Gallus gallus (chicken): 416572
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Entry
416572 CDS
T01006
Symbol
PALB2
Name
(RefSeq) partner and localizer of BRCA2 isoform X1
KO
K10897
partner and localizer of BRCA2
Organism
gga
Gallus gallus (chicken)
Pathway
gga03440
Homologous recombination
gga03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
gga00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
416572 (PALB2)
03460 Fanconi anemia pathway
416572 (PALB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gga03400
]
416572 (PALB2)
DNA repair and recombination proteins [BR:
gga03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
416572 (PALB2)
FA (Fanconi anemia) pathway
Downstream FA components
416572 (PALB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PALB2_WD40
Motif
Other DBs
NCBI-GeneID:
416572
NCBI-ProteinID:
XP_004945321
CGNC:
4559
Ensembl:
ENSGALG00000006078
UniProt:
F1NAU2
LinkDB
All DBs
Position
14:complement(7279422..7288994)
Genome browser
AA seq
1341 aa
AA seq
DB search
MATRLPWAREAVVMAEAASGVVLSGAEKEKLREKLALLRREYSETVSRLRRAQRAERAKS
HGGKAAAEGTRRPGTGEAPQSPAGCSDNVSPGAERHKTCHLQTETSSGPDTKVKTSVTFK
HNPEFFNNEVSLQDSSQAESTQASQENASCGLPMLATEEKKKQTSKSMMKLRRRTKILVS
EGKESAHDVHLINADVMVKNQPASVEELRSPVFRRSSFSNTEDSAQIESRPLLMERQESS
LTPPGAEFGVPRDMPEGSIPLGVSELLPCALGYSSDVWQPESPGATVTSDNREAAQPCSE
SGESVSLDASGKKESFRTVKERDSESMCEDQGELRRLLDLMSENEVLPTDTSNNVINESK
IHGGNQNDAGSLNAFPSDLPLDNAEKLVENQQLEIQSRLSHQERVTTPESALNSCTVVEG
LPFPVEYYVRTTRRMSNCQRKVDLDAVILSHLGRSKKGQRSKCKQKDTSLGQSSQETVEN
HLESEVVPFPFLCAESDPVNSSPQKHILTSSGSSTSPGSISQNSIRSTKRDQRQSQRKQK
GKRKSTCKPLLNETSQELIESLDLGMPRESSSLLSNEYQSEKENCEANLEKSSLDGRQFS
VAAALGSELTGMIQPTSTDPPGGSQVLGKCSESRSEQVQNPLQKSDSLNPENETFTSHTS
DLECNLSVSDKHPVKHVKNQQMQRACRAEQLLIVPLRRSLRSSARQRNSHISKGENKRGP
GHQVDSEGPASLGLAAKDPDMSGNLFSFRSFQWLVPKLDIKDFHLPDEEFGLLKLGKYES
SPGNDLEVFVPSVFGDGVASEDAQTLEINAEEKELTTNLLSPFKNGLSELPHLESPVANV
ELSTNEMLFTPMGTVLTGAPAQHESQISSSVFPVLGATPAVLPSVCSKVFPNACSVPPLQ
VSLHSSKEAPAQVKDSRECKDSAIPLHLDNCGAGSARKEEGQGTTCHLEVERCPSNRSDG
AVDLEKHQQSQSKHEGSSRASPEQKNTEAEQLTPVLLDGLREENLQFISKLKDSSGSCAV
DVSSVWWGAAGYRELCVVTACESSVSLWKPQAPDHWEKVYTWQLGEIPVIQIIPVPDTCN
LVCIALGNLEIGEIRLLLYSSENDSFKQSLVKSGNIKAVLGLRDGKLISSSRAMQEQQVE
IVSLSETGRCKDRQTLMPPEETVLAFAEVEGVRDALVGTTAVNSVVVWNLKTGQLLKKMH
IGYSYPASICHRAYSDSGLLFVVLSHPHAKESELCGNPAFRVIAFNPKTARSTGVMFSSL
PPGHTGRYLEGEVKDAWAAAVLTSGAIAVWDLLLGCCTALLPPGSDSRWTLVRWSAAGAG
LLAGRADGSVCVYRYARRGAV
NT seq
4026 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgcggttgccatgggcacgggaggcggtagtcatggcggaggctgcgagtggc
gtggtgctgagcggggccgagaaagagaagctgcgggagaagctagcattgctgaggagg
gagtacagcgagaccgtcagccggctgcggagggcgcagagagccgagcgggccaagagc
cacggcgggaaggcggcggcggaaggaacccggcggcccggaacgggggaggccccgcag
agccccgcaggctgtagtgataacgtatctcctggtgctgaaagacataaaacatgtcac
ctacagactgaaacctcctcaggccctgacacaaaagtgaaaacatctgtcacgttcaaa
cataatcctgagttcttcaataatgaagttagcttgcaggacagctcacaggcagaaagt
acacaggctagccaggaaaatgcttcctgtggacttcctatgcttgccactgaggagaaa
aaaaaacaaacttcgaaaagcatgatgaagctgaggaggaggacaaagattctggtgtca
gagggaaaggaatcagcgcatgatgtgcatctcatcaatgctgatgtaatggtgaaaaac
caacctgctagcgtggaggaacttcggtcaccagtcttcaggcgaagcagtttctcaaac
actgaggacagtgctcaaatagagtccagaccactgctcatggagagacaggaaagcagt
ttaactcctccaggtgcagagtttggagttccacgggacatgcctgagggtagtattcct
ctgggagtgtcagagctgttgccatgtgctctggggtacagcagtgatgtctggcagcct
