Gallus gallus (chicken): 415572 Help Entry 415572            CDS       T01006                                  Symbol SPG11 Name (RefSeq) spatacsin isoform X1   KO K19026   spatacsin Organism gga  Gallus gallus (chicken) Pathway gga04142   Lysosome Brite KEGG Orthology (KO) [BR:gga00001]  09140 Cellular Processes   09141 Transport and catabolism    04142 Lysosome     415572 (SPG11)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:gga03400]     415572 (SPG11) DNA repair and recombination proteins [BR:gga03400]  Eukaryotic type   DSBR (double strand breaks repair)    HR (homologous recombination)     Other HR factors      415572 (SPG11) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Spatacsin_C Motif Other DBs NCBI-GeneID:  415572 NCBI-ProteinID:  XP_003641879 CGNC:  50019 Ensembl:  ENSGALG00000008180 UniProt:  A0A8V0Z1S5 LinkDB All DBs Position 10:19759363..19785913 Genome browser AA seq 2425 aa AA seqDB search MAGARRELRVLLAARPGQARDSVRDAARVRLSAEQDALGSLLLRDGIYLESLGPGGGGRA RSGVLPGAWADFVWERTAEYDPQAKRTKILALSESHDLFVYEFTREDGKCGPDPLHSCRE GVLKKLLEANSVSLSSILSLRILSFKDNKCTLLLNSFIVMHLTFPGEHSSLETCDCFTLD LPPPVLERVTDINFCRGILFFLDSSGWIYVFDSSDGANLAHINVSLCQGGVQDGDRSPTI TSPLTALKVSYDLSVAVIISSSSNACSVDLNVYFRQFPGHLICRRDSESLSLKPPEGVDE DDLASSDYSMELLSSPFRTDRSWKAHLSSLCSTIRKRRSRSPHLLCDMNLPWYQYFTHLE DHDPLIYETSEKALAIAPKAFPPVLSNPSQSAGTKLSDMGQQWKQILPVQLSQEVVKLEC KSVTGAKALFVILTDDKALTLALWDFESQDVAHYQFGKNSVYVDCNEEVPLCLLLTECGL SLILFGLTQEEFLNRLMIYGSAGVVDSVCHLNGWGRCSIPVHALEAGLENRQLDTVDLFL KSKESLFNLSALRSEAQQSADGASCSFLKNLQELRPALNLLCSAIRENDMEPQSKHFSEQ LLNLTLTFLSKQLEEIFVHTEEPDRYLQKAAEILTDYIIELRTFMKNYPRSQVNTTNVGS DSDEDLPAIEESQMWEKLTPEEVIAEAILSNKMPEAQIFFRMHRHPAQSLQELIRTGLDL VYGHLLKGNTREASALLKNMGFDVKQQLHKICFYTADKHVRDLLVKVLQEENYFSEKEKK MIDFVHQVESLYSESFQENKEMQSLSSVRNWRQEQDSSKHLATLESLMDHDGRRVPSREV RVMLNWAQCWDELLQDMILLPRKQGQGLATCNPEALWMYLTAQHDWLNISSWIEEFEPNH SLCGQSKWPPLAASIIDQHTLCSGYMRNEILNKLARNGIFVLSELEDFELLLQRLVSLGG VLQNPHPVPKYSAASGLDFHARFILHCLEHNLQYMLYTYLDYYSLTPSNCPILDDKELHE AHPWFEFLVQCRGVASNPRDPKMIFQASLANAQILIPSNQASVSSMLLEGRTLLALATTM YAPGGIDQVLQNEDTEKPLKKVDPQLLKMALSPYPKLRAALFPPCTSHGILPPDISLYHL VQSLVPFDPSKLFGWQSTNTLAVSDASSDLPHFSSPELVNKYAVMERLDFLYYLRHGRPS FAFGTFLVQQLVKSKSPKQLIQQAGNEAYLLGLSFFNTPSVAAACVCFLELLGLSSLKLR VDIKVANMIFIYKTRNEETQHNQIRESLVEQLMRLADGEKAATEEVLKSLEEAFWDSIEH QGIKRTSSDSRQQWSLVMQFCKLHAMKLSTSYLKECAKSNDWLQFIIQAQLYSYKPDEVS SVLEGFAPIIQHHLMLALEKSPFLHAAAGAPEGSTGSRCADSLFQILFRCQESPNASCHL LAEGLREHAPILSVLAACSPDADIIHCLCVWIITSVDDVTRSEATKHIQSSVENHKWDLH DLSLIWKVLLRKQKCQTLIRGFQLFLKDSPLLHILEMYDLCMNCKRYYEAKTKLDEFQKH LINLKTTDGAAASGVPVQWLESQALFLLELMMQQCRTEYELGKLLQLFAATDNLLLDGPY VKKLCALSETLRDSSVPINRSMLTRYTPETFQKECTSILEQLQEKGMFSLAREVAELAEL PADSVVTQEILRDIRLLRDTGEWDRDQIRIKFWKKCNDSFVKNSISSKAASDFFLNQGNV