Gallus gallus (chicken): 395069
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Entry
395069 CDS
T01006
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain precursor
KO
K19719
collagen type II alpha
Organism
gga
Gallus gallus (chicken)
Pathway
gga04510
Focal adhesion
gga04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
gga00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
395069 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
395069 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
gga00536
]
395069 (COL2A1)
Glycosaminoglycan binding proteins [BR:
gga00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
395069 (COL2A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
395069
NCBI-ProteinID:
NP_989757
CGNC:
49161
Ensembl:
ENSGALG00000030712
UniProt:
Q90W37
LinkDB
All DBs
Position
33:7292548..7311106
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AA seq
1420 aa
AA seq
DB search
MHGRRPPRSAALLLLLLLLTAAAAAQDRDLRQPGPKGQKGEPGDIKDVVGPRGPPGPQGP
AGEQGQRGDRGEKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGF
DEKAGGAQMGVMQGPMGPMGPRGPPGPTGAPGPQGFQGNPGEPGEPGAAGPMGPRGPPGP
PGKPGDDGETGKPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGA
KGESGSPGENGSPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGPPGPVGPAGAPGF
PGAPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPAGAPGNPGTDGIPGAKGSAGAPGI
AGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGETGPAGPQGAPGPAGE
EGKRGARGEPGAAGPVGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPAGLAGPKGATGD
PGRPGEPGLPGARGLTGRPGDAGPQGKVGPTGAPGEDGRPGPPGPQGARGQPGVMGFPGP
KGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPVGERGEQGAPGPSGFQGL
PGPPGPPGESGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGT
DGPKGATGPAGPNGAQGPPGLQGMPGERGAAGIAGLKGDRGDVGEKGPEGAPGKDGARGL
TGPIGPPGPAGPNGEKGESGPPGPSGAAGARGAPGERGEPGAPGPAGFAGPPGADGQPGA
KGEQGEPGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGP
PGPNGNPGPPGPPGSAGKDGPKGVRGDAGPPGRAGDPGLQGPAGPPGEKGEPGEDGPAGP
DGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGSAGDRGPPGPVGPPGL
TGPAGEPGREGNPGADGLPGRDGAAGVKGDRGETGPVGAPGAPGAPGAPGPVGPTGKQGD
RGETGAQGPMGPSGPAGARGMPGPQGPRGDKGETGEAGERGLKGHRGFTGLQGLPGPPGP
SGDQGAAGPAGPSGPRGPPGPVGPSGKDGSNGMPGPIGPPGPRGRSGEPGPAGPPGNPGP
PGPPGPPGTGIDMSAFAGLGQTEKGPDPIRYMRADEAAGGLRQHDVEVDATLKSLNNQIE
SIRSPEGSKKNPARTCRDIKLCHPEWKSGDYWIDPNQGCTLDAIKVFCNMETGETCVYPT
PSSIPRKNWWTSKTKDKKHVWFAETINGGFHFSYGDENLSPNTASIQMTFLRLLSTEGSQ
NVTYHCKNSIAYMDEETGNLKKAILIQGSNDVEIRAEGNSRFTYSVLEDGCTKHTGKWGK
TVIEYRLQKTSRLSIVDTAPMDIGGADQEFGVDIGPVCFL
NT seq
4263 nt
NT seq
+upstream
nt +downstream
nt
atgcacggccgccgcccgccccgctccgccgctctcctcctcctcctcctccttctcacg
gccgccgcagccgcgcaggaccgcgacctccgacaacctggccccaagggacagaaggga
gaacccggagatattaaagatgttgtaggaccccgagggcctccaggaccacagggccca
gcaggagagcagggacagcgaggggaccgtggcgagaagggggagaagggtgctcctggc
ccccgtgggagggatggagaacccggcacccctggaaacccaggcccccccggtcccccc
ggacctcctggcccccccggacttggtggaaactttgcggcgcagatggcgggcggcttc
gatgagaaggcgggtggagcgcagatgggtgtcatgcagggacccatgggccctatggga
ccccgcggcccccctggccccactggcgcacctggtccccagggatttcaaggcaacccc
ggtgagcccggcgaacccggcgctgctggtccgatgggtccccggggacctccgggacca
cctgggaaacccggtgacgatggtgagacaggcaaacccggcaaatctggtgaacgtggc
ccccccggcccccagggcgctcgtggcttccctgggactcctggtctccccggagtgaag
ggccaccgaggctaccccggtttggatggtgccaaaggagaggcgggggctcctggagcc
aagggtgaatctggttcaccgggtgagaacggctcccccggccccatgggaccccgtggg
ctgcccggagagcgaggacgtcccggcccctccggcgccgccggtgctcgtggcaatgac
ggtctccctggccctgctggaccccctggacccgtcggccctgccggagcccccggcttc
