Geospiza fortis (medium ground-finch): 102045396
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Entry
102045396 CDS
T03755
Symbol
GEN1
Name
(RefSeq) GEN1, Holliday junction 5' flap endonuclease
KO
K15338
holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
Organism
gfr
Geospiza fortis (medium ground-finch)
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gfr03400
]
102045396 (GEN1)
DNA repair and recombination proteins [BR:
gfr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
102045396 (GEN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XPG_I
Chromo_2
XPG_N
A2L_zn_ribbon
Motif
Other DBs
NCBI-GeneID:
102045396
NCBI-ProteinID:
XP_005420336
UniProt:
A0A6I9HG92
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All DBs
Position
Un
AA seq
936 aa
AA seq
DB search
MGVTYLWQILEPVRQPVNISSLRGKTLAVDLSLWVCEAQTVKKMVGVVTKPHLRNLFFRF
SFFTSMGIKLVFVMEGEAPRLKADTMSKRNEMRYGPSKKAGAVRTGRSLFTAMLKECLEL
LECLGVPWVQAAGEAEAMCAYLNSKGLVDGCITNDGDVFLYGAQTVYRNFAMNAKDPHLD
SYTMSSIKEKLGCDRESLIGLAVLLGCDYLPKGVPGVGKEQALKLIETLQGQNLLQRFEQ
WKEQFQHDDNPRLVVKRVIHCSECHHPGSYKEHEHNGCKFCGSVRCCKPSDSKHCCPCAW
HQWERVKQANAAEDSIRKKAMSCEGFPFSEVIQEFLVNKNKLINIKECQRPNLLSFQLFA
SEKMEWTKHYACKKLLALLTRYDMIQRKSGNIDSKQLQAIRIVKTRVKNGIPCFEIEWQK
PEHYVDPEDEPVELFVVTVEEESLFQAAYPDVVALYQVEKSDILQKKQKKKKDRSEEKEL
PNSYAEITSLLSQINLKPTHRILPVQHSMSDTKSPPEDQTQQRSTGSKDAALPSASCITS
VHVSTSAAALADSSVPSQCTYSAMSSSSFIPGLQLSPTDGKGTSFSTTTAHEGDDHDPAA
DLTTCIKYSHPLSHETVRNSSEYTDITQSDMHSDSEDDLFTNNPVGQIQEWSLRERILKK
APIPSQPLSEDTVQLESWNCFKQTREALNPDRNHVSSSCQLNNPEQENKNVLSENSTSES
SLHIYQDAYKKADILAETAQKDPSRSESASLACSGKTTETLHPGCEMLPASQKPADATGC
QIKEACIETTWKVSSKKSVCQNRCSASEDSDDGHVDKILVYEQQKRQLNPGQFKKCFTKK
KGSIVTSKRTNSDSALTIKGKNKMTNLKKAANRFSVQVAPKPSSVEEVNCSQSPERPIER
LGSDPTEQEKSAVLTSAWADSPLPLYERLKGRIKIS
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atgggagtgacttacctgtggcaaatccttgagcctgtgaggcaacctgtcaacataagt
agtctcagagggaaaacacttgctgttgatttaagcttgtgggtttgtgaagcacagact
gttaaaaagatggttggagtagttaccaagccacatctcagaaaccttttttttcggttc
tctttctttacatcaatgggaattaaactcgtgtttgtcatggaaggagaggcccccagg
ctgaaagcagacaccatgagcaagaggaatgagatgcgctatgggccttcgaagaaagct
ggagctgtaagaacagggagatctttatttacagccatgttaaaagagtgtcttgaacta
ctggagtgtttaggtgtcccttgggttcaagcagctggagaggcagaggcaatgtgtgcc
tacctaaattcaaaaggacttgttgatggctgcattaccaatgatggagatgttttcttg
tatggagctcaaacagtttatagaaactttgccatgaatgctaaggatccacatcttgac
agttacacaatgtcctctattaaggaaaaactcggttgtgacagagagtctttgattggg
ctagcagttcttctgggctgtgattatcttccaaagggggttccaggagttgggaaggaa
caagctttaaagttaattgagactctgcaaggtcaaaacttactgcaaaggtttgagcag
tggaaggaacaatttcagcatgatgataatccacgtttggttgttaaaagggtaattcac
tgttcagagtgccatcatccaggatcttacaaggaacacgagcacaatggatgtaaattc
tgtggaagtgtgagatgctgcaaacccagcgactccaagcactgctgcccctgtgcatgg
catcagtgggagcgagtgaaacaagcaaatgcagcggaggacagtatcagaaaaaaagcc
atgagctgtgagggctttccattttctgaggttatccaagagtttcttgtaaacaagaat
aaattgatcaacataaaggaatgtcaaaggccaaatttattgtcctttcagttatttgct
tcagagaagatggaatggaccaaacattatgcttgtaaaaagctgttagcacttttgaca
cgttatgatatgatccagagaaaatctggaaacattgactcaaaacaactgcaggcaata
cggattgttaagacacgtgttaaaaatggaattccttgttttgaaattgaatggcaaaaa
ccagaacattatgttgatccagaagatgagcctgtggagttatttgtagtcacggtagaa
gaagagtctttgtttcaggctgcttatcctgatgtcgttgccctctatcaagtggaaaag
tcagacattcttcagaagaaacagaaaaaaaagaaagacagatcagaagaaaaggaatta
ccaaattcttatgctgaaattaccagtcttctgtctcaaattaatttaaagcctacacac
agaattcttcctgtgcaacactccatgtcagatacaaaatctcccccagaagatcagaca
cagcagagaagtactggatcaaaagatgcagcattaccttcagcttcctgcataacatca
gttcatgtgtcaacatcagcagctgctcttgctgactcatctgtgccctcacagtgcact
tattcagcgatgtcatcctcttcctttatacctggtctgcagctgagccctactgatggg
aaaggaacctccttcagcactacaacagcccatgaaggtgatgaccatgatccagcagct
gacttaaccacatgcataaaatactcacatccactaagtcatgaaacagtaagaaatagc
tcagagtatactgatattacacagtctgatatgcattctgatagtgaagatgatttgttc
acaaataatcctgtgggacaaattcaggagtggtctttaagagagagaatacttaagaag
gctcccattccatcacagcctttgtctgaagatacagtgcaactggagtcttggaattgt
tttaaacaaacaagagaagcattgaatcctgatagaaatcatgtctcttcctcatgtcag
ttaaataatccagagcaggaaaataaaaatgttctatcagaaaactctactagtgaatcc
agcctacatatctatcaagatgcgtataaaaaagctgacatcctggctgaaacggcgcaa
aaagacccttctagaagtgaatcagcatctctagcctgcagtgggaaaacaacagagaca
cttcatcctgggtgtgaaatgcttccagcatctcaaaagccagcagatgcaactggctgt
caaattaaagaagcttgtattgaaactacttggaaagtttcttctaagaagagtgtctgt
cagaacagatgctctgccagcgaagacagtgatgatgggcatgtggataaaatcctggtt
tatgagcagcagaaaaggcaactgaaccctggccagtttaagaaatgttttacaaagaaa
aagggtagcattgttactagcaaaaggacaaacagtgactcagcccttacaattaagggg
aagaataaaatgaccaatttaaagaaagctgccaacagattctcagtgcaagtagctcca
aaaccatcctctgtagaggaagttaattgttcccaaagtccagagagaccaattgaaaga
ttgggttctgaccccacagagcaagagaaaagtgctgttctgacttctgcatgggcagac
agtccccttcccctgtatgaaagactgaaaggaagaatcaaaatcagttag
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