Gemmobacter fulvus: KM031_03580
Help
Entry
KM031_03580 CDS
T07830
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
gfu
Gemmobacter fulvus
Pathway
gfu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gfu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KM031_03580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gfu03019
]
KM031_03580
03009 Ribosome biogenesis [BR:
gfu03009
]
KM031_03580
Enzymes [BR:
gfu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
KM031_03580
Messenger RNA biogenesis [BR:
gfu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KM031_03580
Ribosome biogenesis [BR:
gfu03009
]
Prokaryotic type
rRNA processing factors
KM031_03580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
DUF2770
Motif
Other DBs
NCBI-ProteinID:
QWK91000
UniProt:
A0A975P702
LinkDB
All DBs
Position
complement(734098..736911)
Genome browser
AA seq
937 aa
AA seq
DB search
MAKKMLIDATHAEETRVVVVDGNKVEEFDFETVNKRQLQGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFAEIHPDYYQIPVADRKALLDEERALARAEEDEDNRSRSRSGGNRNGQKP
RPNGNGNGRSDAQAEAVASDDAVISAEVADAEAPEIKGMDVVDLGEETGADALFVSRNAD
RAEIASERSQSEAHYEAVDHAADVDDEIESVAEEDVAEEIRAPRKPRARRYKIQEVIKMR
QIMLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITQAADRKKLKEIAG
EMEVPEGAGLIIRTAGAKRTKPEIKRDYEYLMRLWEQIRELTLRSIAPAPIYEEGDLIKR
SIRDLYNREIDEVLVEGEGGYRTAKDFMRMIMPSHAKVVQRYAEPMPLFARYQVESYLAG
MFNPVVQLKSGGYIVIGVTEALVAIDVNSGRATKEGSIEETALKTNLEAADEVARQLRLR
DLAGLIVIDFIDMEERRNNASVEKRLKDKLKTDRARIQVGRISGFGLMEMSRQRLRPGML
ESTTQPCPHCHGTGLIRSDDSLALQILRALEEEGTRKRSKEVLLKAPVAVINYLINNKRE
HIALIEARYGMAVRLEADPHMISPDFSIEKFKTAVRVVPDMSAVISGNAALMGAPVAEEE
EDPDLPLDEEEDEADEAEAEARGDADGEGNGEGGNGSKKKRRRRRRGRGGSSKYRDENGN
ETGSDDEDEDDLDGEEDEAEAVEAPAADAVTAPVATMAEAEATVVAEAMAEVAVAEAEAE
VVAKPAAKSSKSAAGKAAGTKTTAAKTSKPATSKAKAPKAAAAEKGEAVADAAEPAPKLK
STRTRTTSSAKAKAKAAAEAEAAAAAPEADVAAAPVVEAPVAAPVAEVPPQPAAPVLQAD
PGMEPVLEAVSADPAEAEAAEDDEPKAKRKGWWSLGR
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atggccaagaaaatgcttattgatgccacccacgccgaggaaactcgggtggtcgtggtc
gacggaaacaaggtcgaggaattcgatttcgagaccgtaaacaaacggcaactgcaagga
aatatctacctcgccaaagtgacccgcgtggagccttcgcttcaggcggcctttgtcgat
tacggcggcaaccgccacggttttctcgcctttgccgaaattcaccccgattattaccag
atccccgtcgcggatcgcaaagccctgctggatgaagagcgggccttggcacgcgccgaa
gaggacgaggacaaccgttcgcgttcgcggtcgggcggcaatcgcaacgggcagaaaccg
cgcccgaacggcaatggcaatggccggtccgatgctcaggccgaggcggtggcctctgat
gatgcggtgatcagcgccgaggtggcggacgcagaagcgcccgaaatcaagggcatggat