gagtccccaggtgccacagtcacatctgataaccgggaagctgcacagccatgttcagag
agtggtgaatctgtttcacttgatgccagtggtaaaaaagaatctttcaggacagtaaaa
gaaagggacagcgagagcatgtgtgaagatcagggagaattacgtaggcttttggattta
atgtcagaaaatgaggtgttgcccactgatacaagtaacaatgtgattaatgagagcaaa
atccatggaggaaatcaaaatgacgctggtagtttaaatgcctttccttcagatcttcct
ctggataatgctgaaaaattggtggagaatcagcagcttgaaattcagtcaagactttct
catcaagagagggttacaactcctgaaagtgcactgaactcttgcacggtggttgaaggg
cttccctttccagttgaatactatgtcaggacaactcgacgcatgtctaattgccagaga
aaagtggaccttgatgctgtaattctgagccacctgggcaggagcaagaaaggtcagaga
agtaaatgcaagcagaaagatacaagcttgggtcagtcctctcaggaaactgttgaaaat
catttggagtcagaagttgtgccattccctttcctttgtgcagaaagtgatccagtgaat
tctagtcctcagaaacatattcttacatccagtggtagcagcacttcacctggatcaatt
tctcaaaacagcatcagaagcacaaagcgagaccagagacaatcacagaggaaacaaaag
ggaaaaagaaagtctacctgcaaaccccttctgaacgaaacatcacaggaacttatagaa
agtttggatcttggaatgccaagggaaagcagtagtctgctatcaaatgagtatcagagt
gaaaaggagaactgtgaggctaatcttgaaaaatcatctttggatgggagacagttttct
gttgctgcagctcttgggtccgaattgacaggtatgatacagccaacaagtactgatcct
cctggtggaagccaagtacttggcaaatgcagcgagtctcgttcagaacaagtccagaat
ccactgcagaaaagtgactctctgaacccagagaatgaaacttttaccagccacacaagt
gatctggaatgcaacttaagcgtgtctgataaacatccagtgaaacatgttaagaatcag
caaatgcaaagagcctgcagggctgagcagctcctcatagtccctctgcgccgctccctt
cgctcctctgcaagacagagaaacagtcacatctcaaaaggtgagaacaaaagaggacct
ggccatcaagtggattcggagggtcctgcttctcttggccttgctgctaaagaccccgat
atgtccggcaatctcttttccttccgcagtttccagtggctggtccccaagctggatatc
aaagacttccatctacctgatgaggaatttggactactaaaacttgggaaatatgaatct
tcccctgggaacgacttggaggtttttgttcctagtgtgtttggagatggtgtggcttca
gaggatgcacaaactctagaaataaatgcagaagaaaaagagcttacaactaatctgctt
tcaccattcaaaaatgggttgtctgagttacctcatttggaaagcccagttgccaacgtg
gaactttctacaaatgaaatgctatttactcccatggggactgtcttaactggtgctcct
gctcagcatgagtctcagatttcctcatctgtttttcctgtcttgggtgcaaccccagct
gttttaccatcagtatgcagcaaggtcttccccaatgcatgttctgtacctcctttgcaa
gtgagcctgcattcctccaaagaagcacctgcacaggtcaaggatagtagggaatgcaaa
gactctgccattccactgcacttggacaactgtggtgcaggatctgctaggaaggaggaa
ggacaaggtacaacatgtcatttagaagttgaaagatgtcctagtaatagatcagatggg
gctgtggacttggagaagcatcagcaatcacaaagcaaacatgagggatccagcagagct
tctcctgagcagaaaaacacggaagcagaacagttgactccagtgctgctcgatggcttg
agagaagagaacttgcagttcatttcaaagctaaaggattcttcaggttcttgtgctgtg
gatgtgagcagtgtgtggtggggagcagccggctacagagagttgtgtgtggtgactgcc
tgtgagagttcagtttccctgtggaaacctcaggcacctgaccactgggagaaggtctat
acttggcaacttggagagattcctgtaatacagatcattcctgtgccagacacctgtaac
cttgtgtgtatagcactgggaaatttggagattggagaaataaggctcttgctttattct
tctgagaatgactcattcaagcaatcactagtgaaaagtgggaatataaaagctgttctt
gggctaagagatgggaagctgatcagcagcagcagagccatgcaagagcagcaagtggaa
atagtatcactttcagagacaggaaggtgcaaggacagacagactttgatgcctcccgaa
gaaactgttctggcttttgctgaagtagaaggagtgagagacgccttggttggcaccact
gcagtaaacagtgttgtagtttggaatttgaaaacaggccagctcctgaagaagatgcac
attggctattcctacccagcttcaatctgccatcgagcatattctgactctggccttctg
tttgttgttttaagtcatccccatgccaaagagagcgagctgtgtggaaaccccgcgttc
cgtgtgatcgcgttcaacccgaaaacagccagaagcaccggggtgatgttctcctccctc
ccacctggacacactggaaggtacctggaaggggaggtgaaggacgcctgggctgcagcc
gtgctgacctcgggggccatcgcggtgtgggacctcctgctgggctgctgcaccgcgctg
ctgccgccgggctcggacagccgctggactctggtgcgctggagcgcggcgggcgcaggg
ctgctggcggggcgggcggacggcagcgtctgtgtgtaccgctacgcgcggcgcggggcg
gtctga
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integrated database retrieval system
