Gallus gallus (chicken): 396292
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Entry
396292 CDS
T01006
Symbol
COL6A2
Name
(RefSeq) collagen alpha-2(VI) chain precursor
KO
K06238
collagen type VI alpha
Organism
gga
Gallus gallus (chicken)
Pathway
gga04510
Focal adhesion
gga04512
ECM-receptor interaction
gga04518
Integrin signaling
gga04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gga00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
396292 (COL6A2)
04518 Integrin signaling
396292 (COL6A2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
396292 (COL6A2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
396292 (COL6A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gga04147
]
396292 (COL6A2)
00536 Glycosaminoglycan binding proteins [BR:
gga00536
]
396292 (COL6A2)
Exosome [BR:
gga04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
396292 (COL6A2)
Glycosaminoglycan binding proteins [BR:
gga00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
396292 (COL6A2)
Hyaluronan
Extracellular matrix or blood plasma proteins
396292 (COL6A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
Motif
Other DBs
NCBI-GeneID:
396292
NCBI-ProteinID:
NP_990679
CGNC:
4597
Ensembl:
ENSGALG00000039216
UniProt:
P15988
LinkDB
All DBs
Position
7:6782416..6808501
Genome browser
AA seq
1022 aa
AA seq
DB search
MSRRTAEMFQQAFLSTLLCVALVPLHAQFDDEPVTSCTEKTDCPISVYFVIDTSESIALQ
TVPIQSLVDQIKQFIPRFIEKLENEVYQNQVSITWMFGGLHYSDVVEIYSPLTRSKDTYL
TKLRAIRYLGRGTFTDCAISNMTQQFQSQTARDVKFAVVITDGHVTGSPCGGMKMQAERA
RDMGIKLFAVAPSEDVYEQGLREIASPPHDLYRSNYTITPKDALHIDENTIERIIKAMKH
EAYAECYKMTCLEIAGPAGPKGYRGQKGAKGNMGEPGSPGLKGRQGDPGIEGPIGYPGPK
GVPGLKGEKGEIGSDGRRGAAGLAGRNGTDGQKGKLGRIGPPGCKGDRGDKGPDGYPGDA
GDQGERGDEGMKGDPGRPGRSGPPGPPGEKGSPGIPGNPGAQGPGGTKGRKGETGPPGPK
GEPGRRGDPGTKGSKGGPGAKGERGDPGPEGPRGLPGEVGNKGARGDQGLPGPRGPTGAV
GEPGNIGSRGDPGDLGPRGDAGPPGPKGDRGRPGFSYPGPRGPQGDKGEKGQPGPKGGRG
ELGPKGTQGTKGEKGEPGDPGPRGEPGTRGPPGEAGPEGTPGPPGDPGLTDCDVMTYVRE
TCGCCDCEKRCGALDIMFVIDSSESIGYTNFTLEKNFVVNVVSRLGSIAKDPKSETGARV
GVVQYSHEGTFEAIKLDDERINSLSSFKEAVKRLEWIAGGTWTPSALQFAYNKLIKESRR
EKAQVFAVVITDGRYDPRDDDKNLGALCGRDVLVNTIGIGDIFDQPEQSETLVSIACNEP
QRVQKMRLFSDLVAEEFIDKMEDMLCPDPQIVCPELPCQTELAVAQCTQRPVDIVFLLDG
SERIGEQNFHRAHHFVEQVAQQLTLARRNDDNMNARIALLQYGSEREQNVVFPLTYNLTE
ISNALAQIKYLDSSSNIGSAIIHAINNIVLSPGNGQRVARRNAELSFVFITDGITGSKNL
EEAINSMKKQDVMPTVVALGSDVDMDVLLKLGLGDRAAIFREKDYESLSQPSFFDRFIRW
IC
NT seq
3069 nt
NT seq
+upstream
nt +downstream
nt
atgtccagaagaactgctgagatgttccaacaggcctttctatccactcttctttgtgtg
gcactagttccactccatgctcagtttgatgatgaacctgttacctcctgtacagaaaag
acggattgccccatcagtgtgtactttgtcattgacacctcagagagtattgctctgcag
actgtgcctattcagagcctcgtggatcaaataaagcagttcatccctcggttcattgaa
aaactggagaatgaggtgtatcagaaccaagtctccatcacttggatgtttggaggactt
cattactcagatgtggtggaaatttacagccctttaacaagaagcaaagacacatacctc
