Gallus gallus (chicken): 101747382
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Entry
101747382 CDS
T01006
Symbol
COL2A1L
Name
(RefSeq) collagen alpha-1(XXVII) chain isoform X6
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
gga
Gallus gallus (chicken)
Pathway
gga04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gga00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
101747382 (COL2A1L)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
gga00536
]
101747382 (COL2A1L)
Glycosaminoglycan binding proteins [BR:
gga00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101747382 (COL2A1L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_1
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
101747382
NCBI-ProteinID:
XP_015135169
CGNC:
66885
LinkDB
All DBs
Position
17:2732326..2775803
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AA seq
1679 aa
AA seq
DB search
MRCGALALALLCALPLGAAGLELPETGSGLQADEVNLLDKVTSHAQDLSNVSFSYDEANC
STLQIGQYSTLSIPTQEVFGDRFADELSVLMKLRYSLQEDTSLVTILSHRSHVLFQIRVS
PHGLVFVTTRKRHYEFPVSLLSDGRWHRIALSISQESLELHVDCRLVERASWPGYLGMGV
GTEGLLIIGGLVESFEIPFEGALQQLTFVMGDAAAAGEHCRSHTVTCVRSSGLSPPPRDR
SAAWPEDSKLSHSDLTLGPPWTWEDAQETLSLQPDGSTRTLFSAAEVPTAEEQEEEEGSL
SIEDEGFELLNSTYNKVTDPGKPGISRSRPRIIGIPRPSAKKEQASDPGQENITTEKLKG
NADTHLHLPPIKPGGATKPIASSKVSPSRHQAAAPKGSSGMAAGDPEHPPTPLRNPILPS
VRGYWARVKPGPPGLPGPPGLPGCPGRRGLVGPKGDKGHAGAMGRMGPPGDPGPMGVPGI
PTVVLWRNSREDWLSFTQSSFYQLLHAGWPRKPGAPGPPGHPGKAGVPGLCGEPGEPGEK
GQRGYTGKPGLQGWPGRAGQPGLDGSPGLGGKPGLCGLPGEQGLQGFRGDRGLAGEKGEE
GFLGDPGPAGEKGEKGMKGVKGESGLPGPAGAHGMAGLKGAMGFQGPAGPEGEGGSVGAS
GPAGPMGQPGQPGSVGCQGVNGSQGEMGPPGLPGPHGPKGPQGLQGRRGPPGLGGMQGPA
GMEGSSGPKGDAGTEGVPGMRGQPGQEGPVGFIGLPGSKGVQGERGCRGPSGAKGELGAK
GDKGLHGAPGAVGPPGLRGQMGSLGFPGPRGAAGPRGPEGEEGQMGPMGLNSSEGPKGGR
GPDGPKGMPGPRGARGRGGQRGLVGAPGAPGSRGIPGAEGTEGKPGIQGPPGAVGSPGRM
GAPGFVGVQGGRGHTGPPGPTGPQGKPGADGDLGCMGPKGLPGKPGLEGPQGPVGMYGYP
GLAGDRGKPGHRGEKGEAGARGPPGFPGKAGPKAPPGRPGPRGAPGSQGRAGEPGPRGLP
GLPGAPGVRGLHGMPGKPGLAGEIGAPGAAGAAGPPGYPGREGPRGPEGPSGMRGEQGVL
GDPGEAGVSGLDGEQGPPGPVGAEGRPGLKGQQGDAGPRGAPGVSGACGERGERGPAGLP
GGPGQQGKEGDVGDAGELGEPGPRGRKQGDAGPQGPPGVPGLGAAPGEAGEKGHKGEKGQ
EGLLGQLGVSGAAGPAGARGRSGGTGLRGPPGLHGLEGVKGDAGPCGRDGAAGAAGLEGP
AGEDGAKGDPGHPGPVGSVGARGRPGGPGFKGYIGHRGAGGAAGTRGQPGRQGPLGPPGN
AGVPGSGGIEGVVGAKGEPGTVGEPGHTGSPGPAGPPGQKGHKGEKGDVGQEGPEGAPGE
AGRRGKRGKVGHRAPRGPRGPKGHQGAEGLAGPQGLQGLYGIPGLKGFVGDPGHKGPKGE
KGSRGHQGQHGDDGFKGKHGPQGTPGRPGPKGEQGDTGPPGPRGLPGLPGKPGLPGQKGL
KGFLGHPGARGKPGPPGLAGPPGPSGPALMLSEEELWHLIYPADCLNRTTVLALLHTLSR
ELRALVEHPDGTKDKPAATCKELLLAHPNLPDGHYYIDPNQGSTRDALVAFCNFTAGGET
CIPPVHNQVPIKAWLSSYASSDTFEWFSTLPGGFMGCIPSWLWGPYTPCLSGCPRSWST