cccggagcccccggttcaaagggtgaagccggccccactggtgcacggggtcccgagggt
gcccaaggaccccgcggcgaatccggcacccccggctctcccggccccgctggcgcaccc
ggtaacccagggactgatggcatccccggtgccaagggctcggcgggtgccccgggcatt
gcaggcgctccaggattccccggcccacgcggcccccccggaccccaaggtgccaccgga
ccactgggacccaaaggacagacgggcgaacccggcatcgcaggcttcaagggcgagcaa
ggaccgaagggcgagacgggccccgcaggaccccaaggtgcccccgggccggctggtgag
gaaggcaagagaggagctcgtggtgaacctggtgccgccggccctgtgggcccccccgga
gaaaggggcgctcctggcaaccgtggattccccgggcaggacgggctggccggacccaag
ggtgctccaggtgaacgcggccccgctggtctcgccggtcccaaaggtgccaccggtgac
cccggacgtcccggagagcccgggctgcccggagcgaggggtctcaccggccgccccggc
gatgcgggacctcaaggcaaagtcggcccaactggtgctcctggcgaggatggccgcccc
ggcccccccggacctcagggtgctcgtgggcagcctggtgtgatgggtttccccggtccc
aaaggcgctaatggtgagcctggaaaagctggagagaaaggactgcccggcgccccaggg
ctgcggggtctgcctggcaaggatggggagacgggagctgccggcccccctggacccgct
ggtcctgtgggtgagagaggagagcaaggagcccccggtccttccggcttccagggactg
cccggaccaccaggtccccctggggagagcggcaaacccggagaccagggtgttcctgga
gaagccggtgcccccggtcttgttggtcccagaggtgaacgtggattccccggtgaacgc
ggctctcccggtgcccaagggctgcagggtccccgtgggctccccggaacgcccggcact
gacggacccaagggtgcaaccggtccagccggccccaacggtgcccagggtcccccaggg
ctgcagggaatgcccggtgagagaggagcagctggcatcgctggcctcaagggtgaccgg
ggagatgttggtgagaaaggacctgagggagctccaggcaaggatggcgcacgtggtctg
acgggtcccattggtccccctggccctgctggccccaacggtgagaagggtgaatccggc
cctcctggtccatctggtgctgccggtgcccgtggtgcccccggtgagcgtggcgagccc
ggtgcccccggtcctgctggatttgctggccccccgggcgccgatggacaacccggtgcc
aaaggcgagcagggagagcccgggcagaagggtgacgcgggcgctcctggtccccaaggt
ccctccggcgctcctggcccccagggcccaaccggtgtcactggtcccaaaggagctcgt
ggggctcagggtccccctggagccacgggattccccggagctgccggccgtgtgggaccg
cccggccctaatggtaacccaggcccccccggaccccctggctctgctggcaaggacggc
cccaagggtgttcgtggcgacgccggcccccccggccgtgcaggtgaccccggcctccaa
ggccccgccggcccccccggcgagaagggcgaacccggcgaggacggccccgcgggtccc
gacggcccccccggccctcaaggcttggcaggacagcgtggtattgtgggtctcccagga
cagcgtggtgagagaggcttccccggactgccggggccatcgggagaacctggaaagcaa
ggagcgcctggctctgcgggtgaccgaggtccccccggccccgtggggccccctgggctg
acgggtcctgctggagaacccgggcgcgagggcaaccctggtgctgacggtctcccaggc
agggatggcgcagctggcgtgaagggtgatcgtggtgagaccggccctgtgggtgccccc
ggtgctcctggagcccctggcgcccccggccctgttggtcccactggaaaacaaggagac
agaggcgagacgggtgcacaagggcccatgggtccctctggtcccgctggagctcgagga
atgccgggtccccaaggacctcgtggtgacaaaggtgagacgggagaggctggagagaga
gggctgaagggccaccgtggcttcaccggtctgcagggtctgcccggaccacccggcccg
tctggagaccaaggtgctgccggtcccgctggtccctccggtcccagaggtccccctggt
cccgtcggcccctctggcaaagatggctctaacggcatgcccggccccatcggtcctccc
ggtccccgtggacggagtggtgaacccggccctgcgggtcctcctggaaaccccggtcct
cccggtcctcctggcccccccggcaccggcatcgacatgtctgcttttgctggactgggt
cagacggagaagggccccgaccccatccgctacatgagggcagacgaggcggccggaggg
ctgcggcagcacgacgtggaggtggatgccaccctcaaatccctcaacaatcagattgag
agcatccgcagccccgagggctccaagaagaaccctgccaggacctgccgcgacatcaaa
ctctgccatcccgagtggaagagcggagattactggattgacccgaaccagggctgcacc
ttggacgccatcaaagtattctgcaacatggagacgggcgagacctgcgtctacccgacc
cccagcagcatccccaggaagaactggtggaccagcaagacgaaagacaagaagcacgtc
tggtttgcagagaccatcaacggcggtttccacttcagctacggcgatgagaacctgtcc
cccaacaccgccagcatccagatgaccttcctgcgcctcctgtccaccgagggctcccag
aacgtcacctaccactgcaagaacagcatcgcctacatggacgaggagacgggcaacctg
aagaaagccatcctcatccagggatccaacgacgtggagatcagagccgagggcaacagc
aggttcacctacagcgtcttggaggacggctgcacgaaacacactggcaaatggggcaag
acggtgatcgagtaccggttgcagaagacctcgcgcctgtccattgtagatactgcacct
atggacattggcggagccgatcaggagtttggcgtggatattggcccagtctgcttcttg
taa
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