Gallus gallus (chicken): 417170
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Entry
417170 CDS
T01006
Symbol
SETX
Name
(RefSeq) probable helicase senataxin isoform X2
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
gga
Gallus gallus (chicken)
Brite
KEGG Orthology (KO) [BR:
gga00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gga03021
]
417170 (SETX)
Enzymes [BR:
gga01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
417170 (SETX)
5.6.2.5 RNA 5'-3' helicase
417170 (SETX)
Transcription machinery [BR:
gga03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
417170 (SETX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
AAA_19
AAA_30
Viral_helicase1
AAA_22
UvrD-helicase
AAA_16
SLFN-g3_helicase
RNA_helicase
TniB
SAS4
ResIII
Motif
Other DBs
NCBI-GeneID:
417170
NCBI-ProteinID:
XP_004945969
CGNC:
2674
Ensembl:
ENSGALG00000003661
LinkDB
All DBs
Position
17:complement(6788559..6819929)
Genome browser
AA seq
2587 aa
AA seq
DB search
MNVCRWCTPSGLDATEYLKSYASKQLSPEDLEGSNDDLCYCLECVVEYHKAREKLPSLHQ
VLLELETSRLVAHIEKSIREEAGEDDELFIVDENGETQLPVYVGPDFENNLRVPLLEVLK
YPYLLLHEKVSELCVEVLCRMEENHTSFQVFEKYPGIYLFLVHPNEVIRRWAILTARNLG
KVDRDDYYDLQEVLTCLFKVIELGLFESPDIYRSSVIEKGKLILLPSHLYDNSNYKNYWL
GICMLLTVLEEQAMDSLLLGPDKQNDFMQSILHTMEKEADDDSTDPFWPALHCFMVILDQ
LGSKVWGQLIDPVQAFQTIINSVSYNNEIKNIRNNFVRTKSELKTDYDDEMVTCSQIVYT
CNTEKPQKDTGWKTAICPDYCPNMYEDMQTLANVLQSDIGRDMRVHHSTFLWFIPFVQSL
MDLKDLGVAYIVEVIHYLCSEIKDILNERIQRCDKVSEFFLLILVSIIELHRNKKCLHLL
WISSQEWVEAVVRCAKLPAIAFTRCTEKVAGSNARGSSTISLQAFNSVQHACVQLIRSLL
KEGYQIGQHALCKQYLDKLNLLLRGNLSLGWQLNIQETQELQTCLKQVIRNLKSRALNAS
VSVENNANSTALPTVSLKQEKSAPGSGYKTSVHGRENLCSPVAFISKEGEDGCCQEISFT
GRNSAWEEDCKDSSKNSKSLTSTDCLLVNIKKEPKDLITQECESLQKSFAKEMYGKVLEN
RNNDLMSGNCAMGNQGFSTSIQSLNFRRSGVLENKQETEAVSPAYLSAQTCVDSPEHVCS
SDVKGRNASAGSSSEFKDGHRLGHLHFQTHSAEGHSRPLPQIADLKNCSSATSASEAEQL
VFCTGSSCMRKDCGKHQGVNTVGENEDRESAGISRSSESTWEKSAFQYGLVSKNQEQKEM
PLDCFSFAKSQPGLQGNKDNSILLADTSDTLLQNVSTKDDSSLLLKSVCLKDQEQPNLGD
LDKCDRKGQISKTSCTVKKSVSDHIPSGSENKGVMSNTALPVGPLAVKCEPSERLIVCSK
YFMRENNAEGKEEEDFVRMVSGHNTSTNSQIDKELSKLSLAAYAKSVNFPSESSQESSMH
HNICDVKRKVKSAVRSSNSAQSNQSLCDTDSHGNKIIIILDSSDEENGVTVNEETKELNE
NMCPEKQPVSEMQHDVTGSTLESKMPNSPLPLEDCDSQYFEFETEIDVFSVWQDTQEYKQ
DCVSASIDSHSDGLSQDHTNEWGYDTDYISDGAMEEETKWTREEINTSHQKETDNTEVTN
STLQEFSTKENAKDEVEISTDGSTVDKDFILNAELTEPRASTSSVSLASKLAFKKSTLSP
