Gallus gallus (chicken): 374046
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Entry
374046 CDS
T01006
Symbol
COL11A1
Name
(RefSeq) collagen alpha-1(XI) chain isoform X7
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
gga
Gallus gallus (chicken)
Pathway
gga04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gga00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
374046 (COL11A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
gga00536
]
374046 (COL11A1)
Glycosaminoglycan binding proteins [BR:
gga00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
374046 (COL11A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
374046
NCBI-ProteinID:
XP_001231624
CGNC:
49019
LinkDB
All DBs
Position
8:11576206..11743370
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AA seq
1819 aa
AA seq
DB search
MKMQRWSTRWKTKRWPWDSAVIVLITLAILLQAAEVRGAEPVDVLKVLEFHNSPEGVSRT
AGFCTNRRDSKGSDVAYRVSKTAQLSAPTKQLYPDGDFPEDFSILMTVKPKKGIQSFLLS
VYNEQGIQQVGVEVGRSPVFLFEDQNGNPAPEDYPLFRTVNIADGKWHRVAISVEKKSIT
MIVDCNKKTTKPLERSGKPVVDTNGITVFGTRILDEEVFEGEIQQLLIIADPRAAYDYCE
HYSPDCDSPVPNAAQAQDPQVDEKRKAMVKKKKRTVATSSKDKSQKATTKKSEKYASKKK
KSYQAATKDKLGVKANIVDEFQEYSVAGNDYGPRTEAPSRTTEANEQKPVEEVFAEEYIT
GEDYDKKTEETEYGSRGVDLSESDLLVDGDLGEYDFYEYKEYEEKPTDSTNEEFGPGVPA
ETDITETSVTQHGAYGEKGQKGEPAVIEPGMLIEGPPGPRGPAGLTGPPGLQGPVGPPGD
PGERGPPGRPGLPGADGLAGPPGTMLMLPFRFGGDGEKGPTISAQEAQAQAILQQARIAM
RGPPGPMGLTGRPGPVGGPGAAGAKGESGEPGPQGPRGVQGAPGPSGKAGKRGRPGADGA
RGMPGEPGAKGDRGFDGLPGLPGDKGNRGDRGPQGPPGLPGEDGSRGEDGEVGPRGLPGE
AGPRGLLGPRGTPGPPGQPGIAGIDGPSGPKGNMGPQGEPGPPGQQGIPGPQGLPGPQGP
IGPPGEKGPQGKPGLPGLPGSDGPPGHPGKEGQSGEKGALGPPGPQGPVGYPGPRGVKGA
DGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQPGPRGEDGPEGPKGRAGPSGDPGA
AGPAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGLHGKPGPRGQRGPTGP
RGSRGPRGPTGKPGPKGTSGNDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGH
PGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGA
KGDPGPQGIPGKDGPAGLRGFPGERGLPGAQGPAGLKGGEGPQGPPGPVGSPGERGAAGT
AGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPSGSPGEDGD
KGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGP
RGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSIGS
VGGVGEKGEPGEAGNPGPPGESGTSGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGN
PGPVGFPGDPGPPGEPGPAGQDGVGGEKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGA
TGAEGRQGEKGAKGEPGAEGAPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAPGQ
DGPPGPLGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGAKGD
AGISGPAGPLGPPGPPGLPGPQGPKGSKGSSGPAGQKGDSGLPGPPGPPGPPGEVIQPLP
IQSPKKTRRSPDYMVSDAGDNILDYSDGMEEIFGSLNSLKQDIEYMKYPMGTQNNPARTC
KDLQLCHPDFPDGEYWIDPNQGCSGDSFKVYCNFTAGGETCIYPDKKSEGVRISSWPKEN
PGSWFSEFKRGKLLSYVDVEGNSINMVQMTFLKLLSASARQNFTYNCHQSVAWHDASTDS
YDKALRFLGSNDEEMSYDNNPYIKALLDGCASRKGYAKTVIEINTPKIDQVPIVDVMIND
FGDQSQKFGFEVGPVCFLG
NT seq
5460 nt
NT seq
+upstream
