Gallus gallus (chicken): 395568
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Entry
395568 CDS
T01006
Symbol
COL5A1
Name
(RefSeq) collagen alpha-1(V) chain precursor
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
gga
Gallus gallus (chicken)
Pathway
gga04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gga00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
395568 (COL5A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
gga00536
]
395568 (COL5A1)
Glycosaminoglycan binding proteins [BR:
gga00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
395568 (COL5A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
395568
NCBI-ProteinID:
NP_990121
CGNC:
49379
Ensembl:
ENSGALG00000002546
UniProt:
Q9IAU4
Q90689
LinkDB
All DBs
Position
17:7734011..7862385
Genome browser
AA seq
1835 aa
AA seq
DB search
MDTHTRWKRRSWIRNWQLHVALVLLGAAALGRAAEPADLLKVLDFHNLPDGITRTTGFCT
SRRSSKEADVAYRVTKDAQLSAPTKQLYPASPFPEDFSILTTVKAKKGGQSFLISIYNEQ
GIQQIGVEMGRSPVFLYEDHTGKPGPEDYPLFRGINLADGKWHRVAISVQKKNVTLILDC
KKKITKFLDRSDHPIIDVNGIIVFGTRILDEEVFEGDIQQLLIVADPRAAHDYCEHYSPD
CDTAVPDAPQSQDPNQDEYYTDGEGEGDTYYYEYPYYEDVDEAVKPEAPTTKPAPPGVAA
GERPETKQDYPSPTPSPEAGNPSRQTKGAAPVDDPLVDEYNYETINEEYFTPLPYEDINY
NEEVDPQGGLTENAVEAELPTSTVITYNETDAAQGGDDLDKDFTEETIKEYDGNYYYYDR
TVSPDIGPGMPANQDTIYEGIGGPRGEKGQKGEPAIIEPGMLVEGPPGPEGPAGLPGPPG
PTGPVGLMGDPGERGPPGRPGLPGADGLPGPPGTMLMLPFRFSGGGDAGSKGPMVSAQEA
QAQAILQQARLALRGPAGPMGLTGRPGPMGPPGSGGLKGEAGEMGPQGPRGIQGPPGPAG
KPGRRGRAGSDGARGMPGQTGPKGDRGFDGLAGLPGEKGNRGEPGPHGPPGAPGEDGERG
DDGEVGPRGLPGEPGPRGLLGPKGPPGPPGPPGVAGMDGQTGPKGNVGPQGEPGPPGQQG
NPGAQGLPGPQGPIGPPGEKGPLGKPGLPGMPGADGPPGHPGKEGPPGEKGSQGPPGPQG
PIGYPGPRGVKGADGVRGLKGTKGEKGEDGFPGFKGDMGIKGDRGEIGPPGPRGEDGPEG
PKGRSGPNGDPGPLGPAGEKGKLGVPGLPGYPGRQGPKGSIGFPGFPGANGEKGTRGTPG
KPGPRGQRGPTGPRGERGPRGSTGKPGPKGNSGGDGPPGPPGERGPPGPQGPTGFPGPKG
PPGPPGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPGPPGPPG
EQGLPGLTGKEGTKGDPGPAGLPGKDGPPGLRGFPGERGLPGPIGSPGLKGNEGPPGPPG
PAGSPGERGPAGSAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGIQGPVGLPG
PAGPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPAGADGEPGPRG
QQGLFGQKGDEGPRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSGPPG
ADGPQGPAGGIGNPGAVGEKGEPGESGEPGLPGEVGLPGPKGERGEKGEAGPSGAAGPPG
PKGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTGEPG
PSGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLRGIPG
PVGEQGLPGSPGPDGPPGPLGPPGLPGLKGDSGPKGEKGHPGLIGLIGPPGEQGEKGDRG
LPGPQGSAGPKGEQGITGPSGPIGPPGPPGLPGPPGPKGAKGSSGPTGPKGESGLPGPPG
PPGPPGEVIQPLPIQSSKRTRRNIDASQLVDDGNADNYMDYADGMEEIFGSLNSLKLEIE
QMKHPLGTQHNPARTCKDLQLCHPDFPDGEYWVDPNQGCSRDSFKVYCNFTAGGETCIFP
DKKSEGARITSWPKENPGSWFSEFKRGKLLSYVDSDGNPIGVVQMTFLRLLSASAHQNIT
YNCYQSVAWHDATTDSYDKAIRFLGSNDEEMSYDNNPYIRAAFDGCAAKKGYQKTVLEIN
TPKVEQVPIVDIMFNDFGEASQKFGFEVGPACFMG
NT seq
5508 nt
NT seq
+upstream
nt +downstream
nt
atggatacgcacacgcgatggaaaaggcgcagttggatacggaactggcagctgcacgtc