RKNTTKSKVARSIQRSPKATALSATQTKKLFQSTLKRIQPGRTTPAVVPPKKARQCPAPT
STVEKLGLKKAPRKAFELSQRSLDSLAQLRSYGKVAGKVGVAQRGKVKRTAHPSLSTQIN
KKMLACQDLQFLKQTRLSKSVRVKNTPRCSEDRSKKVNTMDTKSVKQKAKCSDQPSVEKQ
REKQTGETFYPSVNERGHVTSISAENEAAQTTFVSDCSGSNKAKDCDVMVPPVPMDSSLC
SDATVGDDKGKPEGGCTVQPESGVTPSKENECKPDENSDDDDNLFLTQLDPVDMELCSQD
EDAEGNTIATTRTEEMEIDHAESLQQNDTLTVVKCKYKDCTEKVKKIGDCCSRHLATNSE
SDHLFAKPSSLPPRKPSTTKIFSSVSSSRNAAFSKDLENVEKQPPALKSRASIAKPAVLR
PRSEKAIPTRKQTCRTPSSSNIPQPYISNNVLQSRNNTQINNASNISRWPVQAERCSSFL
GAQQHDHNIFVKEVLKWTYEMFANSIQFGPPSTLVQSVVASVPIRFQGYNDYFNTFFPLM
MLNAFETLAQEWVENQKMKDKTYYLHLQNFCADLNTAEFIGYFEETDLTKQLHPKEDDLI
FLVGQKKKNVFGEDREVEDHLVNHVGLVRRFSRASGCLTRQNDQHTVCHLSVQTRGNLSF
FVNNEVKCMVVGSLVPTQRSFKGLLLLSRSPLAKPIINPSYSDFCPRDLPVSSESATFCM
NEYNEDQKRAIETAYAMVKQHPGLAKICLIHGPPGTGKSKTIVGLLSRVLRENTRNEKTS
KKNAKIKQNRFLVCAPSNAAIDELMKKIIIAFKEKCQNRQEPLGNCGDIKLVRLGAERSI
NSEVRAFSLDKQVEHRMKRKPTDRDQDIQKKKAALDEKLDMLSRQRAMHRCEKRESQMLD
DEIGRLSKERQQLASQLKEVRGHSQKVQTDIILESDIICCTLSTSGGGLLESAFWRQGLD
PFSCVIVDEAGQSCEVETLIPLIHRCNKLVLVGDPRQLPPTIKSIKAQEYGYGQSLMARL
QRHLEEQVQNNLLRRLPVVQLTVQYRMHPDICLFPSSYIYDKTLKTDKATEENRCSSEWP
FQPYLVFDVGDGHEERDKDSFSNPQEVKLVLEIIRTIKEKRKDLGLRRIGIITPYSAQKK
KIQEELDRVFKNNSPGEVDTVDAFQGREKDCIIVTCVRANSSKGSIGFLASLQRLNVTIT
RARFSLFILGRLKTLMEQKSFHLYKCALSFALAAASSAGILFLLQWQYKLQIKAWEVCLN
PVSPCDE
NT seq
7764 nt
NT seq
+upstream
nt +downstream
nt
atgaacgtatgtcgatggtgtacaccgagtggtcttgatgccactgaatacctgaagagc
tatgcttctaaacagttgtccccagaagatcttgaaggttccaacgatgatctctgttac
tgcttggagtgcgtggtggaataccacaaagcaagggagaaattgccaagcttgcatcag
gttttattggaattggaaacatcccgtctcgtagcccacattgaaaaatccataagagaa
gaagctggagaagatgatgagttgtttatagtggatgagaatggagagacacagctgcct
gtttatgttggaccagattttgagaataacctgagagtgccacttctagaagtgctgaaa
tacccatatctgctgctgcatgagaaagtcagtgagctttgtgtagaagtgctgtgtaga
atggaagaaaatcacacctcctttcaggtttttgagaaatatccaggaatttatctattt
ttggtacacccaaatgaagtgattcgtcgttgggccatcctgacagcaaggaatttaggg
aaggttgacagggatgattactatgacttacaggaagtgttgacttgcttgtttaaagtt
attgaactggggctttttgagagtccagatatttacagatcttcagtgattgaaaagggg
aaactcattcttctgccatcccatttatatgataatagcaactacaagaactattggcta
ggtatttgtatgctgctaacagtgctggaagagcaagctatggactccttgttactgggc
ccagacaaacaaaatgacttcatgcagtctatacttcacaccatggagaaagaagcagat
gatgattccactgaccccttctggccagcactgcattgtttcatggttattttggatcag
cttggatctaaagtatggggtcagcttattgatcctgtccaggcctttcaaaccattatc
