Gallus gallus (chicken): 396340
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Entry
396340 CDS
T01006
Symbol
COL3A1
Name
(RefSeq) collagen alpha-1(III) chain precursor
KO
K19720
collagen type III alpha
Organism
gga
Gallus gallus (chicken)
Pathway
gga04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gga00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
396340 (COL3A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
gga00536
]
396340 (COL3A1)
Glycosaminoglycan binding proteins [BR:
gga00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
396340 (COL3A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
396340
NCBI-ProteinID:
NP_990711
CGNC:
49759
Ensembl:
ENSGALG00000035584
UniProt:
A0A1D5PE57
LinkDB
All DBs
Position
7:complement(618383..681637)
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AA seq
1460 aa
AA seq
DB search
MMSFVQKVSLFILAVFQPSVILAQQDALGGCTHLGQEYADRDVWKPEPCQICVCDSGSVL
CDDIICDDQELDCPNPEIPFGECCPVCPQTTPQPTKLPYTQGPKGDPGSPGSPGRTGAPG
PPGQPGSPGAPGPPGICQSCPSISGGSFSPQYDSYDVKAGSVGMGYPPQPISGFPGPPGP
SGPPGPPGHAGPPGSNGYQGPPGEPGQPGPSGPPGPAGMIGPAGPPGKDGEPGRPGRNGD
RGIPGLPGHKGHPGMPGMPGMKGARGFDGKDGAKGDSGAPGPKGEAGQPGANGSPGQPGP
RGPTGERGRPGNPGGPGAHGKDGAPGAAGPPGPPGPPGTAGFPGSPGFKGEAGPPGPAGA
SGSPGERGEPGPQGQAGPPGPQGPPGRAGSPGNKGEMGPSGIPGAPGLPGGRGLPGPPGT
SGNPGAKGTPGEPGKNGAKGDPGPKGERGENGTPGAPGPPGEEGKRGANGEPGQNGVPGT
PGERGSPGFRGLPGSNGLPGEKGPAGERGSPGPPGPSGPAGDRGQDGGPGLPGMRGLPGI
PGSPGSDGKPGPPGNQGEPGRSGPPGPAGPRGQPGVMGFPGPKGNEGAPGKNGERGPGGP
PGTPGPAGKNGDVGLPGPPGPAGPAGDRGEPGPSGSPGLQGLPGGPGPAGENGKPGEPGP
KGDIGGPGFPGPKGENGIPGERGAQGPPGPTGARGGPGPAGSEGAKGPPGPPGAPGGTGL
PGLQGMPGERGASGSPGPKGDKGEPGGKGADGLPGARGERGNVGPIGPPGPAGPPGDKGE
TGPAGAPGPAGSRGGPGERGEQGLPGPAGFPGAPGQNGEPGGKGERGPPGLRGEAGPPGA
AGPQGGPGAPGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGNNGSPGPPGNAGPPGK
DGPPGPPGNTGPPGGSGPPGLRGEPGAPGEKGPPGARGERGTPGDPGPQGIIGSRGSTGL
PGPRGLPGPAGMAGGKGEDGKPGVNGVPGERGAPGPQGPMGQRGLPGEPGRDGNPGSDGS
PGRDGSPGGKGDRGESGPPGVPGPPGHPGPAGNNGAPGKAGERGFQGPPGPPGSAGPAGA
RGPAGPQGPRGDKGETGERGSAGIKGHRGFPGTPGLPGPPGPLGPQGAIGSPGASGARGP
PGPAGPPGKDGRGGYPGPIGPPGPRGNRGESGPAGPPGQPGLPGPSGPPGPCCGGGVASL
GAGEKGPVGYGYEYRDEPKENEINLGEIMSSMKSINNQIENILSPDGSRKNPARNCRDLK
FCHPELKSGEYWIDPNQGCKMDAIKVYCNMETGETCLSANPATVPRKNWWTTESSGKKHV
WFGESMKGGFQFSYGDPDLPEDVSEVQLAFLRILSSRASQNITYHCKNSIAYMDQASGNV
