacaatttcaaggatggtgttctctacctctatgagcagggcaaacttttccaacagatc atgcactaccacatgcagaatgagcagtacaagaaggtgattgaggtgtgcgagttgtat ggcgaccaagaggcttgtctctgggaacaggctcttagctactttgcacggaaggaggag aactgcaaagagtatattgctgcagtgctgaaacacatagagaacaagaatcttatgcct ccgctgcttgttgtgcagacgctggctcataactccacagccaccctgtctgtgattaag gattatcttgtcaacaagctgcagaagcaaagctgccagatagagcaggatgagcagaga attcagaaataccgagaagaaactacgaggatccgcctggaaattgaagagctaaaagca agtcccaagatttttcagaagaccaagtgtagcatttgcaccagtgcattggagctccct tcagtccacttcctgtgcggtcattcctttcaccagcactgctttgaaagctactctgag agtgattcagaatgtcctacttgtatgccagaaaatcgcaaagtgatggacatgatccga gcccaggagcagaagagagatctgcatgatcagtttcagcatcagctcaagtgttcaaat gatggcttctcagtcgttgctgactactttggtcgcggcgtcttcaataagctcaccctg atcacggacttgccctcgggaaagaccgctacaaccatcgaggctggcctgcagcgggag ctgcttatccacaccaagcgcagtacctga

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