aacagtgtgagctacaacaatgaaataaagaatatacgcaataactttgtaaggacaaaa
tctgaactgaagacagactatgatgatgaaatggttacttgcagtcagattgtatatact
tgtaacacagaaaagcctcaaaaggatactgggtggaaaacagctatttgtccggactac
tgccccaacatgtatgaagatatgcaaacactggctaatgtgcttcagtctgatattggc
agagatatgcgtgtccatcacagcacgtttctgtggttcattccttttgtccagtcacta
atggatctcaaggacttgggtgtggcatatatagtagaggtcattcactacctctgttca
gaaatcaaggatattcttaatgagagaatccagcgctgtgacaaagtctcagaatttttt
ctgttgatcttggtgtcaattattgaactacacagaaacaaaaagtgcctgcacttgctg
tggattagctcacaagagtgggtggaagcagtggtgagatgtgctaagcttccagcaatt
gcatttacacggtgtactgagaaagtagctggcagcaatgcaagaggttcatcgacaata
tctttacaggcttttaactctgtgcagcatgcttgtgtgcagttgatacgcagccttctt
aaagagggctatcagatcggtcagcatgcactatgcaagcaatatttggacaaactcaat
ctccttctgcgaggaaatctatctttaggttggcagctgaacatccaagaaactcaggaa
ttacaaacatgtttaaagcaggttataagaaatttaaagagcagagcactgaatgcgtct
gtatctgtagaaaacaatgcaaactctacagctttacccactgtttctttgaagcaagag
aagagcgcacctggtagtggttataagacgagtgtacatggcagagagaacctttgttca
ccagttgccttcatatcaaaggaaggtgaggatggatgttgtcaagagatctctttcact
ggcagaaatagtgcgtgggaagaggattgtaaagattcatctaaaaattcaaaatctttg
acctctacagactgcctgttggtaaatattaaaaaggaacctaaggacttgataactcag
gagtgcgaaagcctccagaagtcatttgcaaaagaaatgtatgggaaagttctggaaaat
aggaacaatgatcttatgtcagggaactgtgctatgggtaatcagggctttagtacaagt
attcagagtttgaattttagaagaagtggagtgttggaaaacaaacaggaaacagaagcc
gtatcaccagcgtatctatctgctcaaacttgtgttgattctccagagcatgtttgcagc
tcagatgtaaagggaagaaatgcgtctgccggttcctcttcagagtttaaagacgggcat
agacttgggcatcttcattttcagacacacagtgctgaagggcactctagaccgttacct
caaatagcggatttgaaaaactgcagttctgcaacaagtgcttccgaagcagagcaactt
gtgttttgtactggcagctcatgtatgaggaaagactgtggtaagcatcagggagtaaat
actgtgggtgaaaatgaagacagagaatcagcaggtatttcaaggagttctgaaagtacg
tgggagaaaagtgcttttcaatatgggctggtctccaaaaaccaggaacaaaaggagatg
ccactagactgcttcagctttgctaaaagtcaacctggcttgcaaggaaacaaagataac
agtattttgcttgcagatactagtgacaccttactgcaaaacgtatccaccaaagatgac
tcaagtttgttgttgaagtctgtctgtcttaaagaccaagaacagcctaatttaggtgac
ctagataaatgcgaccgtaaaggtcaaatttcaaagacatcctgtacagttaaaaagtca
gtgagcgatcacattccatctggttctgaaaataagggagttatgtccaacactgctctt
ccagttggtccgctggcagtcaaatgtgaaccaagtgaaaggttgatagtatgctcaaaa
tacttcatgagagaaaacaatgcagagggaaaggaagaagaggattttgtgaggatggtt
tctggacataatacttcaacaaactcccagattgataaagagctcagtaaattgtcgtta
gctgcttatgccaaaagtgtcaattttccctcggagtcaagccaggaaagctcaatgcat