KKALKLMSSVETEIKAEGNSKYMYAVLEDGCTKHTGEWGKTVFEYRTRKTMRLPVVDIAP
IDIGGPDQEFGVDVGPVCFL
NT seq
4383 nt
NT seq
+upstream
nt +downstream
nt
atgatgagctttgtgcaaaaagtaagtttgttcattcttgccgtgtttcaaccctcagtt
attttggcacaacaggacgccctaggaggatgtacccatcttgggcaggaatatgctgac
agggatgtttggaaaccagagccatgccaaatctgtgtgtgtgactctggatctgttctc
tgtgatgacatcatctgtgatgaccaggagttagactgtcccaacccagagatccccttc
ggagaatgctgtccagtttgcccgcagacaacaccacagcctacaaaacttccatatacg
caaggccccaagggagacccaggctcccctggttctccgggcagaactggtgcacctggg
cccccaggacagccagggagccccggagctcccggtccacctggtatctgccagtcatgt
cccagcatcagtggaggtagtttctctccacagtatgactcctatgatgtgaaggctggc
tcagttggcatgggttatcctccccagcccattagtggctttccgggaccccctggcccc
agtggcccacctggtccacctggtcatgcaggtcccccgggctctaacggataccaaggc
ccccctggagaaccaggacaacctggcccttctggtcctccaggccctgctggaatgata
ggcccagctggcccaccaggaaaagatggagaaccaggaagaccaggaaggaatggagac
cgtggaatccctggattaccgggtcacaagggacaccctggaatgcctggaatgcctgga
atgaaaggtgcacgaggttttgatggaaaagatggtgccaaaggtgacagtggtgctcct
ggtccaaagggtgaagctggtcaacctggagcaaatggatcaccaggccaaccgggacca
agaggtccaactggtgaaagaggaagacctggaaatcctggtggccctggtgcccatggc
aaagatggagctcctggagcggcaggcccacctggtcctccaggtccccctggaactgca
ggatttccgggctctccaggttttaagggtgaagctggtcctcctggccctgctggtgct
agtggcagtcctggtgagagaggagaacctggtcctcagggtcaagctgggccccctggg
cctcagggtcctcctggaagagctggaagccccggcaacaagggtgaaatgggaccttct
gggattcctggtgctcctggtcttccaggaggccgtggtcttcctggtcctcctggtaca
agtggaaaccctggagcaaaaggcactcctggagaacctggtaagaatggtgcaaaagga
gatccaggcccaaaaggcgagcgtggtgaaaatggcaccccaggtgctcctggacctccc
ggtgaggaaggcaagagaggtgcaaacggtgaacctggccagaatggcgtccctgggaca
cctggagagaggggctctcctggtttccgtggcttacccggtagcaacggacttccaggt
gaaaagggtcctgcaggtgagcgtggcagcccaggtccccctggcccaagtggacctgcg
ggagaccgtggtcaagatggaggcccaggtcttccaggaatgaggggtttgcctgggatt
ccaggaagtcctggaagtgatgggaagcctggccccccaggtaatcagggtgaacctggc
cgttctggtccacctggcccagcaggcccacgtggtcagccaggtgtaatgggttttcct
ggtccaaaaggaaatgagggtgcaccaggtaagaatggagaaagaggccctggtggacca
cctggaactcctggtcctgctgggaagaatggtgatgttggcctccccggtcctcctgga
cctgctggtcctgctggggacagaggagaaccaggaccatcaggttcacctggcctacag
ggtttgcctgggggacccggaccagctggagaaaatgggaagcctggagagcctgggcca
aaaggtgatattggaggacccggattcccaggccctaagggtgaaaatggcatcccaggt
gaacgtggtgcacaaggtcctccaggacctactggagcaagaggtgggccaggtcctgct
ggctccgaaggtgccaagggtcctcctggtccccctggtgcccctggaggcacagggctg
