Gallus gallus (chicken): 415602
Help
Entry
415602 CDS
T01006
Symbol
YTHDC2
Name
(RefSeq) probable ATP-dependent RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
gga
Gallus gallus (chicken)
Brite
KEGG Orthology (KO) [BR:
gga00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gga03041
]
415602 (YTHDC2)
Enzymes [BR:
gga01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
415602 (YTHDC2)
Spliceosome [BR:
gga03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
415602 (YTHDC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
OB_NTP_bind
Helicase_C
R3H
HA2_C
DEAD
HA2_N
Ank_2
AAA_19
nSTAND3
AAA_22
Ank
ATPase
Ank_4
AAA_7
AAA_16
PhoH
AAA_23
AAA_29
ABC_tran
Sigma54_activat
Motif
Other DBs
NCBI-GeneID:
415602
NCBI-ProteinID:
XP_004949328
CGNC:
106
LinkDB
All DBs
Position
Z:complement(45785714..45824755)
Genome browser
AA seq
1446 aa
AA seq
DB search
MSSPSSSSPQQHDGAAGNASASTSSRSAASPSAASSSASGRGRGKALADARVSEELEIAL
NLALERFWYSDDQEMSFPSSFTSTERAFIHRLCQSLGLISKSKGKGSSRYLTVRKKNGSE
VAHAEMTCCLTPRTKQTVHSLIHRFPLTNKERIELLPKTQRGNAFAVETENKEVGKTSGR
LSSGIPQVPLKRGESEYDSFRQSLPVFEKKEEIVKIIKENKVVLIVGETGSGKTTQIPQF
LLDDCYENGVPCRIFCTQPRRLAVIAVAERVAAERREKVGQTVGYQIRLESRVSPRTLLT
FCTNGILLRTLMAGDSALSTVTHVIVDEVHERDRFSDFLLIKLRDILQNQTNLKLIISSA
ALDANLFIKYFGSCPVIHIQGRPFEVKEMFLEDILRSTGYTNKEMIKYKKEKQREEKQQS
TLTEWCCAQENSSNPESRRRRSVASVSEEYNLLDSSGDTVFNHLIERDTSCLEPWLIKEM
DSCLSDIWLHKDIDSFAQVFHFILTENVSVDYRHSETSATALMIASGRGFLSQVEQLISM
GASVHCKSSNGWMALDWAKHFGQTEVVDLLESYSASMESGNLDESSLVQASGNDLGAEDR
ELLKAYHHSFDDEKVDLDLIMHLLYNICNSSDGGAILIFLPGYDEIISLRDRIIFDDKRF
VDNAHRYQVFMLHSNMQTLDQKNVLKTPPSGIRKIILSTNIAETSITVNDVVFVIDSGKM
KEKSFDALSCVTMLKTVWISKASAIQRRGRAGRCRPGVCFHLFSRLRFQNMLEFQTPELR
RMPLQELCLHTKLLAPVNCPVVDFLMKAPDPPPALIVRNAIQMLKKIDAMDVWEDLTELG
YHLAELPVEPHLGKMVLCAVVLKCLDPILTIACTLAYRDPFVLPTVASQKRAAMLCRKRL
AAGTFSDHMVLLRAFQAWQKARSDGWERVFCEKNFLSQATMEIIIGMRTQLLGQLRALGF
VRARGGADIRDVNVNSENWAVVKAALVAGMYPNLVHVDRENLVLTGPKEKKVRFHPTSVL
SQAQYKKIPPSNGQAAAVQALPTDWLIYDEMTRAHRIANIRCCSVVTPVTVALFSGPARL
PRNALQEPLSFRGNRVSNDNDSDSGMEDERSNVALLKLDEWLHFKLDSEVAGLLMQLKLK
WHSLLLRRMRAPSKPWSQADEITIRAIISVLSTEEQFAGLLQPSGVGQRPRPVSYNELPS
APTWRSSSSSAETELSDDSSNAEKVLRKSAPPAFHQPRRHKEKNVVASKRTSDEKSDQSS
VKSTDSSCYPSPCVSPSPVSGKGSKTPSPRLSMPVRYFIMKSSNLQNLDISQQKGIWSTT
PSNEQKLNRAFWESSLVYLIFSVQGSGHFQGFARMSSEIGCEQSQCWGSTGLGGVFKVEW
