Gallus gallus (chicken): 101747858
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Entry
101747858 CDS
T01006
Symbol
C9orf84
Name
(RefSeq) protein shortage in chiasmata 1 ortholog isoform X1
KO
K28108
shortage in chiasmata 1
Organism
gga
Gallus gallus (chicken)
Brite
KEGG Orthology (KO) [BR:
gga00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
gga03036
]
101747858 (C9orf84)
Chromosome and associated proteins [BR:
gga03036
]
Eukaryotic type
Meiosis-specific proteins
Others
101747858 (C9orf84)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SHOC1_ATPase
SHOC1_PDDEXK
SHOC1_HhH_tandem
SHOC1_2HhH
CsiE_C
Motif
Other DBs
NCBI-GeneID:
101747858
NCBI-ProteinID:
XP_040512258
CGNC:
67351
LinkDB
All DBs
Position
Z:67020880..67073586
Genome browser
AA seq
1544 aa
AA seq
DB search
MVPCSPTASILSTDSCRPTDKYWRHHKTGKMFAALKYHSTDYLYESMARQKYSICRLSLC
FPPYLRQHEKYHLTGLFAHDKYRKPWTRITSTQNMIAVSVLDQWKKSLSVEDFLEKKPIS
SVGLYVNNELIASSNPNSQIDTETHYLLEKVVCEEVSAQEKYLKINCAIELKEQWQDLHV
EDEFVFVDDLENYHKKLPNLSTLLGRLKFFCVRDPLLDSEGENLTEENIFRECLTFQNEI
QMQKSKNELQGIKEDFCKTTLEDKEYFMLPFELEFCKSSNSKSDSIKIPSYLELKELLNL
ASENMADGNMREEVTKEDLKEKIVNKMEIAKYCPTPMVSSSSSISMLEISESANHISYLK
DEMEVPLTPPCKQQRSQVNFLCVGLQEELNPLFDNSILITEPSREYLDSLVWQSEKYWDN
VSSLLLVECQSFKLEYQHHSLTELKKILSIDVETPMLTSLEKDWWLHMGLDLVCVNTLEQ
LKRNSNSTNSLLSTEVETFTQFSVHQLERWPEEKNYIADQELLSSERHEMDEVTDLCMSP
QTTMQHFGLPINAASSLKIDRTNTSLENVAGGRIQKSKIEKPVYFINREERTDKSLVSVS
CKDVPFEQHNSSEGQKLTSFTLDSKWDNDDSDLNNFIMLRCKHTIAQRQEKNGVDSPEKV
LQPEELHLPDHKEDVSVCEPARTEKKEEENDSSVIVKIQASESQCQSYCLLKGAAASALQ
DLTRLGVLASVSWSFDNIKFDHTRFFLKQQEKVISDHFKEGKVDEKEVMLFRHAALVHLL
VTCRDLLLTCGLDTALGYLSKAKDICKNILESCLNTIWRQLKIVQYSSQKKHESSPKLTE
LQCRMLNWMQTNAEEHCIKVLKGCNETSPESSLLQGEQAQLLTSFFVGEMLQPSDHLCGP
HLDSPQQLCVLVLRAPDLASVFKILIIIRMDSEREKAALIHTVSRVEGLKAIDLNSEKKE
NILGYKDIISNRCACVIIQNQNIGADFPWQHFSLVIEYDYSENSCWKRQCENLNITYMAF
KTILPETVQMGNHCGSSLLEVQIPYVFLTTEGLLNMPDFLQLLESHYSITFVERSCSYSL
RLLGDTDRYVVLTVDECTAIFLQNMDELNHEKSCENVILKLTALSLQYTCCWVVFCSRER
LSLEYSLRGDTLLSLALIYATLIEFTQKSEDFEVKVVLTPGIEEAALLIRQIADNILMTS
SFSPHEWLDKSWLSVLPSEMEKHLLTFPCINPLVAQLMLKKETSLNRLFLASFDQLQKFL
PEVPKKVLKHFSDITSSYSINAAPPLKTTVKRPSPPENWNTFERLYPDYKQNSQSLVLPP
QAQTSTGPSHVNSEATFLPLKYNQGFINSSLSSCMHERPCFSEVAPERKENFFVVPRSCE
DFAHLNATNSFHVKGQAFRTHYVSDRCSKTSEKDFFTTFSDCIPPDSSTAFLEEFRDTAF
KSPEILIDETPWNDFPSTSTYNSFATNLIHSDSLVDPDEIQTPCSQNQGREPSGKRKRSA
PFLWAKGKKLTDLGFEQVPRTKKRRLMYERVPGRADGQTRLKFF
NT seq
4635 nt
NT seq
+upstream
nt +downstream