cataatatatgtgatgttaaaaggaaagtgaaaagtgctgtaagatcctccaacagtgcc
cagagcaaccagtctctctgtgatacagatagccatggcaataaaatcattataatttta
gattcttccgatgaagaaaacggtgttactgtcaatgaggaaacaaaagaacttaatgaa
aatatgtgtcctgaaaagcaacctgtatcagaaatgcagcatgatgttacaggtagcaca
ttagagtcaaagatgccaaactctcccttgccacttgaagactgtgactctcagtacttt
gagtttgaaacagaaattgatgtcttttcagtttggcaggatactcaagaatataaacaa
gactgtgtttcagcatcgattgacagtcattcagatggcttatcacaggatcacacaaat
gaatggggttatgatacagattatataagtgatggtgccatggaagaagaaacaaagtgg
acaagagaggagataaatacttctcatcagaaagaaactgataatacagaagtaactaat
tcaactttgcaagaattttctactaaagaaaatgcaaaagatgaagtggagatttctact
gatggaagtactgttgataaagacttcattctgaatgcagaattgacagaacccagagct
tctacatccagtgtctcattagcttcgaagctggcatttaagaaaagtactctgagccca
cgtaaaaatacaactaaatctaaggtagcaagaagtattcagagaagtcctaaagcaaca
gctctgagtgcaacacaaactaaaaaactatttcaaagtacgttaaaaagaattcagcct
ggcaggacaacgcctgctgttgttcctccaaagaaagctcggcagtgtcctgcaccaaca
tcaacagtggaaaaacttggtctgaaaaaggcaccccgcaaagcatttgaattgtcccag
cgctctttagatagtctagctcagttgcgtagttatggtaaagttgcagggaaagttgga
gttgcacagagagggaaggttaaacgaactgctcatccgagtttatctacacaaattaac
aagaaaatgctggcttgccaagaccttcagtttttaaagcaaacaaggctcagcaaaagt
gttcgagtgaaaaatactccgaggtgttcggaggatagaagcaagaaagttaacacaatg
gataccaagtctgtcaaacaaaaggctaaatgttctgatcaaccatctgttgaaaagcaa
agagaaaaacaaacgggagagaccttttatccatctgtcaatgagagaggacatgtcact
agcatctctgcagagaacgaggctgcgcaaactacttttgtctctgattgttcaggctca
aacaaagctaaagactgtgatgtaatggttcctcctgtaccaatggattcaagtctgtgt
tctgatgccactgttggagatgataaaggtaaaccagaaggaggttgcaccgtccagcct
gaatctggggtgacaccttcaaaagaaaatgagtgcaaaccagatgaaaacagtgatgat
gatgataatttatttttaactcagttagatcctgtggatatggaattgtgttcccaggat
gaagatgctgaaggcaatactatagctactacaagaacagaggaaatggaaatagatcat
gctgagagccttcagcagaatgataccttgactgttgtgaagtgtaagtacaaagactgt
acggaaaaagtgaaaaaaataggagactgctgtagcaggcatttggccacaaattcagaa
tcagatcacttgtttgccaagccttcttccctgccaccaagaaaaccttccactaccaaa
atcttcagctcagtaagttcttcgcgaaatgcagccttcagcaaagatctcgaaaatgtt
gaaaaacaaccaccagctttaaaaagcagagctagcattgcaaaacctgctgtgttgaga
ccccggagtgaaaaggctataccaacaagaaagcaaacatgcaggactccaagttccagt
aatattcctcaaccttatatttctaataacgttctccagtcgcgaaataatacacagatc
aacaatgcttcaaatatttccagatggcctgtccaagcagaacgttgttcttcctttctt
ggagctcagcagcacgatcataatatttttgtaaaggaggttctgaagtggacttatgaa
atgtttgcaaactccattcagtttggacctccaagtactctcgtgcaatctgtagtggcc