gcgctggtgctgctgggcgccgcggccctgggccgggcagctgaacctgcagacctcttg
aaggtattagattttcacaatttacctgatggtatcacaagaacaacagggttttgcaca
agcagaagatcttcaaaagaagcagacgttgcttacagagtaacaaaagatgctcagctc
agcgccccgacaaagcagctgtatcctgcttccccattcccagaggacttctccatttta
accactgtaaaagcgaagaaaggaggtcagtccttcttgatctcaatttacaatgagcaa
gggatccagcaaattggtgtggagatgggtagatctcctgtattcctgtatgaagaccat
acaggaaagccaggcccagaagactatcctctctttagaggcattaacctagcagatggc
aagtggcacagggtcgccatcagcgtgcagaagaaaaacgtcaccttgattttggactgt
aaaaagaaaataaccaagttcttggatcgaagcgaccatcccatcattgacgtcaatggc
atcatcgtatttggaacgaggatattagatgaggaagtctttgagggcgacatccagcag
ctgctgatcgtggccgacccccgggcagcccacgactactgtgagcactacagccccgac
tgtgacaccgccgtccccgatgctccacaatcccaggaccccaaccaggatgaatactat
accgatggggagggagaaggggacacctactactatgagtacccctactatgaagacgtt
gatgaagctgtaaagcctgaagcacccaccaccaaacctgcacccccaggagtggctgct
ggagagagacccgaaaccaagcaggactatccttcccccacgccatcccctgaagcaggg
aaccccagcaggcagaccaaaggggctgcacccgtggacgaccccctggtggatgagtac
aactatgaaaccatcaacgaggagtacttcacacctctgccctatgaagacatcaactac
aacgaagaagtagacccccagggagggctcactgaaaatgcagtggaggcggagctcccc
acgagtaccgtcatcacctacaatgagactgatgctgctcaaggaggagacgacctggat
aaagacttcaccgaggaaacgataaaagaatacgatgggaactactactattatgacaga
acagtgtctcctgacatcgggcctgggatgcctgccaaccaggacaccatctacgaaggg
attggaggcccacggggtgagaaggggcagaagggcgagcctgccattattgagccgggt
atgcttgtggaaggcccccctggtcccgaaggccccgcaggccttccaggacctccagga
ccaaccggacctgtgggcttaatgggagatcctggagagagaggaccgcctggccgccca
ggtcttccaggagcagatggtttaccaggaccaccagggacaatgcttatgttgcctttc
cgcttcagtggaggaggagatgctggctccaaaggacccatggtctctgcccaggaagct
caagcccaggccatcctgcagcaggcgaggttggcactgagaggaccggcgggtccaatg
ggtctgaccgggcggcccggccccatgggacccccaggcagtggaggattgaagggcgaa
gctggagaaatgggacctcagggtccacgaggcatccagggccctcccggcccggcgggg
aagccaggccgcaggggacgagctggcagcgatggtgcccggggaatgccaggacagaca
ggaccaaagggtgaccgagggtttgatggcttggctggtttgcctggcgagaaggggaac
agaggtgagccaggtccccacggccccccgggggcacccggagaggacggggagaggggg
gatgatggagaagttggacccagagggctgcccggagaacctggcccccgaggactgctg
ggacccaaagggccaccaggcccaccggggccaccgggtgtggccggtatggatggacaa
actggtcccaaggggaacgtgggtccccagggtgagccgggacccccaggccagcagggc
aacccaggtgctcagggtcttccaggtccacaaggccccatcggtcccccaggagagaag
gggccgctgggcaaacctggtcttcctggcatgcctggtgcagatggtcctccgggtcat
cctggcaaggaaggtcctcctggagagaaggggagtcagggtccaccaggccctcagggt
cccattggttatccaggtccacgcggagtcaagggagcggatggtgttcgtgggttgaag
ggcaccaaaggtgaaaagggtgaagatggcttccctggcttcaaaggggatatgggcatc
aagggagaccggggtgaaatcggacctccgggccccaggggtgaggatggccctgaaggt
cccaaaggtcgctcgggtcccaacggagaccccggtcctctcggtcctgctggagagaag
ggaaaacttggcgtgccagggctgcccggctacccgggcaggcagggcccaaagggctcc
attggcttcccaggatttccaggcgccaacggcgagaagggcacacgggggacacctggc
aaaccaggtccaagggggcaacgcggtccaacgggtccacgaggggaaagaggccctagg
ggaagcactgggaaacctggcccaaagggcaactctggtggtgatggcccccctggtcct