VSESPVREKINSISERHLLLTLAGHWLAKDVSVALDKLEEIEKQIWICRITQQMLSTDEG PGKSGRSSCAAANGDFTFDNLAKEFSFSKLPALNTPNYLNVEGLELRGCQQTLAAEEEES LRFLVGCLLDEGSVHEASRVCRYFHFYSRDVSLVLHCRALAAGEADLDRLHADIQALVAI EKTQDSSASQQSRVPSTSSLEDWTHIADPSPDDQIVVSLKALTDECVHGRNYCRQVLCLY ELSKELNCSYSEMSALDPEKVLRAILSSQQAERCRRAQAFITTQGLQPETVAELVAKEVV QELLASSEGKGQKQVSNPAAESQAFLQLAKLCQDHTLVGMKLLEKISSVPRGELSCITEL LILAHNCFSLTCHMEGITRVLQAARLLTDEHLAPNDEYGLMVRLLTGIGRYNEMTYIFEL LHEKHYFEVLMRKKLDPSGTLKTALLDYIKRCRPGDSEKHNMIALCFSMCREIGENHEAA ACIQLKLIESQPWEESLQDVANLKKLLMKALTLFIDAAESYSKDSCVRQALRCRRLTKLI TLQLHFLSTGQSTMLINRNRQNLMECIVSLPRFYQAAVVAEAYEFVPDWAEVLYQQVIAK GDFSYLEEFKQQRLLKPAMFEEIAKKCKQHPPSDAALRNLKKLLAYCEDISTYYRLAYDN KFYDVVNMLLKDAQTGCCLNDMLSS NT seq 7278 nt NT seq  +upstreamnt  +downstreamnt atggcgggggcgaggcgggagctgcgcgtgctgctggcggcccgcccgggtcaggcgcgg gactccgtgcgggacgcggcgcgggtccggctgagcgcggagcaggacgcgctgggcagc ctgctgctccgtgacgggatctacctggagtccctggggccgggcggaggcggccgggcg cggagcggcgtcctgccgggagcgtgggctgacttcgtgtgggagagaacagcagagtat gatccgcaagcaaagaggacaaaaatactggctctcagtgaaagtcacgacctgtttgtc tatgaattcaccagagaagacggaaaatgcggcccggatcccctgcacagctgcagggag ggtgtgctgaaaaagctcctggaggccaacagcgtcagtctgtcttcaattttgtctctg aggatactgtcttttaaagacaacaaatgcacgcttctgctcaacagctttattgttatg catctcacctttcctggagagcattcatcattggagacgtgtgactgctttacccttgat ttgcctccaccagtgttggaaagagtaacagatataaacttctgcagggggattctgttt ttcttggatagttctggctggatctacgtatttgattcttctgatggtgcaaatctagca cacatcaacgtgtcactctgccaggggggtgtgcaggatggggacaggagtcccaccatc acatcaccgctcactgcactcaaagtgtcatatgatctcagcgttgctgtgatcatcagt tcttccagcaatgcctgttctgtggatctaaacgtgtacttcagacagttccctggacat ctgatttgtagaagagattctgaaagcctttcactgaagccacctgagggagttgatgag gatgaccttgctagttctgactacagtatggagctgctgtcctcgcctttccgcacagac aggtcatggaaggcacacttatcctccctgtgcagcacaataaggaaaagaagatcacgt tccccacatttgctatgtgatatgaacttaccttggtatcagtattttacccaccttgaa gatcacgatcccttgatctatgaaacctctgagaaggcactggccattgctccaaaggct tttccacctgtcctttccaacccatcgcagagtgctggcacaaagctcagtgatatgggg cagcagtggaaacaaatcctccccgtacagttatcacaagaagtggtgaaactggagtgt aaatctgtgactggagccaaagcactgtttgtgatcctaacagatgacaaggctttgaca cttgctctctgggatttcgagtcccaagatgtagcacattaccagtttggcaaaaacagc gtttatgtggattgtaatgaggaggtgccattatgcctgctgctgacagagtgtggcctc tccttaattcttttcggtttaactcaagaggagtttttgaatagactgatgatctatggc agcgctggagtcgtagattctgtatgtcacctcaatggatggggacggtgttcgattcca gtacatgcattggaggctggcttggaaaatcgtcagctagacacagtggacttattttta aaaagcaaagaaagtcttttcaatctctctgcgctgcgctccgaagcccagcagtctgca gatggtgcgtcctgctcttttctgaaaaatttgcaagagctgagaccagctttaaacttg ctttgctcagcaatcagagagaacgacatggagccacagagcaaacacttctcagagcag ctgctgaacctcacgctgactttccttagcaagcagcttgaagaaatttttgtccacaca gaggaacctgatagatacctgcagaaggctgcagagattttaactgattacatcattgaa cttaggacgtttatgaaaaactatcctcgatcacaagtaaataccacaaatgtagggagt