IRKESIPFQFTHHLLNPWNDNKEVQISRDGQPWLSNITVNQQCAYNIKMRKKMVQQALKV
LVMLCS
NT seq
4341 nt
NT seq
+upstream
nt +downstream
nt
atgtcctctcctagcagctcttccccgcagcagcacgacggggccgcagggaacgcctct
gcctccacgtcttcccgctccgctgcttccccctccgccgcttcctcctccgcctcgggc
cgcggccgcggcaaggctttggcggatgcccgcgtctccgaggaattggagatcgcgttg
aacctggcgctggagcggttctggtacagtgatgatcaagagatgtcgtttccttcgtct
tttacctctaccgaaagagcctttattcaccgactgtgtcagtctcttggtttgatatct
aaaagtaaaggaaaaggatcaagtcgatatctaactgtcaggaaaaagaatggatcagaa
gtagctcatgcagaaatgacttgctgtttaacacccagaacgaaacagactgttcacagt
ttaattcacagatttcctctcacaaataaagaacgaatagaacttctgccaaagacgcag
cgaggaaatgcatttgctgttgaaactgaaaacaaagaagttgggaagacgagtggaagg
cttagcagtggtattcctcaagtcccgctgaaaaggggagagtcagaatatgattctttt
aggcaatcattgccagtttttgaaaagaaggaggaaattgtcaaaataataaaggaaaat
aaggttgtactcattgtaggagagactggatccggaaaaactactcaaattcctcagttc
cttcttgatgactgctacgaaaatggagttccctgtcgtatattttgcactcagccaaga
cgtttggcagttattgctgtagctgaaagagtggcagcagaaagaagagaaaaggttggc
cagacagttggttatcagatccgattagaaagcagggtttctccaaggacactgttaacg
ttttgcactaatggcatactgcttcgcacactaatggctggagacagtgctctatcaaca
gtaacgcatgtgattgtggatgaagtacatgaaagggatagattcagtgatttcttgtta
ataaaactgcgagatatattgcaaaaccagactaatttaaaactaatcatttctagtgct
gctctagatgcaaatctctttataaagtattttggaagttgcccagtaatacacatccaa
ggaagaccatttgaagttaaagagatgtttttggaagacattttacgaagtactggatat
acaaacaaagagatgataaagtacaaaaaggagaaacagcgagaagaaaaacagcaaagc
actctcactgagtggtgttgtgctcaagaaaatagtagcaacccagaatcacggagaaga
cgatctgttgcaagtgtatctgaagagtataatctgctggatagcagtggtgacacagta
tttaatcatctgatcgaaagagatacaagttgtcttgaaccatggctaataaaagaaatg
gattcttgtctttccgacatctggttacataaagatattgattcctttgctcaggtgttc
catttcatcttaactgaaaacgttagtgttgattataggcacagtgaaacgagtgcgact
gcactaatgattgcttcagggagaggctttctaagtcaagtagagcaactgattagtatg
ggagcaagtgtccactgcaaatcatccaatggctggatggctttagactgggctaagcac
ttcggacaaacagaggtggttgacctgttggaatcttacagtgcttcaatggaatctgga
aatctggatgagagttctctggtccaagcaagtggtaatgaccttggagcagaggacagg
gaactgttgaaagcctatcatcacagttttgatgatgaaaaggtggatctggacctgatt
atgcacttactttacaacatctgcaatagttctgatgggggagcaattttaatatttctc
cctggatatgatgagataatcagcttgagagaccgtattatttttgatgacaagagattt
gttgataatgctcacagataccaagtattcatgcttcattcaaatatgcagactttggat
cagaagaatgtgcttaaaactccaccttctggcatccgcaaaataattctttctaccaat
attgcggaaaccagtatcacagtcaatgatgttgtatttgttattgattcgggaaagatg