cctggcgaacggggaccaccagggcctcaaggaccaaccggatttcctggaccaaaaggc
ccccctggtcctcctgggaaggatggattgcctggtcaccccggacagagaggagaaacc
ggtttccaaggcaagactggcccacctggcccccctggtgttgtaggccctcagggccca
actggtgaaactggtccaatgggtgagcgaggacatccaggtcctccgggtcctccgggt
gaacaaggtcttcctggcctcactgggaaggaagggaccaagggggaccccggtcctgct
ggcctcccagggaaggatggtcccccaggcttgcgaggcttccctggagaaagaggtctg
cctggccccattggttctccagggctgaaaggcaacgaaggtcccccaggcccccctggt
cctgcaggctctcctggtgagcgaggtcctgcgggctcagctggccccattggcttacca
gggcgacctggcccacagggacctccgggacctgcaggtgaaaagggagccccgggcgag
aagggtcctcaaggaccagcaggtcgggatggcatccaaggccccgtgggactcccgggt
ccagcaggtcctgttggcccccccggcgaggatggagacaagggcgagatcggggagcct
ggccagaagggcagcaagggtgacaaaggggagcagggtccaccaggtcctacaggccca
caaggtccgatcggtcagccaggtccagctggtgctgatggagagccgggtcccagaggg
cagcaaggcctctttggtcagaaaggtgatgaaggacctcgaggtttccccggtcccccc
ggccctgtgggcttgcagggcttgcctggacctcctggtgagaagggagaaacaggagat
gttgggcaaatgggtccaccaggtccacctgggcccagaggcccctccggcccaccagga
gcagacggaccccaaggccctgctgggggaataggaaatcctggtgcagtaggagagaag
ggtgagcctggtgaatctggtgagcctggtctgcctggagaggtcggcctgccgggtcca
aaaggtgaaagaggtgaaaagggtgaagcaggtccctctggtgccgctggtccacctggc
cctaaaggtccaccaggtgatgatggtcccaaaggcagccctggtccagttggtttccct
ggtgaccccggtcctcctggagagcctggtccagctggtcaagatggtccccctggtgac
aaaggtgacgacggcgaacctggtcagacagggtccccaggtcccacgggagagccaggc
ccctctggacccccaggaaaaaggggccctcctggtccagctggtcctgaaggaaggcaa
ggagagaaaggagccaagggtgaagctggtttggaagggcctcctgggaagacaggccca
atcggtccccagggtgctccggggaagcccggccctgatggcctccggggaattcctggt
ccagttggtgaacaaggccttccaggatcccctggcccagatggccccccaggcccattg
ggcccacctggtttgcctggcctcaaaggagactctggtcctaaaggagaaaagggtcat
ccaggtttaattggtcttattgggccgccgggtgagcagggagaaaagggtgaccgaggt
ctcccgggcccccagggctctgcaggacccaagggagagcagggtatcacaggtccctct
ggaccaattggacccccagggccaccaggattaccgggtccacctggtcccaaaggtgct
aaaggatcatcaggtccaacgggtccaaagggtgaatcgggtcttcctgggcctccaggg
cctcctggtcctcctggagaagtcatccagcctctgcccatccagtcttccaagaggacc
aggcgaaacatcgacgccagccagctggtggacgatggaaacgctgacaactacatggac
tatgcagatggcatggaggaaatcttcggctcactgaattccttgaaactggaaattgaa
caaatgaagcatccattgggcactcaacataacccagctcgtacctgcaaggatctccag
ctctgtcaccctgatttcccagatggtgaatactgggtggatcctaaccaaggatgttcc
agggactctttcaaagtgtactgtaatttcacagctggtggagagacttgcatcttccct
gataagaagtctgaaggagctagaattacttcttggccaaaggaaaacccaggctcctgg
ttcagtgaattcaagcgcggtaaactgctctcctatgtggattcggatgggaaccccatc
ggagtggtacagatgacgttcctcaggctgctgagtgcctcggcccaccagaacatcact
tacaactgctaccagtccgtagcctggcacgatgccaccactgacagctacgacaaggcc
atccgcttcctgggctccaacgacgaggagatgtcctacgacaacaacccctacatccga
gctgcattcgatggctgcgcggcaaagaagggctatcagaagactgtcctggaaatcaac
acgcccaaggtcgagcaagtgcctatcgtcgacatcatgttcaatgacttcggagaagca
tcacagaaatttggattcgaggtgggaccagcttgcttcatgggctaa
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integrated database retrieval system