gattctgatgaagacctgcctgcaatagaggaaagccagatgtgggaaaaactgacacct gaggaagtcattgctgaagccatcttaagcaacaaaatgccagaggcccagatcttcttc cgaatgcaccggcatcctgctcagagccttcaggaactcattcggacaggtttggatctg gtctatggccatcttctgaagggcaataccagagaggcctcagcacttctgaagaacatg ggttttgatgtgaagcagcagttgcataagatatgtttctacacggctgataaacacgta cgagatttgctggtcaaagttttacaagaagaaaattatttttctgaaaaagagaagaaa atgatagactttgtgcatcaggttgaaagcttgtactcggagtccttccaagaaaataaa gagatgcaatctctttccagtgtaaggaactggagacaggaacaagactcttccaaacat ttggccactctggagtcattgatggatcatgatggacgccgggtgcccagcagggaggtc agggtgatgctgaactgggctcagtgctgggatgagctccttcaggatatgattcttctc cccagaaaacaaggccaaggacttgccacatgtaaccctgaggctctttggatgtacctg acagcccagcatgattggcttaatatcagttcatggattgaagaatttgagcccaaccac agcttatgtggacaaagtaaatggccacccctggctgcaagcattattgaccaacacacg ttgtgtagtggctacatgagaaatgaaatattgaacaagctggccagaaatgggattttt gtcctttctgaattggaagactttgaacttctgctccaaagattggtttccctcggagga gtactgcaaaatcctcaccctgttccaaagtacagtgctgcaagtggtttggacttccat gctcgttttatccttcactgcttagaacacaatttgcagtatatgttatacacataccta gattactacagtttaactccttccaactgccctattttggatgacaaggaactgcatgaa gcacatccctggtttgaattcctcgtgcagtgccggggggttgccagtaacccacgagat ccaaagatgatttttcaggcgagtctagcaaatgctcagatcttgattcctagtaatcaa gccagcgtgagtagcatgctgctggagggacgtacactgttagcacttgctaccaccatg tatgcacctggaggcattgatcaggttcttcagaatgaagatacagagaaaccactaaag aaagttgatcctcagctcttaaaaatggcattgagtccttaccccaaactcagagctgct ctttttcccccgtgcacctcccatggaattttgccacctgacatttccctttatcatctt gttcagtcattagtgccatttgatcccagtaagttatttggctggcagtcgacaaatacc cttgctgtatcagatgcatcaagtgaccttcctcatttctcatcccctgaactggtgaac aaatatgctgtaatggaacgactggactttttgtactacctgcgccatggacgcccctcg tttgcctttggtacatttttggtccagcagttggtcaagagcaaaagccccaaacagttg attcagcaagcaggaaatgaagcctatcttctaggcctttctttcttcaatacgccttca gtagcagctgcctgtgtgtgctttctggagctgcttgggctcagcagcctcaaactgaga gttgatattaaggttgcaaacatgatattcatttacaaaaccagaaatgaagaaactcag cacaatcaaataagggaatctctggttgaacagctaatgaggttggctgatggtgaaaaa gcagcaacagaagaagttcttaaatccttagaagaagccttttgggattcaattgagcat caaggaataaagaggacatccagtgactccagacagcagtggtctttggtgatgcagttc tgcaaactccatgccatgaaactgagcacctcatacctaaaggagtgtgctaaatccaat gactggctgcagttcatcatccaagcccagctgtacagctacaagccagatgaggtctca tctgtccttgaaggcttcgctcccattatacagcatcacctgatgttggcactggagaag tcaccgtttctgcacgctgctgcgggggctcctgagggcagcactgggagcagatgtgca gacagtctcttccaaatcctgttccggtgtcaggagagccccaatgcttcgtgtcacctt ttggctgaaggactgagagaacacgctcccattctgagtgttttagcagcgtgttcccct gatgctgacattattcactgtctctgtgtctggataattaccagtgtggatgatgttacc agatctgaagcgacaaaacatattcagagctcagtagaaaatcacaagtgggatcttcat gacctgtcgcttatctggaaagtgcttttaagaaagcaaaaatgtcaaacacttataagg ggattccagctcttcttaaaggattcccctttactgcatatactggagatgtacgatctg tgcatgaactgtaaaaggtactatgaagccaaaaccaaactggacgagtttcagaaacac