Gallus gallus (chicken): 417109
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Entry
417109 CDS
T01006
Symbol
RC3H2
Name
(RefSeq) roquin-2 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
gga
Gallus gallus (chicken)
Brite
KEGG Orthology (KO) [BR:
gga00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gga03000
]
417109 (RC3H2)
04121 Ubiquitin system [BR:
gga04121
]
417109 (RC3H2)
Transcription factors [BR:
gga03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
417109 (RC3H2)
Ubiquitin system [BR:
gga04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
417109 (RC3H2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-CCCH
zf-RING_UBOX
zf-RING_2
zf-CCCH_4
Prok-RING_4
zf-C3HC4
zf_CCCH_4
zf-CCCH_UNK
zf-C3HC4_4
zf-C3HC4_2
Xin
Motif
Other DBs
NCBI-GeneID:
417109
NCBI-ProteinID:
XP_004946062
CGNC:
855
Ensembl:
ENSGALG00000001253
UniProt:
A0A8V1AM79
LinkDB
All DBs
Position
17:complement(9077608..9106027)
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AA seq
1191 aa
AA seq
DB search
MPVQAAQWTEFLSCPICYNEFDENVHKPISLGCSHTVCKTCLNKLHRKACPFDQTAINTD
IDVLPVNFALLQLVGAQVPDHQTVKLSNVGENKHYEVAKKCVEDLALYLKPLSGGKGVAS
LNQSALSRPMQRKLVTLVNCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLSANL
WAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKTSIG
HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRSYEALRREHDAQIVHIAMEAGLRISPEQW
SSLLYGDLAHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNRLRPHLELLANI
DPNPDAASPTWEQLENAMVAVKTVVHGLVDFIQNYSRKGHETPQPQPNSKYKTSMCRDLR
QQGGCPRGTNCTFAHSQEELEKYRLRNKKISATVRTFPLLNKVGVNSTVSTTTGSVISVI
GSPEATVKMVPSTNGIANLESGVPQLIPRCADTSLRALENTKKAGKSGANGQNVSGSPTE
SLPENKIGSPPKTPVSQAAATSAGPPNIGTEVNSVPPKSSQFVPRVPVYPAHSDNVQYFQ
DPRTQLSYEVPQYPQTGYYPPPPTVPAGVAPCVPRFVRSNNVPESSLPPASVPYADHYST
FPPRDRLNSPYQPPPPQPYGPVPPVPSGMYAPVYDSRRIWRPQMYPRDDIIRSNSLPPMD
VMHSSVYQTSLRERYNSLDGYYSVACQPPNEQRTVPLPREPCGHLKTGYDEQLRRKPEQW
AQYHTQKTPLVSSTLPMATPSPTPPSPLFSVDFNTEFSESVNDLSGTKFEEDHLSHYSPW
SCGTIGSCINAIDSEPKDVIANSNAVLMDLDSGDVKRRVHLFETQRRAKEEDPIIPFSDG
PIISKWGAISRSSRTGYHTTDPIQATASQGSATKPISVSDYVPYVNAVDSRWSSYGSDSA
SSARYAERDRFIVTDLSGHRKHSSTGDLLSIELQQAKSNSLLLQREANALAMQQKWNSLD
EGSRLTLNLLSKDIDLRNGETDYSEDCADTKPDRDIELELSALDTDEPDGQGEQIEEILD
IQLGISSQDDQLLNGTTVENGHPLKQHQKESMEQKRQSLGEDLVILEEQKTILPVTSCFS
QPITTSVSNASCLPISTSVSVGSLILKTAHIMSEDKNDFLKPVANGRMVNS
NT seq
3576 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtgcaggcagctcagtggacagaatttctgtcctgcccaatctgctacaacgag
tttgatgagaatgtgcacaaacccatcagcttaggttgctctcacactgtctgtaagacc
tgcctgaacaagcttcatcgcaaggcatgtcctttcgaccagactgccatcaatacagac
atcgatgtgcttcctgtaaactttgcactcctccagttagttggagcccaggtacctgat
catcagacagtaaagttgagtaatgtaggagagaacaaacattatgaagtagcaaagaaa
tgtgttgaggatttagcactctacttaaagccattaagtggaggaaaaggtgttgctagc
ttgaatcagagtgcactgagccgtccaatgcaaaggaagcttgtgacactggtgaattgt
cagctggtagaggaagagggtcgagttagagctatgagagcagctcgatcactgggcgag
agaactgttacagaattgatcttgcagcaccaaaatcctcagcagctttctgccaatctt
tgggctgctgtcagggcacgaggatgtcagtttctagggccagctatgcaagaggaggca
ctgaaacttgtattactggcactggaagatggctccgcactctcaagaaaagttctggta