nt
atggttccgtgctctcccacagcgagcatcctcagcacagacagctgtcggcccactgac
aagtattggagacatcacaaaacaggaaagatgtttgcagctttaaagtatcactcaaca
gactatttatatgagagcatggcaaggcaaaagtattccatctgtagattatcactttgc
tttcctccctatttacgacaacatgaaaagtatcatctgactggactttttgctcatgat
aagtacaggaagccctggacaagaattacttcaacacagaacatgattgctgtttcagtg
ttggatcaatggaagaaaagtttatctgtggaggatttcctggaaaagaaacctatcagt
tctgtagggctctatgtcaataatgaattaatagcaagttcaaatcccaactctcagatt
gacacagaaacacattatttactcgagaaagttgtttgtgaggaagtatcagctcaagag
aaatatttgaagatcaactgtgccattgagcttaaggaacagtggcaagatctacatgtt
gaagatgaatttgtttttgttgatgatctggaaaactatcataaaaaacttcctaattta
tctacacttctgggcagactaaaatttttttgtgtgagagatcctcttttagattctgaa
ggagagaatttaacagaagagaacatttttagggaatgtttgactttccaaaatgaaata
caaatgcagaagagtaagaatgaattgcaaggaattaaggaggacttctgtaaaacaaca
ttagaagataaagagtatttcatgttgccttttgagttagaattctgcaaaagcagcaac
agcaaatcagattccattaagattccatcatatttggaattgaaggagttattaaattta
gcttcagaaaatatggctgatggaaatatgcgtgaagaggtgaccaaagaagatctcaaa
gaaaaaattgtgaacaaaatggaaattgcaaaatactgtcctactccaatggttagctcc
agtagcagcataagtatgttggaaatctctgaatcagccaatcacatctcatatctgaaa
gatgaaatggaagtacctctaactcctccgtgcaaacaacaaagatcgcaggtgaatttt
ctctgtgtaggacttcaagaagaacttaatcctctttttgataacagtattttgattaca
gagccctctagggaatacttagactctttggtatggcaatcagagaagtactgggataat
gtgagctctcttttgcttgtcgagtgtcagagctttaaacttgaatatcagcaccattct
ctcacagaactgaagaaaatactgtcaattgatgtagaaacaccaatgcttacctcacta
gagaaagactggtggcttcatatgggattagatctggtctgcgttaatactttggagcaa
ttaaagaggaattccaatagtacaaacagtttgctttctacagaagtagaaacattcaca
cagttttctgtacatcagttagaaagatggcctgaagagaagaattacattgcagatcag
gaattgctttctagtgaaagacatgagatggacgaagtaactgatctttgtatgtcacct
cagaccacgatgcagcactttggcctgcctataaatgctgcatcttctctcaaaatagac
agaacaaatacatctctggaaaatgttgctggaggacgtatacaaaagagtaagatagaa
aagcctgtttatttcataaaccgagaagagaggacagacaaatcacttgtgtccgtcagc
tgtaaagatgtgccttttgaacagcacaactcttctgagggtcaaaagctcacatcattc
acacttgattcaaaatgggacaatgatgattctgatctgaacaactttataatgctcagg
tgtaaacacacgatcgctcaaagacaggaaaaaaatggcgtagatagtcctgaaaaagtg
ctacagcctgaagaactacatttacctgatcataaagaggacgtttctgtttgtgagcct
gcaagaacagagaaaaaagaggaagagaatgacagcagtgtcatagtcaaaattcaagca
tcagaaagccaatgccagtcatactgtctgctgaagggtgcagctgcttctgctttgcaa
gacttgacacgtctgggtgtacttgcttctgtaagttggagcttcgacaacattaagttc
gatcacacaagatttttcctaaaacagcaggagaaggtgataagtgatcattttaaagaa
ggtaaagtggatgagaaagaggtcatgctgttcagacatgctgctctggtgcatctgctg