nt +downstream
nt
atgaagatgcagaggtggtccacgcggtggaaaacgaaaaggtggccctgggactcggcc
gtgatcgtgctcatcaccctcgctatccttctccaggctgcggaggtcagaggagctgaa
ccagttgatgtactaaaagtattagaatttcataattcaccggaaggagtatcaagaaca
gcaggattttgcactaacagaagagattcaaaaggctcagatgttgcctacagagtttca
aaaactgcacagctcagtgccccaacaaagcagctgtacccagatggagattttccagaa
gatttttcaatattgatgacagtaaaacctaaaaagggtatccagtccttccttctgtct
gtctacaatgaacaaggaattcagcaagtaggtgttgaagttggaagatcccctgtcttc
ctctttgaagaccaaaatggaaaccctgccccggaagactatcctcttttcagaacagtc
aacattgctgatggcaagtggcatcgagtagccattagcgtggagaagaaaagcattaca
atgattgttgactgcaacaaaaaaacgacaaaaccactggagagaagtggcaaaccagtt
gtagacactaacggcatcactgtctttggaacaaggattctggatgaagaagtatttgag
ggtgagatccaacagttgttgattatagctgaccctagagctgcatatgactattgcgaa
cattatagtccagactgtgattccccagtgcctaatgctgctcaggctcaagatcctcaa
gttgatgagaaaaggaaagccatggtcaaaaagaagaagaggacagtggccactagctca
aaggacaaatcccaaaaggccacaacaaaaaaatctgaaaaatatgcatccaagaagaag
aaaagttatcaagcagcaacaaaagacaaactaggggtaaaagcaaacattgttgatgaa
tttcaagaatatagcgtagctggaaatgactatgggccccggacagaagcaccctccaga
actactgaagccaatgagcaaaaacctgttgaagaagtatttgctgaagaatacataact
ggagaggattatgataaaaaaactgaggaaactgaatatggaagcagaggagtagacctc
agtgaatctgatcttctggtagatggagatttaggcgaatatgatttttatgaatataaa
gaatatgaagagaaaccgactgattctactaatgaggagtttggtccaggtgttcctgca
gagactgatatcacagaaacaagcgtaacacaacatggggcttatggagaaaaaggacaa
aagggagaaccagctgtgattgaacccggtatgctcattgaaggaccgccgggaccaaga
ggacctgctggtcttacgggtcctccaggcttacaaggtcctgttggtcctccaggtgac
cctggtgaaaggggtccacctggtcgtcctggtctccctggtgctgatggtttagcaggt
cccccaggtaccatgttaatgctgccgttccgctttggtggagatggtgagaaaggccca
acaatctcagctcaggaggctcaagcacaagctattcttcagcaagcaaggattgcaatg
agaggtccacctggtcctatgggactcactggaagaccaggtcctgtgggaggacctgga
gcagcaggtgctaagggagaaagtggtgaaccaggtcctcagggtcctcgtggtgttcaa
ggtgcccctggtccaagtggaaaagctggcaaaaggggacggcctggagctgatggtgcc
agaggaatgccaggagaacctggtgcaaagggtgacagaggatttgatggtcttcctggc
ctccctggtgacaaaggtaacaggggagatcgtggcccacagggacctcctggtttacct
ggtgaagatggatcaagaggagaagatggggaagttggaccaagaggtctcccaggtgaa
gctggtccacggggactactgggccccagaggtacacctggtccccctggacaacctggc
attgcaggtattgatggaccttcaggcccaaagggaaacatgggtcctcaaggggagcca
ggaccccctggtcagcaaggaatcccaggcccacaaggccttcctggtccacaaggtcct
attggacctcctggtgaaaaaggacctcaaggcaagccaggccttcctggccttcctggt
tctgatgggcctcctggtcatcctggcaaagagggtcagtctggagagaaaggtgcattg
gggcctccaggtcctcaaggtccagttggttatccaggtcctcggggagtaaagggagct
gatggtgttcgtggtctcaagggatccaaaggtgaaaagggtgaagatggtttcccagga
tttaagggtgacatgggccttaaaggtgatcggggagaagttggtcaacctggcccacga
ggagaagatggtccagaaggtccaaaaggtcgagcaggtccatctggggacccaggtgct
gctggtccagctggggaaaagggtaagcttggtgtacctggattgccaggatatccagga
agacaaggtccaaagggctcaactggtttcccaggatttccaggtgccaatggagagaaa
ggtgcaaggggattacatggcaaaccaggccccagaggacagcgaggaccaacaggtcca
agaggctcaagaggcccaagaggtcccacaggcaaaccaggtccaaagggtacttcaggc
