Gallus gallus (chicken): 418064
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Entry
418064 CDS
T01006
Symbol
RTCB
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
gga
Gallus gallus (chicken)
Brite
KEGG Orthology (KO) [BR:
gga00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gga03016
]
418064 (RTCB)
Enzymes [BR:
gga01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
418064 (RTCB)
Transfer RNA biogenesis [BR:
gga03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
418064 (RTCB)
Prokaryotic type
tRNA splicing ligases
418064 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
418064
NCBI-ProteinID:
XP_416300
CGNC:
9570
Ensembl:
ENSGALG00000012611
UniProt:
F1NYI3
LinkDB
All DBs
Position
1:53286595..53300334
Genome browser
AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKIDKNCWRIKKGFVPNMHVEGVFYVNDPLEKLMFEELRNACRGGGAG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSRAKKRGLPQLGTLGAGNHYAEIQVVDDIYNE
YAARKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
VEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDMHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHAAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcagctacaacgatgagctccagtacctggacaagatcgacaagaactgctgg
cggatcaagaagggcttcgtgcccaacatgcacgtggagggcgttttctacgtgaacgac
ccgctggagaagctgatgttcgaggagctgcgcaacgcctgccgcggcggaggtgcgggt
ggttttttgcctgctatgaaacagattgggaatgtggctgcattgcctggaattgttcat
agatccataggcctgccagatgtccactctggctacggctttgccattggcaacatggca
gcctttgatatgaatgatcctgaagcagtggtgtcaccaggtggtgtcggatttgacatc
aactgcggtgtccgcttactgcgtacaaatttggatgaaagtgatgtgcagcctgtgaag
gagcagctcgcccaggctatgtttgaccacattcctgtcggtgtcggttcaaagggtgtc
atccccatgaatgccaaggatttggaagaggctctagagatgggtgtagactggtctctc
cgggaaggctatgcctgggcagaggacaaggaacactgtgaggaatatggaagaatgttg
caggctgatcccaacaaagtctcttcgagagcaaagaagaggggcctgcctcagctgggg
accctgggagcaggaaatcattatgctgagatccaggttgtggatgacatttacaatgaa
tatgctgccaggaagatgggcatcgaccacaaaggacaggtttgcgtcatgatccatagc
ggcagcagaggtttgggccaccaagttgccacagatgcattggtggctatggaaaaagct
atgaaacgggacaaaatcatagtgaacgatcgccagctagcgtgtgccaggattgcctct
gtggagggacaggattatttgaagggaatggcagccgctggaaactatgcgtgggtcaac
cgttcttccatgacctttctaacaagacaggcttttgccaaagtctttaacacaacccca
gatgacctcgatatgcatgttatctatgatgtgtctcacaacattgccaaagtggagcaa
cacgtagtggatgggaaggaacggactctactggtgcacagaaaaggatcaaccagagcc
ttccctcctcaccatcctcttattgctgttgattatcaactgactggacagcctgttctg
attggtggaactatgggcacgtgtagctatgttcttactggcacagagcaaggcatgact
gagacgttcggaactacttgccatggagctggtcgtgcactgtctcgagccaaatctcga
cgtaacttggacttccaggatgtactggacaagctggctgacatgggcattgccatccgt
gttgcttctcccaaactggtcatggaagaagcaccagagtcctataagaatgtgacagat
gtcgttaatacctgccatgcagctggcatcagcaagaaagcaattaagttgagacctatt
gctgttataaaaggctag
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