cctggtttacagggaatgccaggagaaagaggagcttctgggagtcctggacccaaaggg
gataagggagaacctggtggtaaaggtgctgatggccttcctggtgcaagaggagagcga
ggtaacgtaggtcccattggtcctcctggtcctgctggcccacctggagataagggagag
actggaccagctggtgccccaggtcctgcaggttcccgtggtggtccgggagagcgagga
gaacaaggtcttcctgggcctgctggcttccctggagctccaggccagaatggtgaacct
ggtgggaaaggagagcgaggcccacctggtctgaggggagaggctgggccccctggagct
gcaggtccacagggtggtcctggtgcaccaggtccgcctggtccccaaggagtaaaagga
gaacgtggatctcctggaggccctggtgctgctggtttccctggtgctcgtggtctaccc
ggtccccctggtaataatggtagtccaggtccccctggtaatgcagggcctccaggcaag
gatgggcctcctggaccccctggtaacactggtcctcctggtggctctggacctcctgga
ctacgtggtgagcctggagcaccaggtgaaaaagggcctccaggtgcacgaggagagagg
ggaacaccaggtgacccaggaccccaaggcatcattggtagccgtggcagtacaggttta
ccaggtccacgtggcctccctggcccagctggcatggcaggtggcaagggtgaagatggt
aaaccaggtgtcaatggtgtcccaggagaacgtggtgctcctggtccacaaggtcccatg
ggtcagagaggcttacctggagagcctggcagagatggtaaccctggctcagatggctct
cctggacgggatggatccccaggcggcaaaggtgaccgtggtgaaagcggccctcctggt
gttccaggacctcctggtcacccagggcctgcaggtaacaatggtgcccctggaaaagct
ggtgaaagaggatttcagggtccacctggacctcctggctctgccggtcctgctggagct
cgtggacctgctggtcctcaaggtcctcgtggtgataaaggtgaaactggtgaacgaggc
agcgctggcatcaagggtcatagaggatttcctggtacgccaggtctccctggtcctcct
ggtcccctaggtcctcaaggtgcaattggaagtccaggagcttcaggagcaaggggtcca
ccaggaccagctgggccccctggaaaagatggtagaggtggctatccaggtccaattggt
cctcctggcccgcggggtaacagaggtgaaagtggccctgcaggtccaccaggccagcct
ggtctacctggcccttctggtccgcctggtccatgttgtggtggtggcgtagcttccctg
ggtgctggagaaaaaggtccagtgggctatggatatgaatatcgagatgagccaaaagaa
aatgagatcaacctgggtgaaatcatgtcttcaatgaagtcaattaacaaccagattgaa
aatatccttagtcctgatggatcacgaaagaatccagctcgcaactgcagagatctgaaa
ttctgccatcctgagctcaagagtggagagtactggattgatcctaaccaaggctgcaag
atggatgcaattaaagtgtactgtaatatggaaactggtgagacatgcctcagtgctaac
cctgccactgtgccaaggaaaaactggtggactactgaaagtagtggaaagaaacatgta
tggtttggagagtctatgaagggtggtttccagtttagctatggagatcctgacctccct
gaggatgtctctgaagttcagctggcattcctccgcatcctctccagccgtgcctcccag
aacatcacctaccactgcaagaacagcattgcctacatggatcaagccagtgggaacgtt
aaaaaagccctgaagctgatgagctctgtggaaactgagatcaaggctgaaggaaacagc
aaatacatgtatgcagttctggaagatggctgtactaaacacactggtgaatggggtaaa
acagtctttgaatacagaacgcgcaaaacaatgaggttacctgtggttgatattgcaccc
atagatattggtggtcccgatcaggaatttggtgtggacgttggcccggtctgcttctta
taa
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