aatgatggtccgcctggcccaccaggtgaaaggggaccacaagggcctcaaggacctgtt
ggatttcctggaccaaagggacccccagggccacctggtaaagatggcttgcctggacat
ccaggacagcggggtgagactggatttcaaggaaaaactggtcctcctggtcctggtggg
gttgttggccctcagggtcctactggtgagactggcccaattggtgaaagaggtcatcca
ggtcctcctggcccaccaggtgaacaaggcctcccaggtgctgcaggaaaagaaggtgct
aagggtgacccaggtcctcaaggtattcctgggaaagatggaccagcaggtcttcgtggt
ttccctggagagagaggccttccaggagcgcagggtcccgctggtctaaaaggaggggaa
ggcccacaaggtccacctggccctgttggctcaccaggggaacgtggagcagcaggcact
gctggtccaattggtctaccaggtcgtcctggacctcagggtcctccaggccctgcaggg
gagaagggtgctcctggtgaaaaaggtcctcaaggtccagctggacgtgatggagtacaa
ggtcctgtaggacttcctggtcctgctggtccaagtggttctcctggagaagatggtgac
aagggtgaaattggtgaaccgggtcaaaaaggtagtaaaggtgacaagggagaaaacggt
cctccaggtccaccaggtctccagggtcctgttggtgctcctggcatagctggaggtgat
ggggagccaggcccaagaggtcagcaaggaatgtttggacaaaaaggtgatgaaggtcct
cgaggcttccctggccctccaggccctattggcttacagggtttgcctggcccaccaggt
gaaaaaggtgaaaatggggatgtgggcccgatgggtccgcctggtcctccaggtccaaga
ggcccccaaggtcctaatggagctgatggtcctcaaggccccccaggctcaatcggctct
gttggaggtgttggggaaaagggtgaacctggagaagctggtaatcctggacctcctgga
gaatctggaacatctggtccaaaaggtgaaaggggagaaaaaggtgaggctggtccacct
ggagcagctggaccaccaggtgctaaaggacctccaggtgatgatgggcctaagggtaac
ccaggtccggttggttttcctggagatcctggtccccctggagagcctggtccagctggt
caagatggtgttggtggagaaaagggtgaagatggtgatcctggtcaacctggtccacca
ggtccttcaggagaagctggcccacctggtccacctggaaagagaggacctcctggagca
actggagctgaaggcagacaaggtgaaaaaggtgcaaagggtgaacctggtgcagaagga
gctcctggaaaaacaggtccagttggtcctcagggaccagcaggaaaacctggccctgaa
ggtctccggggcattcctggccctgtgggagaacaaggtctacctggagcaccaggccag
gatggccctcctgggccactgggcccacctggcttgcctggtctgaaaggagatccagga
tccaaaggagagaagggacatcctggtttgattggcctgattggacctccaggagaacaa
ggtgaaaagggtgataggggtcttcctggtccacaggggtctcctggagccaaaggtgat
gcaggaatttctggtcctgctggtccactcggaccccctggtcctcctggtttacctggt
ccccaaggtccaaaaggttccaaaggatccagtggtcctgctggccaaaagggtgacagt
ggtttacctggcccacctggtcctccaggtcctccaggtgaagtaattcagccactgcca
atccagtcacccaaaaagactagaagatctcccgattacatggtatctgatgctggtgat
aatattctggattattctgatggcatggaagagatctttggttcactgaattcactgaag
caagacattgagtatatgaagtatccaatgggcactcagaacaacccagcccgaacctgc
aaagacttgcagctctgccacccagacttcccagatggggaatattggattgatcccaac
cagggttgttctggagactccttcaaagtgtattgcaatttcacagcaggtggggaaact
tgcatctacccagataagaaatctgaaggagttagaatttcatcttggccaaaagagaat
ccaggatcttggtttagtgaatttaagcgtggcaaacttctttcatatgtggatgttgaa
ggcaattccattaatatggttcaaatgacattccttaaactactgagtgcctctgccaga
caaaatttcacatacaactgccatcagtctgtagcttggcatgatgcctcaactgacagc
tatgacaaagcactaaggttcttaggatcaaacgatgaagagatgtcttacgacaacaat
ccttacatcaaagcgcttcttgatggctgtgcgtcaagaaagggctacgcaaagacagtg
attgaaatcaacacacccaaaatagaccaagtgcctatagttgatgtgatgatcaatgac
tttggcgatcaaagccaaaagtttggatttgaggttggtcctgtctgcttccttggttaa
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integrated database retrieval system
