Glossina fuscipes (tsetse fly): 119642317
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Entry
119642317 CDS
T09630
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
gfs
Glossina fuscipes (tsetse fly)
Pathway
gfs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gfs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119642317
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gfs03019
]
119642317
03041 Spliceosome [BR:
gfs03041
]
119642317
03009 Ribosome biogenesis [BR:
gfs03009
]
119642317
03016 Transfer RNA biogenesis [BR:
gfs03016
]
119642317
Enzymes [BR:
gfs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119642317
Messenger RNA biogenesis [BR:
gfs03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
119642317
Spliceosome [BR:
gfs03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
119642317
Complex C
U4/U6.U5 tri-SnRNP related factors
119642317
Ribosome biogenesis [BR:
gfs03009
]
Eukaryotic type
Pre-60S particles
Helicases
119642317
Transfer RNA biogenesis [BR:
gfs03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
119642317
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
AAA_22
nSTAND3
ATPase_2
Motif
Other DBs
NCBI-GeneID:
119642317
NCBI-ProteinID:
XP_037897363
UniProt:
A0A9C6DZD9
LinkDB
All DBs
Position
Unknown
AA seq
1031 aa
AA seq
DB search
MEDVDELFNCFNETADIDITEELIPPEESVIAVVDKGGLKENESPRSIEKRARVVNSAED
AAEDTKRIKITESILDDICVDALKSCVIVHVIKSPESCTHEVAIYPGQEYVPLQYFIGKP
AKCYAFVLDPFQKEAILCIDNQQSVLVSAHTSAGKTVVAEYAIAKSLNAKQRVIYTTPIK
ALSNQKYREFNEEFKDVGLVTGDVTINPSASCLIMTTEILRNMLYRGSEIMREVGWVVFD
EIHYMRDKERGVVWEETLILLPDNVRYVFLSATIPNARQFAEWVCHLHKQPCHVVYTDYR
PTPLQHYIFPAGGDGLHLIVDESGHFKEDNFNTAMAVLQSSGEAAKGDQKGRKGGIKGVN
SGQSNIFKIVKMIMERNFAPVIIFSFSKKDCEVYAMQMAKLNFNTADEKKLVDEVFNNAL
DVLSEEDRQLPQVENVLPLLRRGIGIHHGGLLPILKEIIEILFGEGLLKALFATETFAMG
LNMPARTVLFTAPRKFDGKDFRWISSGEYIQMAGRAGRRGLDDKGIVILMIDEKVSPGVG
RDIVQGKADPINSAFHLTYNMVLNLLRVEEINPEYMLERSFFQFQNQSSIPELYKQVQEK
QQELDKYRVNEEHSVVSYHHIRTQLDSLGKEFRKWITKPEYLVPYLQPGRLVKVQSESDE
FDWGIVVNFKKQSNNTRNPLKSETVVIVDVLLHVTEESAKNDEPKPCKKGQNGNMEVVPV
VHKLISHISSLRVYYPNDLRPADNRRSVLKTINEVKKRFPKGPPLLNPITEMHIKDAEFK
NIVDSIHKFEERLFAHPLHRSSNLDCVYTLYKGKLNVLEQLKIVKTKLKEARSLLQMDEL
KHRKRVLRRMEYCTAADVIEFKGRVACELSSADELLVTEMIFNGIFNDLTTPQTVALLSC
FVCDEKSAETIKCAEELSGPLRSMQELARRIAKISTECKLELDEEAYVEKFKPFLMDVVL
AWCKGASFLSVCKMTDIFEGSIIRCMRRLEELLRQMCQAAKTIGSTDLENKFSEGVRLLK
RDIVFAASLYL
NT seq
3096 nt
NT seq
+upstream
nt +downstream
nt
atggaggatgtggacgagttatttaattgctttaatgagacagcagatatcgatattact
gaggaactaattccaccggaagaatcagttatcgcagttgtagacaaaggtggattaaaa
gaaaatgagagtcccagaagtattgaaaaacgtgcccgtgttgtcaatagcgctgaagat
gcggctgaggatactaagcgtattaagattactgagtccatattggatgatatttgtgtg
gacgctttgaaatcatgtgtaatcgtccatgttatcaaatcacctgagtcgtgcactcac
gaagtggctatatatccggggcaagaatatgtgcctctgcaatattttattggcaaaccc
gccaaatgttacgcttttgttttggatccttttcaaaaagaggccattttatgcattgat
