Gallus gallus (chicken): 417563
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Entry
417563 CDS
T01006
Symbol
RPA1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
gga
Gallus gallus (chicken)
Pathway
gga03030
DNA replication
gga03420
Nucleotide excision repair
gga03430
Mismatch repair
gga03440
Homologous recombination
gga03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
gga00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
417563 (RPA1)
03420 Nucleotide excision repair
417563 (RPA1)
03430 Mismatch repair
417563 (RPA1)
03440 Homologous recombination
417563 (RPA1)
03460 Fanconi anemia pathway
417563 (RPA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gga03000
]
417563 (RPA1)
03032 DNA replication proteins [BR:
gga03032
]
417563 (RPA1)
03400 DNA repair and recombination proteins [BR:
gga03400
]
417563 (RPA1)
Transcription factors [BR:
gga03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
417563 (RPA1)
DNA replication proteins [BR:
gga03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
417563 (RPA1)
DNA repair and recombination proteins [BR:
gga03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
417563 (RPA1)
MMR (mismatch excision repair)
417563 (RPA1)
DSBR (double strand breaks repair)
HR (homologous recombination)
417563 (RPA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
RADX
CATSPERD-E_C
DUF4939
IBR
Motif
Other DBs
NCBI-GeneID:
417563
NCBI-ProteinID:
NP_001006221
CGNC:
2225
Ensembl:
ENSGALG00000003072
UniProt:
Q5ZJJ2
LinkDB
All DBs
Position
19:5568674..5596912
Genome browser
AA seq
614 aa
AA seq
DB search
MSVRLSEGAIAAIMQGENVYKPVLQVINTRAIATGNGPPRYRVLMSDGVNTLSSFMLATQ
LNPLVEEERLSAHCICQVNRFIVNSLKDGRRVVILMDLDVLKTADMVGGTVGNPVPYNEG
QGQQRSSAPTANAAPNKPQQQDGNLSVAGSAAPKYHAPSNQFSKASAPSSVKTPGGTQSK
VVPIASLNPYQSKWTICARVTQKGQIRTWSNSRGEGKLFSIELVDESGEIRATAFNDQAD
KFFPLIELNKVYYFTKGNLKTANKQYTAVKNDYEITFNNETSVVPCDDAQHLPSVQFDFV
SISDLENTPKDSIVDVIGICKSYEDVTKIVVKASNREVSKRNVHLMDTSGKLVTATLWGN
EAEKFDGSRQPVIAIKGARVSDFGGRSLSVLSSSTVVVNPDSPEAFKLRGWFDSEGQLLE
CASISDVRGGSASGVNTNWKTLYEAKSERLGQGDKADYFSCVGTIVHLRKENCMYQACPS
QDCNKKVIDQQNGLYRCEKCDREFPNFKYRMMLLVTIADSLDYQWVTCFQESAEFILGQS
ATFLGELKDKNEQAFEEVFQNANFNTYEFKIRVKLETYNDESRIKATALDVKPVNYREYS
KRLIASIRRNAQLG
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtccggctgagcgaaggcgccatcgcggccataatgcagggagagaacgtctac
aagcccgtgctgcaagtcattaacacgcgggctatcgccacaggaaatgggcctccacgg
taccgagtgctgatgagcgacggggtgaacactctctcctcattcatgctggcgacacag
ctgaaccccctcgtggaagaggaacgcttatcagcacactgtatttgccaggttaacaga
ttcattgtcaacagcttgaaagatggaaggagagtggttatactgatggatttagatgtt
ctgaaaactgctgatatggttggtgggactgttggcaatccggtgccgtacaacgaaggg
cagggacagcaacgttcttcagctccaacagccaacgcagcacctaacaaaccacagcaa
caggatggcaatttgtcagtagcaggttctgctgctccaaagtaccacgctccctcaaac
cagtttagtaaagccagtgctcccagctcagtgaagacaccaggaggaacgcagtccaaa
gtagtgcccattgccagcttgaatccataccaatctaagtggaccatttgtgctcgtgtt
acccaaaaagggcagatccgcacatggagcaactcccgtggtgaagggaagctcttctct
atagagctcgttgatgagagtggtgagattagagctactgcattcaatgatcaagcagac
aagttctttcctctcattgaactgaacaaggtatattattttaccaaaggcaatttgaag
actgctaacaagcaatatacagctgttaagaatgattatgagattacattcaataatgag
acttcagttgtgccctgtgatgatgcccagcatcttccatctgttcagtttgattttgta
tccatctctgacttggagaacacacccaaagactcaattgtcgatgtaattggaatttgt
aagagctatgaagatgtcactaaaattgtagtgaaagctagcaatagggaggtatcgaag
aggaatgtgcatctgatggatacatcagggaaactggtgacagctacgctatggggaaat
gaggctgagaagtttgatggctccagacaacctgtgatagccatcaaaggagcccgagtc
tctgattttgggggtagaagcctgtctgtcctgtcatcgagtacggtggttgtcaaccct
gatagcccagaggctttcaagctccgaggatggtttgactctgagggacagcttctggaa
tgtgcctccatctctgatgtgagaggtgggtcagcatcgggggtgaataccaactggaaa
actttgtacgaagccaaatcagagaggttgggacaaggagataaggcggattattttagc
tgtgtgggcacaatagtacatctgcgcaaagagaactgcatgtaccaggcctgtccctct
caggattgcaataagaaagtgatagaccaacagaatggactgtatcgttgcgagaagtgc
gaccgtgaattccccaacttcaagtaccgcatgatgctgctggtgaccattgcagactct
ctagattaccagtgggtgacttgcttccaagagtcagcagaattcattcttgggcaaagt
gctactttcctgggagagctgaaggacaagaacgagcaggcgtttgaagaagtctttcaa
aatgcaaatttcaacacgtacgagttcaagatcagagtaaaactggagacgtacaatgat
gaatctcgtattaaggctacagcactggacgtcaaacctgtaaactacagagaatacagc
aagaggttgatcgcgagcatcaggagaaatgctcagctaggatga
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integrated database retrieval system