ctcataaatctgaagaccaccgatggagcggcagcttcaggagtccctgtgcaatggttg gagtcacaggccttgtttcttcttgaactgatgatgcagcagtgtaggacagaatacgaa ttgggaaagctcttacagctgtttgctgcaacagacaaccttctccttgatggcccttat gtgaagaaactgtgtgcgctcagtgagaccctgagggattcctccgtgcccattaatcgc tccatgctgaccaggtacaccccagaaacgtttcagaaggagtgcacatcgattctggag cagctccaggagaaaggaatgttctctctggctcgggaggtggcagagctggctgaactg cctgcagacagcgtggttacccaagagattctgagggatatacgtctgttaagagacaca ggagagtgggatcgagatcagataagaattaagttctggaaaaagtgtaacgacagcttc gtgaaaaattccatctccagcaaagctgcatcggatttctttttgaatcagggcaatgtg gtgtctgaatccccagttcgtgagaagataaacagcatttcggagagacatctgctgctt accctggctggccattggctcgccaaggatgtctcggtggcattggacaaattggaggaa atagagaaacagatctggatttgtcgcatcacacaacaaatgttatccacagatgagggg ccaggcaagtcgggacgctcctcctgtgctgcagcgaatggggattttacttttgataac ttggccaaggagttttctttttcaaagctgcctgctctgaacacaccaaactacttaaat gtggagggtcttgaattgagggggtgtcagcagaccttggctgcggaggaggaggagtcg ctcaggtttctggtcggatgccttctcgatgaaggaagcgtgcacgaggccagccgcgtt tgtcgctatttccatttctacagcagagacgtttcactggtgttgcactgcagagccctg gccgcaggggaggctgacctggacagactgcacgcagatattcaggctcttgtagcaata gagaagacacaggacagcagtgcatcgcagcagagcagagtcccgagcacatcgagctta gaggactggacacacattgcagatccatcgccggatgatcagattgtcgtcagtctgaag gccctcacagatgaatgtgtccatgggagaaactactgcagacaggttctgtgtctgtat gaactttctaaggaactgaactgctcctacagtgagatgtcagcccttgaccctgagaaa gtgcttcgagcaattctgtcatcccagcaggcagagcgctgcaggagggctcaggcgttc atcaccacgcagggcctgcagcccgaaactgtggcagagctggtggccaaagaggtcgtg caggagttactggcctcttcagaaggaaaaggacagaagcaggtttccaaccctgcagct gagagccaggcgttcctgcagctcgcaaagctgtgccaggaccacacgctggtgggcatg aagctgctggagaaaatttcctctgtgccacgtggagaactgtcatgcattacagaactg ctgattctggcccataattgctttagtctgacttgccacatggaaggaatcaccagagtc ctgcaggcagcacggctgctcacagatgagcatttggcacctaatgatgagtatggactt atggttcgtcttctcactgggatcggcagatacaatgagatgacctacatctttgagctg ctgcacgagaagcattactttgaagtgctcatgaggaagaagttggacccgagtgggaca ctgaagacagctctgctggattacatcaagcgctgccgcccaggggacagtgagaagcac aacatgattgccctttgcttcagcatgtgccgggaaattggagagaatcacgaggctgct gcttgcatacagctgaaactcattgaatctcagccatgggaggagtcccttcaggatgtt gcaaacttaaagaaactgctgatgaaagctctgaccctcttcattgatgcagcagaaagt tactctaaggactcctgtgtccgccaggcgctgcgctgccgccgcctcacaaagctgatc actctgcagctgcattttctgagcaccggtcagagcacgatgctgattaacaggaacagg cagaacctcatggaatgcatcgtgtccctgcctcgattctatcaggcggcggttgtggcc gaggcgtatgagtttgttccagattgggctgaagttctgtaccaacaagtgatcgctaag ggagacttcagctacttagaagaatttaaacagcagagactgctgaagcctgccatgttt gaggagattgcgaagaagtgtaagcagcacccacccagcgatgctgctctgaggaatctg aagaagctgctcgcttactgcgaggacatctccacgtactacaggctggcatatgataac aagttctatgatgtggtcaatatgctcctgaaggacgcgcagactggatgctgccttaat gatatgttatccagctag

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