NT seq
5040 nt
NT seq
+upstream
nt +downstream
nt
atgcgctgcggggcgctggctctggcgctgctctgcgcgctgcccctgggagcggcgggg
ctggagcttcccgagacgggctcggggctgcaggcagatgaagtgaacctgctggacaaa
gtgacttcccatgcccaggacctcagcaacgtttccttcagctacgacgaggccaactgc
agcacattgcagatcgggcagtactccaccctcagcattcctacccaggaggtgtttggg
gacaggtttgcagatgagctgagtgtgctgatgaagctcagatactccctgcaggaggac
accagcctggtgaccatcctgagccaccggagccacgtgctcttccagatccgggttagc
ccacatggcttggtctttgtcaccacgaggaagaggcattatgagttccctgtttccctg
ctcagcgatgggcgctggcaccgaattgctctcagcatctcccaggagagcctggagctg
cacgtggactgtcggctggtggagagagccagctggcctggctacctggggatgggtgtg
ggcaccgaggggctgctcatcatcggaggtctggtggagtcctttgagatcccctttgag
ggtgctctgcagcagctgacctttgtgatgggggatgcagcagcagccggtgagcactgc
cgcagccacaccgtgacatgtgtgcgctcctctggcctcagtcctcctccgagggaccgc
tctgcagcatggccagaggattccaaactctcccattcagatttgaccttgggcccacct
tggacatgggaggatgcccaggagacccttagcctgcagccggatgggagcacccggact
ttgttctctgctgccgaggtcccaacagctgaagagcaggaggaagaagagggaagcctt
tctattgaggatgaaggctttgagctgttgaactccacctataataaagtcactgaccct
ggcaagccagggatcagcaggagcagaccacggatcattggcatccccaggccatcagcc
aagaaggagcaagcctctgaccctgggcaggagaacatcaccacggagaagctgaagggc
aatgcagacacccaccttcacctcccacccatcaaacctggcggtgccaccaagcccatt
gcctcctccaaagtgtccccatcgagacaccaggcagctgcacccaagggttcctcaggg
atggctgcaggggatccagagcatcctcccacccccctgagaaaccccatcttgccatca
gtgcgtggatattgggctcgtgtgaagccaggacccccagggctgccgggacccccaggg
ctgcctggatgccctgggagacgtggactggtgggccccaagggagacaaaggtcacgcc
ggagccatggggcggatgggacccccaggagacccaggccctatgggcgtccccggcatc
cccaccgttgtcctctggaggaactcccgcgaggattggctgagcttcacacaatcatcc
ttttaccagctgctgcacgctggctggccgagaaaacccggagcccccggccccccaggg
cacccagggaaagcaggagtgccggggctgtgtggggagccgggagagccgggggagaag
ggccagcgggggtacacgggcaaaccggggctgcagggctggccgggtcgtgcagggcag
cctggcttggatgggtcccctggcttagggggcaaacctgggctgtgtgggctgcctggc
gagcaggggctgcagggcttccgtggggaccgggggctggctggtgagaagggagaagag
ggcttcttgggtgaccctggacctgctggggagaaaggcgagaagggaatgaagggggtg
aaaggggagagcggcctgcctggtcctgctggggctcacgggatggcaggtctgaagggt
gcaatgggcttccagggccctgcagggccggagggagaaggtggttcagtgggtgcctca
ggccctgctggccctatgggacagccaggccagccaggctctgttgggtgccaaggagtc
aacggctctcagggagagatgggtcctcccggcttgcctgggccccacggacccaaggga
ccacagggcttgcaggggcggcgtggcccccccggcctcgggggtatgcagggtccggct
gggatggaggggtcctccggtcccaaaggagacgctggcacagagggggttcctggaatg
aggggacaaccaggacaggagggacctgtggggtttattggcctgccaggttccaaaggc
gtccaaggagagcggggctgccggggtcccagcggagccaagggagagctgggagccaaa
ggagacaagggtctgcatggagcaccaggagctgtgggtcccccagggctgcggggccag
atgggctcactgggcttccccggaccccgcggggcagcaggaccccggggacctgaggga
gaggaagggcagatgggtccaatgggactgaacagcagcgaaggaccgaagggaggccga