accaagctccgtgctattaggtaccttggccgaggcaccttcacggactgtgctatctcc
aacatgacacagcaattccagagccagacggcccgggatgtgaagtttgcagtggtcatc
actgatggccatgtcactggcagcccctgtggcggaatgaaaatgcaagctgagagggca
cgcgacatggggatcaagctctttgcagtggcccccagtgaggacgtctacgagcagggc
ctgcgggagattgccagcccaccacatgacctgtaccgcagtaactacaccatcacacca
aaagacgccctgcacattgatgagaacactatcgagaggataatcaaagcaatgaaacat
gaagcctatgctgagtgctacaagatgacctgtttggagattgcaggtccagctggtccc
aagggataccgagggcaaaagggtgcaaagggaaacatgggtgaaccaggctcccctgga
ctgaagggacggcagggtgacccaggtattgaaggtccaattggataccctggtcctaag
ggtgttccagggctgaaaggagaaaagggcgagattggatctgatggacggaggggcgca
gctggtttggcaggcaggaatggcaccgatggacagaagggcaagctgggtagaattgga
ccaccaggctgcaagggagatcgcggtgacaagggccctgatggctacccaggagatgca
ggagaccaaggagaaagaggagatgaaggcatgaagggagatcctggccggcctggtcgc
agtggaccccctggacctccaggggaaaaagggagcccgggaattcctggcaaccctgga
gctcaaggacctggtggaaccaaaggaagaaaaggtgaaacaggacctcctggacccaaa
ggagagcctggtcgacgtggagatccagggacgaagggcagcaaaggcggtccaggggcc
aagggagaaagaggagatcctggtccagagggtccccgtggcctgccgggtgaggttgga
aacaaaggagcaaggggagaccaaggattgccaggaccccgaggccctacgggtgctgtg
ggagaaccaggcaatataggatcacgtggggaccctggagacttgggcccaagaggtgat
gctggaccaccgggaccaaagggtgacagaggcaggcctggcttcagctaccctggaccc
agaggaccacagggtgacaagggtgagaaggggcagccaggacccaagggaggaaggggt
gagcttggaccaaaaggaacacaagggacaaaaggagagaagggggaaccgggtgatcct
ggcccaagaggtgaacctggaacccgaggcccacctggtgaagcaggcccagagggtacc
cctggcccacctggagatccaggcctgactgactgcgatgtgatgacctacgtgcgagag
acatgtggatgctgtgactgtgagaagcgctgcggtgccctggatatcatgttcgtcata
gacagctcagaaagtattggttataccaacttcactctggagaaaaatttcgttgtgaac
gtggtcagccggctgggctccatcgccaaggaccccaaatcagagacaggtgcccgtgtt
ggggtggttcagtatagtcacgaggggacctttgaagccatcaagctcgatgatgagcgc
atcaattcactgtcaagcttcaaggaagcagtaaagcgcctggagtggattgctggaggc
acctggacaccttctgctcttcagtttgcttacaataagctcatcaaagaaagccgtcga
gagaaagcccaagtgtttgctgtggtgatcacagatggacgctatgaccctcgggatgat
gacaagaacctaggggctctttgtggcagagatgtgctcgtcaacaccattggcattgga
gacatatttgatcagccagaacagagcgagaccctagtctccattgcctgcaatgaaccc
cagcgagtccagaagatgaggctcttctcagacctcgtggcagaggaattcattgacaag
atggaggacatgctctgcccagatccacagattgtctgccctgagctgccctgtcagaca
gagcttgcagtagcccagtgcacacagcgccccgttgacattgtcttcttgctcgatggc
tctgaaagaattggggagcagaatttccacagggcccaccactttgtggagcaggttgcc
caacagcttacactggccaggagaaacgatgacaacatgaatgcgcggatcgcactgctg
cagtacggcagtgagagagagcagaatgtggtcttcccactgacctacaacctgaccgaa
atctccaatgccctggctcagatcaagtacctggactcatcctccaacattgggtcagcc
atcatacacgccatcaacaacattgtgctcagcccaggaaatggtcagcgagtcgctcgg
cgcaatgctgaactctcctttgtcttcatcactgacggcatcacaggaagcaagaacctt
gaggaggccatcaattccatgaagaagcaagacgtcatgcccacggtggtggctcttggg
agtgacgtagacatggatgtcctgctgaagcttggccttggagatcgggctgccatcttc
cgggagaaggactatgaaagcctctcccagccaagcttcttcgacaggttcattaggtgg
atatgttag
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