aaccagcaaagtgttctagtttcggctcatacatcagcgggcaaaacagtagtggctgaa
tacgccatcgccaaatcattaaatgctaaacagcgggtgatctatacaacaccaattaaa
gctttatccaatcaaaaatatcgggaatttaatgaagagttcaaagacgtaggcttggta
acgggtgatgtgacaattaacccttcggcgtcctgcttaattatgacgactgagattttg
cgaaatatgttgtaccgtggcagtgaaattatgcgtgaggtaggatgggtagtgttcgat
gaaattcactatatgcgtgacaaagaacgcggcgtagtttgggaagagacattaatattg
ttgcccgataatgtgcgatatgtttttttatcggccactataccgaacgctcgtcagttt
gcggaatgggtgtgtcatttgcataagcagccatgtcatgtagtctacacggattacaga
ccaacaccgttgcaacattacatttttccagcaggtggcgatgggttacatttaattgtg
gatgaaagcggacattttaaggaggacaatttcaacaccgccatggccgttctacaaagt
agcggtgaagctgccaaaggtgatcaaaaaggacgtaagggagggattaaaggtgtaaat
agtggccaatccaatatattcaaaatcgtgaaaatgattatggaaagaaattttgctccg
gtcataattttctcctttagcaaaaaagattgcgaagtttatgctatgcaaatggcaaaa
cttaattttaatacggcagatgagaagaaactggtcgatgaggtattcaacaatgcctta
gacgtcctatcggaggaagacagacagttgccacaagttgaaaatgtgttgccgttgcta
cggcgtggtattggtatacaccacggtggattgttaccaatcctgaaagaaataattgaa
attttatttggcgaaggtttgcttaaggctttgttcgccacggaaacttttgcaatgggc
ctgaatatgccagccagaacagttttgtttactgcgcctcgtaagtttgacggcaaagat
tttcgctggatatcttcaggagagtacatacaaatggccggccgtgcaggacgtcggggt
cttgatgataaaggtattgtaatccttatgattgacgagaaggtgtcgccaggtgttggt
cgagatatcgtccaaggcaaagcagatcctatcaactcggcttttcatttaacgtataac
atggtgctcaacctcctacgagttgaagaaatcaatccagaatatatgctggagcggtca
ttttttcaatttcaaaaccaatcttctattccagaattgtacaaacaagtccaagaaaaa
cagcaagaactggataagtacagggtcaacgaggagcatagcgtcgtttcttatcaccac
atacgtacacaattggactccttgggtaaagaattccgaaaatggataaccaaacctgaa
tatttagttccatatcttcagcccggccgtttagtaaaagtgcaaagtgaatccgacgaa
ttcgattgggggattgtagttaatttcaagaagcaatcgaacaatactcggaatcctctg
aaatctgaaactgtggtcattgtagatgtgctcctgcacgttacagaagaatcggcaaaa
aacgatgaacccaaaccctgcaaaaagggacaaaatgggaatatggaggttgtgcctgtt
gttcacaaactcatatcccatatttcctcactacgcgtatactacccgaatgatctaagg
ccagccgataatcgacgcagcgttctcaaaactattaatgaagttaaaaaacgttttcct
aagggccccccacttctcaatccaattacagaaatgcatattaaagatgcagagtttaaa
aatattgttgactcgattcataagttcgaagaaagactttttgctcatcctctacacaga
tcttccaatttggactgcgtgtacactctttacaaaggaaagttgaatgtactagagcaa
ttgaaaattgttaaaaccaagttaaaagaggctcgcagtctattacaaatggacgagtta
aaacaccgtaaacgggttttgcgacgcatggaatattgtactgccgctgatgttattgaa
tttaaagggcgcgtggcttgcgagcttagctcagccgatgagctgttagtaactgaaatg
atattcaacggaattttcaatgacttgaccactccgcaaacagtggcattgctgtcgtgt
tttgtatgcgatgagaaatctgctgaaacgataaaatgtgcagaagaactttctggtcct
ttgcgttctatgcaagagttggcgagaagaattgctaaaatctcaactgaatgcaaattg
gaattagatgaagaagcttatgtagagaaatttaaaccatttctcatggatgtggttttg
gcttggtgtaaaggcgcatcgtttcttagtgtatgtaaaatgaccgacatattcgaagga
tctataatacgatgtatgcgtcgtcttgaagaattattgcgacaaatgtgtcaagctgct
aaaacaattggtagcacagacttagaaaataaattttcggagggtgtacgtctactgaaa
cgtgatattgtttttgccgcatctttatatttataa
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