ggacccgatggcccaaaggggatgccaggaccgcggggcgccaggggccgtgggggccag
cgtgggctggttggagccccaggagcacctggctcaagaggcatccctggagcagaaggc
acagaaggaaagcctggtatacagggtcccccaggggctgtgggcagcccaggcaggatg
ggagcaccgggttttgtcggtgtgcaggggggcagagggcacacaggacctcctggaccc
acagggccccaaggaaaacctggagctgatggagacctgggttgcatgggtccaaagggt
ctgcctgggaaacctggcttggagggaccgcaggggccggtcggcatgtatggctaccca
ggactggctggcgaccgtgggaagccaggacacaggggagaaaagggagaagctggagcc
cgaggcccaccaggattccctggaaaagctggtcccaaggccccaccaggccgccctggt
ccacgaggtgctcctggctcccaggggagagcaggagagccgggtcctcgggggctccca
gggctgccgggagctcctggtgtgcgggggctgcatggtatgcctgggaagcctggctta
gcgggggaaataggagcacctggagcagcaggggctgctggccctcctgggtacccgggc
cgagaaggtccaagaggacctgaggggccttcggggatgcgaggcgagcagggtgtcctg
ggggatcccggggaagctggcgtcagtgggctggatggtgagcagggacctccaggacct
gtgggagctgaggggcggccggggctcaagggccagcagggcgatgcaggacctcgtgga
gctccgggtgtcagcggtgcttgtggggagcgaggggaacgtgggccagcagggctgcca
ggggggcccgggcagcagggaaaggagggggatgttggtgatgctggagagctgggtgag
ccgggaccgcggggacgaaagcagggagatgctggcccccagggccctcctggggtgccg
ggactgggagctgcaccgggggaggctggagagaaaggccacaaaggagagaagggccag
gaggggctgctgggccagcttggtgtcagcggtgctgcaggacccgccggagcccgggga
cgctctggtgggacaggtctgcgaggccctcccgggctccatggtcttgaaggagtgaag
ggtgatgcaggaccctgcggcagggatggagctgccggagcagctgggctggagggaccc
gcaggagaggatggagcaaagggagaccccggccatcctggccctgtgggctcagtgggt
gcacgtgggcggccgggcggccctggcttcaagggctacattgggcaccgaggagctggg
ggagcagcgggcacacgggggcagccgggccgacagggtcctcttgggccgccaggcaat
gctggagtcccgggctctggtggcattgagggcgttgtgggtgccaaaggggagccaggc
acagtgggagaaccagggcacacgggctctccaggaccagccggtcccccagggcagaaa
ggtcacaaaggagaaaagggtgatgtggggcaggaagggccagaaggagctcctggagaa
gctggcagacggggcaagcgaggcaaggtggggcaccgggcccccaggggcccccgcgga
cccaagggccatcaaggtgccgaggggctggcagggccccagggcctacaaggactatat
ggcatccctgggctgaagggcttcgtaggcgaccctggccacaaaggacccaagggtgag
aagggcagcaggggccaccaagggcagcacggggacgatggcttcaagggcaagcatgga
ccccagggcactcctgggcgaccagggcccaagggagagcagggtgacactggccccccc
ggcccacggggactgcctgggctccctgggaagccgggcttgccaggacagaaggggctg
aaaggtttcctgggccacccgggagccaggggcaagccaggaccaccggggctggctggt
cctcccggtcccagcgggccagcactgatgctatctgaggaggagctatggcacctgatt
tatcccgccgactgcctgaaccgtaccacagtgctggctctgctgcacaccctgagccgt
gagctgagagcactcgttgagcaccccgatggcaccaaggacaaacccgcggccacctgc
aaggagctgctgctggcccaccccaacctgcccgatgggcattactacatcgaccccaac
cagggcagcacccgggatgccctcgtggccttctgcaacttcacggcagggggtgagacc
tgcatacctcccgtacacaaccaggtccccatcaaagcctggctgagctcctacgcctcc
tcggacacctttgagtggttcagcactctgcccggaggcttcatgggttgcatcccatcc
tggctttggggaccctacaccccatgtctctctggttgtccccgtagctggagtacgtag
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