gtcgttgatctgggtgaagaaaccggcgccgatgcgctgtttgtcagccgcaacgccgac
cgtgccgaaatcgcctcggagcgcagccagtccgaagcgcattacgaagcggtcgatcac
gccgccgatgtcgatgacgagatcgaatccgtcgccgaagaggatgtggccgaagaaatc
cgggccccgcgcaagccgcgcgcccggcgctacaagatccaggaagtcatcaagatgcgc
cagatcatgctggtgcaggtggtgaaggaagagcgtggcaacaagggtgcggccctgacc
acctatctgtcgctggccgggcgctattgcgtgctgatgccgaacaccgcgcgcgggggc
ggcatttcgcgcaagatcacccaggcggcggatcgcaagaagctgaaggaaatcgcgggc
gagatggaggtgccggaaggtgccggcctgatcatccgcacggccggggccaaacgcacc
aagccggaaatcaagcgcgactatgaatacctcatgcgcctgtgggaacagatccgcgaa
ttgacgctgcgctccatcgcgcccgcgccgatctatgaggaaggcgatctgatcaaacgc
tcgatccgcgacctttataaccgcgagattgacgaagtgctggtcgaaggcgagggcggc
taccgcaccgccaaggacttcatgcgcatgatcatgcccagccacgccaaggtggtgcag
cgctatgccgagcctatgccgctgttcgcgcgctatcaggtggagagctatctggcaggc
atgttcaacccggtagtgcagctcaaatccggtggttacatcgtgatcggtgtgaccgag
gcgctggtggcgatcgacgtgaactcgggtcgggccaccaaggaaggctcgatcgaagaa
accgcgctcaagaccaaccttgaagcggcggatgaggtggcgcgccagttgcgcctgcgc
gatctggccggcctgatcgtgatcgacttcatcgacatggaagagcgccgcaacaatgcc
tcggtcgagaagcggttgaaagacaagctgaaaaccgaccgtgcgcggattcaggtgggg
cgcatctcgggctttggcctgatggagatgagccgccagcgcctgcgccccggcatgttg
gaaagcaccacgcagccttgcccgcattgccatggcactggcctgatccgctcggatgac
agtctcgcgctgcaaatcctgcgcgcgctggaagaagagggcacgcgcaaacgctccaaa
gaggtgctgctgaaagcgccggttgcggtgatcaactatctgatcaacaacaagcgcgaa
catatcgcgctgatcgaggcgcgttatggcatggcggtgcggctggaggccgatccgcat
atgatcagccccgatttcagcatcgagaagttcaagacggcggtgcgggttgtgccggat
atgtcggcggtgatttccggcaatgcggcgctgatgggcgcacctgtggcggaagaagag
gaagatcccgatctgccgctggacgaggaagaagacgaggctgacgaggccgaggccgaa
gcccggggtgatgccgacggtgagggcaacggcgaaggcggcaacggatcgaagaaaaaa
cgtcgccgtcgccgtcggggccgcggtggttcgtccaagtatcgggacgagaatggcaat
gaaaccggatcggacgacgaggacgaagacgatctggacggggaagaggacgaggcagag
gccgtggaggcccccgcagccgatgccgtgactgcgccggttgcgacaatggccgaggcc
gaagccacggtggtggccgaagctatggccgaggtcgcggtggccgaagccgaggcagag
gtggttgcgaaaccggccgccaaatcctccaaatcggcggcaggcaaggcggctggaacc
aagaccactgcggccaagaccagcaagcctgccacgtccaaagccaaagcccccaaggcg
gcagccgccgagaagggtgaggccgtggcggatgcggcagaaccggcgcccaagctgaaa
tcgacccgcacccgcaccacaagcagcgccaaggccaaagccaaggctgccgccgaggcg
gaagccgcagcggcagcacccgaggccgacgttgcagcagccccggttgttgaggcgcct
gttgccgcgccggtggccgaagtgccgccgcagcccgcagcgcccgtgcttcaggcagat
ccgggaatggagcccgtgctggaagccgtcagcgccgatccggcagaagccgaggctgcc
gaggacgacgagccgaaggccaaacgcaagggctggtggtcgctgggccgctga
DBGET
integrated database retrieval system