tctgttcccatcagatttcagggatacaatgactattttaatacgtttttccctttgatg
atgctaaatgcctttgaaacactggcacaagagtgggtagaaaaccagaagatgaaagac
aagacttactacttacacttacagaacttctgtgctgatttgaatacggcagagtttata
ggttattttgaggaaactgatttgacaaagcagctccatccaaaggaggatgacttaatc
tttctggttggccagaagaagaaaaatgtctttggggaagacagggaggttgaggaccac
ctggtgaatcacgttggtcttgtgaggcgattttctcgtgcatctggctgcttaactaga
caaaatgatcagcatactgtctgtcatctttctgtacaaactcgaggaaatttgtcattc
ttcgtaaataatgaagtgaagtgtatggtggttggctccttagtgcccacacaacggtca
ttcaaaggtctgctactactgagcaggagtcccctggctaaacccatcataaatccaagt
tacagtgatttctgtccaagggatttgcctgtatcttcagaaagtgctacgttttgtatg
aatgaatacaacgaagatcaaaagagagccattgaaacagcttatgccatggtaaagcaa
catccagggcttgccaaaatctgtctcatccatggaccacctggaactgggaagtccaaa
actatagttggacttttgtctcgtgttttgagagagaacaccaggaatgagaaaacaagt
aaaaaaaatgccaagataaagcaaaaccgttttctggtttgcgcaccatccaatgctgca
attgatgaactcatgaaaaagatcatcattgcatttaaggagaaatgccaaaacagacaa
gagcctttgggaaactgcggtgatatcaaattagtgcgactgggtgctgaaagatcaatc
aacagtgaagtccgggcttttagcctggataagcaagttgaacatagaatgaaacgaaag
ccaactgaccgtgaccaggatattcagaagaaaaaagcagctctggatgagaagctggac
atgctctctcgtcagcgtgccatgcacagatgtgaaaagagggagagtcaaatgctagat
gatgaaattggcaggctttcaaaggagagacagcaacttgcttctcaactaaaagaggtt
cggggacactctcagaaggtacagacagatatcatcttggagtctgatataatctgctgc
acactgagcacaagcggaggaggtcttctagaatctgctttctggaggcaagggctcgat
cctttcagctgtgtcattgtggacgaggcagggcagtcgtgtgaagttgaaacactgatt
ccactgattcatcgctgtaataagcttgtccttgttggagatcccaggcagctccctccc
actataaaatcaataaaagctcaggaatatggctatggtcagtccttaatggcacgcctg
cagagacacctagaagaacaagtacagaataatcttttacgacgtctgccagttgtgcag
ctgactgtgcagtaccgaatgcaccctgacatctgccttttcccatccagttatatttat
gacaagactctaaagactgacaaagcaacagaagagaacagatgttcttcagagtggcca
ttccagccctatcttgtttttgatgtaggagatggccatgaggagcgtgacaaagactct
tttagtaatccccaagaagtgaaactggtgttagaaataattagaacaattaaagaaaaa
agaaaggatctaggtcttcgtcgcattggaataattacaccttacagtgcacagaaaaag
aaaattcaagaggaactagacagagtgttcaagaataacagcccaggagaagtggataca
gtggatgcatttcaggggcgagagaaagattgcatcatagtgacatgtgtccgggcaaac
agctctaaagggtcaattgggtttctggcaagtcttcagcgtttgaacgttacaattacc
cgagccagattcagcctcttcatccttggaagactgaaaacactcatggaacagaagagc
tttcatttatacaaatgtgccttgagttttgctcttgctgctgcttcgtcagctggaatc
cttttcctcttgcagtggcagtacaaactgcagattaaagcctgggaggtctgtttgaac
ccagtgagtccttgtgatgaataa
DBGET
integrated database retrieval system