ctttttgtggtgcaaaggctagaaccaagatttcctcaggcctctaaaacaagcattggt
catgttgtgcagctactgtatagagcatcatgctttaaggtgacgaaaagggatgaagat
tcttctctgatgcaacttaaagaagagtttcggagttacgaggctttgcggagggaacat
gatgcccaaattgttcacattgccatggaagcaggacttcgaatatcaccagaacagtgg
tcttcccttctttatggtgacttggcacataaatctcacatgcagtccattatcgacaag
ctccaatctccagagtcttttgcaaagagcgtgcaagaattgacgatcgtcttgcagcgc
acaggcgatcctgcaaacttaaacaggctgagacctcatttagagctcctggcaaacata
gacccaaatccagatgcagcatctccaacatgggagcagctggaaaatgcaatggtggct
gtaaagacggtggtacatgggctggtggatttcattcaaaattacagtagaaaaggccac
gaaactccacagccacaaccaaatagcaaatacaaaacaagtatgtgccgagaccttcga
cagcaagggggatgtccaagaggaaccaactgtacgttcgctcattctcaggaagagctt
gaaaaatatcgcttgaggaacaaaaaaatcagtgcaacagtgagaacattcccccttcta
aataaagttggcgttaatagcaccgtctcaaccactacaggaagcgtaatttctgtcata
ggaagccctgaagcaacagtgaagatggtgccaagtactaatggaatagctaatttagaa
agtggtgttccccaattgatccctcgctgtgcagacacctccctaagagctttggagaac
accaagaaggcagggaagagtggagccaatggccagaatgtttctggatcccctacagaa
tcactacctgaaaataaaattggttctccacccaagactcctgtaagccaggcagcagct
acctcagctggtcctcctaatattggaacagaagttaattctgtgcctccaaaatccagc
cagtttgttcccagagtacctgtttaccctgcacattctgataacgttcagtatttccaa
gatcccagaactcagctgtcgtatgaagttccacagtacccacagacaggatactatcca
ccacctccaacagtaccagctggcgtggctccttgtgttcctcgctttgtgaggtccaat
aatgttccagaatcctccctcccacctgcttccgtgccatatgccgatcattacagtacg
tttccacctcgagatcgactgaattctccttaccaacctcctcctccgcagccgtatgga
ccagttcctcctgtcccttctggaatgtatgctccagtttatgacagcaggcgcatctgg
cgcccacagatgtacccacgggatgatattattaggagcaattctttacctcccatggat
gtgatgcactcatctgtctatcagacatcattacgtgagagatacaactctttggatggg
tattactctgtggcttgtcaacctccaaatgaacagaggactgtgcctttaccaagggag
ccttgtggtcacttgaagactgggtatgatgaacaattacgacggaagccagaacagtgg
gcacaatatcacacacagaaaactcctcttgtatcatcaacccttcctatggcaacacca
tctccaacaccaccttctcctctcttcagtgtagatttcaacacagagttctctgagagt
gtcaatgatttgagtggaactaaatttgaggaagatcatctctctcactattcaccatgg
tcttgtggcactattggctcttgtataaatgctatcgactcagagcccaaggatgtgatt
gccaattcaaatgccgtgttaatggatttggacagcggtgatgttaaaaggagagtgcat
ttatttgaaactcagagaagggcaaaggaagaagatcctataatcccatttagtgatgga
ccgatcatttccaagtggggtgcaatctccaggtcatcccgcacgggttatcacacaaca
gatccaattcaggccactgcttcccaaggaagtgcaactaagcccatcagtgtatcagat
tatgttccttatgtcaatgctgttgactcaaggtggagttcttatggctcagattcagca
tcatcagcacgttatgcagaacgggacagattcatagttacagatttgtctggtcacaga
aagcattccagcactggagatctattaagtattgaattacagcaggccaaaagtaactca
ttattacttcagagagaagcaaatgcactagccatgcaacagaagtggaattctctagat
gaaggcagtcgacttaccttaaatcttttaagcaaggatattgatttgaggaatggtgag
actgattatagtgaagactgtgccgatacaaagccagatcgagacattgaattggagcta
tctgctcttgatacagatgaacctgatgggcagggtgaacaaatagaagagattctggat
atacagctgggtatcagttctcaagatgatcagctgctcaatggaacaactgtagagaat
gggcatccactaaagcagcaccagaaagaatctatggaacagaagagacaaagtttaggt
gaagaccttgtgattctggaggagcagaaaacaatcctgcccgtaacttcttgcttcagt
cagccgatcacaacatctgttagcaatgcaagctgcctgcccatcagcacatcagtcagt
gttggcagcctcattttgaaaactgctcacattatgtctgaggataaaaatgacttttta
aagcctgttgcaaatggcaggatggttaacagctga
DBGET
integrated database retrieval system