aaagagaagtcctttgatgcactgagttgtgttactatgttaaaaactgtgtggatttca
aaagccagtgctatccagagaagagggagagcagggcgctgtcggcctggagtctgtttc
catctcttcagcaggctccgatttcagaatatgttggaatttcagactccggaacttcga
agaatgccacttcaggaactttgtttacacacaaaacttctggctccagttaattgccca
gttgttgactttctcatgaaagctcctgatcctccaccagctttaattgtgagaaacgcc
atacaaatgctcaagaaaatagatgccatggatgtttgggaagacctcactgaacttggt
tatcatcttgctgaattaccagtagagccacatcttggtaaaatggtgctatgtgctgtt
gttctgaagtgcctggatcctattctcactattgcttgcactcttgcatatcgagaccct
tttgttctacctacggtggcctctcaaaagcgtgcagctatgctgtgcagaaaacgttta
gctgcaggaacatttagtgaccatatggtgctcctcagggctttccaggcatggcagaag
gcacgaagtgatggctgggagagggtcttctgtgaaaagaactttctttctcaagctaca
atggaaatcatcataggaatgagaacacagttacttggtcagcttagagctttaggtttt
gtgagagccagaggaggtgctgatattagagatgttaacgttaactctgagaactgggct
gttgttaaagctgccttagtggctgggatgtatcccaatctagtgcatgtggacagagaa
aacctggttttgacaggaccaaaagagaagaaagtgcgatttcatcctacgtctgttctt
agccaggctcagtataaaaagattccgccatcaaatgggcaagctgcagctgttcaggca
ctccctactgactggcttatatatgatgaaatgacaagagctcacaggatagcaaatatc
agatgttgttcagttgtaacacctgtcactgtggcactcttctctggaccagctaggtta
ccacgtaatgctttgcaagagcctttgtcctttcgaggaaatagggtatctaatgataat
gacagtgatagtgggatggaggatgaaagatctaatgtggcactactgaagctagatgaa
tggctccatttcaaactggactctgaagttgctggtttgctgatgcaactcaaactcaag
tggcatagcttgcttttgcgccgtatgcgagctccttctaaaccatggtctcaagctgat
gaaataactataagagcaattatatccgttttaagtactgaagaacagtttgcaggtttg
ctgcagccttcaggagttggtcagaggccaagacctgtttcttacaatgaacttccttca
gcacctacctggaggtcaagcagcagctcagcagaaactgaattatcagatgattcctct
aatgctgaaaaagttctaaggaagtctgcacctccagcatttcatcagccaaggagacac
aaagaaaaaaatgttgtggcttccaaacgaacatcagatgagaagtcagatcagtcatca
gtgaaatctacagacagcagttgctatcctagcccatgtgttagtccttctccagtgtct
ggaaagggttcaaaaactccttcaccaagactaagtatgccagttcggtactttataatg
aaaagcagcaatctgcaaaaccttgatatttctcagcagaaaggcatatggtctactacg
ccaagtaacgaacaaaaactaaacagagctttttgggagagcagcttggtttacttaata
ttttctgttcaaggatctggacactttcagggatttgctagaatgtcttcagagataggg
tgtgagcaaagtcagtgctggggatctactggtttaggaggtgtgtttaaggtggaatgg
atccgaaaagaaagcattcctttccagtttacacaccatttgctcaacccctggaatgac
aataaggaagtacagataagcagagatggccagccctggttatcaaacattactgtgaac
cagcaatgtgcctacaatataaagatgagaaagaagatggtgcaacaagctctgaaagtg
ttagtgatgctgtgcagctag
DBGET
integrated database retrieval system