gtgacatgtcgagaccttctgttaacatgtggcttggacacagcactaggatatttgtct
aaagcaaaggatatctgtaaaaacatcttagaatcctgtttgaacactatctggaggcag
ctgaagattgtacagtacagcagccagaaaaaacatgaatccagtcccaaactcacagag
cttcagtgtcgaatgttaaattggatgcaaactaatgcggaggaacactgtattaaggta
ctaaaaggttgtaatgagacctccccagagtcttctcttctccaaggtgaacaagcccag
cttcttacatctttcttcgtaggagagatgctccagccctctgaccatctttgtggccct
catctggactcaccccaacagctctgtgtccttgtgctgcgggccccagacttggcctca
gtattcaagatactaatcataataagaatggactcagagagagaaaaagcagctctcatt
cacactgtatctagagtagaaggtttaaaagctattgatttgaattctgagaaaaaagaa
aacattctgggctataaagatatcatcagcaatagatgtgcctgtgttattatacaaaat
cagaacattggagctgacttcccttggcaacacttctcattagtgatagaatatgattat
tctgaaaattcttgctggaaaagacagtgtgaaaatctaaatattacatacatggctttt
aaaaccatcctccctgaaacagtacaaatggggaatcactgtggttcatctcttctggag
gtacagattccttatgtgtttctcaccactgaaggtcttcttaatatgccagattttctt
cagcttttggaatctcactacagcattacttttgttgaaagaagctgcagttactcctta
aggctacttggagatacagatcgatatgttgtgttgacagtagatgaatgtactgctatc
ttcttgcagaatatggatgaattaaatcatgagaagtcctgcgaaaatgtaatattgaag
ctgacagcattatcactccaatatacatgttgttgggttgttttctgctccagagaaaga
ctgagtttggagtacagtcttaggggagatactcttctcagccttgccttaatttatgcc
actttgatagaatttacacagaagtcagaagactttgaagtgaaggtagttcttacacca
gggattgaagaggcagcactgctaattcgtcaaatagctgacaacattttgatgacatct
agtttcagtcctcatgaatggctggacaaatcttggctttctgtcttgccatcagagatg
gagaaacacttgcttacttttccatgtatcaaccctctggttgctcagctgatgttaaag
aaggaaacttctttgaacaggctttttcttgcaagctttgatcaacttcagaaattccta
ccagaggttccaaaaaaagttctaaagcattttagtgacattacgtcttcgtacagcata
aatgctgctcctccactgaaaacaacagtgaaacgtccatcacctccagaaaactggaat
acctttgaaagactctatccagattataaacaaaattctcagtctttagtgttgccacct
caagcacaaaccagcacagggccatctcacgtgaattctgaagccacatttcttccattg
aaatataatcaaggttttatcaactccagcctttcaagctgtatgcatgagagaccgtgt
ttttcagaagtagctccagagaggaaagagaatttctttgttgtaccaaggagctgtgaa
gattttgctcatctaaatgctacaaattcttttcatgttaaaggtcaggctttcaggaca
cactatgtctctgatcgttgctcaaaaacttctgaaaaagatttctttacaactttcagt
gactgcatacctcctgacagctctacagcttttctggaagaatttagagacacagcattt
aagagcccagaaattctgattgatgagactccatggaatgactttccatccacttccacg
tacaattcatttgcaactaacttaattcactctgattctcttgttgatccagatgaaatt
caaactccatgttcccaaaaccagggtcgagaaccttcaggaaagagaaagcgaagtgca
ccattcttatgggcaaaaggaaaaaaactaacagatttgggatttgaacaagtaccaaga
actaaaaaaaggagattgatgtatgagagagtccctggaagagctgatggacaaacacgt
cttaaattcttttga
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integrated database retrieval system
