Gallus gallus (chicken): 419021
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Entry
419021 CDS
T01006
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
gga
Gallus gallus (chicken)
Pathway
gga03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gga00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
419021 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gga03021
]
419021 (PCF11)
03019 Messenger RNA biogenesis [BR:
gga03019
]
419021 (PCF11)
Transcription machinery [BR:
gga03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
419021 (PCF11)
Messenger RNA biogenesis [BR:
gga03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
419021 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
Motif
Other DBs
NCBI-GeneID:
419021
NCBI-ProteinID:
XP_004938948
CGNC:
12962
Ensembl:
ENSGALG00000017249
UniProt:
A0A8V0Y3A9
LinkDB
All DBs
Position
1:190407183..190427905
Genome browser
AA seq
1690 aa
AA seq
DB search
MSAPESSAGSSEAREDACRDYQSSLEDLTFNSKPHINMLTILAEENVPFAKDIVSLIEAQ
IAKAPASEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRST
WDDIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEESTASTSAVT
SGASTPPAVPEIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQLAVSLSVQQ
GSSSIPSVPAPSKPHVSQTPHMPVKTPTQASLQSEKIKPSPSPPLHDVKIVNRDPRLNRM
SQHSSHAKDQSHRKEFPPNTTGQSDTKASKTSQSEKQSSTKQEKVKAGEKTQKKEPDQLE
TKSKSPSPLKNKLPNTKDTKTQESESTKVSEMSKRDPRLKKHLQEKPESKGDEVKEKRRN
TEKKEKDEHKTGEHRPVGSRNKTVNGVVQKQDVTTEESEKQGGKQGRSSNRKRSRSRSPK
SRSPSTHSPKRRERRSPKRRLRSLSPTSSTPKIGKIRQIGPKQSHTEEASQGARDERNSN
KRNVKQEVRDPRRVKKSQEDRPQEIASQHSTKASPDPKENAENWQGSKAGKRWKSGWEEN
KNSQQTEEHQAAGKSPHQRHRENWPAAKGILSPRAPKQQHRLSVDANLQIPKELTSASKR
ELLKKANDRLASGEITQDEFLVVAHQIRQLFQYQEGKHRCNVWDSPTEEKGSLKRKPLLS
DAELTYYEHKAKLKRTQVQHSLSRLDLLDPDDILDYRVPDALLSGIDCEQAKAKRGVQFE
RKEPFGERSRRHSPVSGTSRPFADNLSPLEGRRRLEEQNATKGSRGSKNFNPYDNWGESD
EFRDALRQQGKGTAEFQKIDGDAVCRFDNREERQLLGKAGVRDEPRSPFNERFKRARYDD
PDKEPFPDSPGSRFGGIEAKPRISALMEDRPLFDGSSRPSAARVGADGQGSPFIDSPTAG
SSSRIDGPPGQAALRFEGPLVGAGASQFDGPLAGAGGAGALRFDGPPGALRFEGPQGQVG
GGGPLRFEGPIGQIGGPLRFEGPAGQPVGGPRFEGPGVGLRFEGPRGQPSGGLRFEGPHG
QPLGPRGQPGGGLRFEGPHGQPLGPHGQAGGGLRFEGPHLQPLGPHGQPGGGLRFEGPHG
QPMGPHGPSGGGLRFEGPHGPPGVGPRLIDGPVHQGVGGLRFDGPLGRSGPRFDGCHAGF
DGQPGQLSLLQRFDGIHGQPGPRFERAPGQPAQPRFDAAIPQRFDGPHQPASRFDLPLGL
HGARFENIASHPASRLEMSPYGQSGPFVDHPGQGFSGPAHGMQFQRPEMFDSSLGPNFSG
PAGPGGQNFSLRASGHYFDDKLQGPQYGNFNSMSMGGHQVSHMSAQPGPYGQGQQYLPNP
GSFVQNPAGGALPHSYPDNHLGQLDVNELFAKLLSTGILKLSKTDSTSAQANETSAQPAA
EEEDDDQGDHDVPDLTNFKVEELRQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLD
WHYRQNRSEKDVSRKITHRRWYYSVTDWIEFEEIADLEERAKSQFFEKAHEEVVLKTQEA
AKEKEFQSVPAGPAGAVERCEICREQFEQYWDEEEEEWHLKNAIRMHEKIYHPSCYEDYQ
NTSSFDCTPSPSKTPVENPLNIMLNIVKQETDESCDSPQVKEEPDDTPAACAEESTPASI
DVKTEPDESV
NT seq
5073 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccccggagagcagcgctggtagcagcgaggcccgggaggacgcgtgccgcgat
taccagtcatcgctggaggacctgacgttcaacagcaagccgcacatcaacatgctgacc
atcctggccgaggagaacgtgcccttcgccaaggacatcgtctccctgatcgaggcgcaa
atcgccaaggctcctgcgtcagagaagctccctgttatgtaccttatggattccattgtc
aagaatgttggaagagagtatcttactgcatttactaaaaacctagttgcaacatttatt
tgtgtatttgaaaaggtggatgaaaatactaggaaaagtttatttaagttacgctccaca
tgggacgatatttttcctttgaagaaactatatgcacttgacgtcagagtcaactcatta
gatcctgcttggccaattaaacctctgcccccaaatgtgaatacttctagcatccatgtg
aatcctaagtttttaaataaatcgccagaggaatctactgcatctacctctgctgtcact
tctggtgcctctactcctccagctgttcctgaaatacaaaagaatttgacacaggagcaa
ctgataaggcagcaattgcttgcgaagcaaaaacagttgttagaacttcagcaaaaaaag
ttagagttggagttggaacagactaaagcacagttggctgtttctctaagtgttcagcaa
ggatcatcttctataccttcagttccagcaccttccaagccacatgtgtcccagacacct
cacatgccagttaaaacacctactcaggcttcactgcaatctgaaaagatcaaaccatcc
ccaagtcctccacttcacgatgtcaaaatagtaaacagggatcctcgacttaatagaatg
tcgcaacattcttctcatgctaaagatcagtctcataggaaagaatttccaccaaacaca
actggtcagtctgataccaaggcaagcaaaacatcccagtctgaaaaacagagctcaaca
aaacaagagaaagtgaaagctggtgaaaaaacacagaagaaagaacccgatcaattggaa
acaaagtcgaaatcaccatctcctttgaaaaacaagcttccgaatactaaagatactaaa
acccaagaatctgaaagcacaaaagtatctgaaatgagtaaacgggatccaagactgaaa
aagcatcttcaagagaaaccagagagcaaaggggatgaggtgaaagaaaagaggagaaat
acagagaaaaaagaaaaagacgaacataagacaggtgaacataggccagtaggcagcaga
aataaaacagttaatggtgttgttcagaaacaagacgtgactacagaagaatcggaaaaa
cagggtggaaaacaagggagatccagtaatagaaaacggtcacgatcccgctctcctaag
tcacggtcaccatctacacactctccaaaacgaagagagaggagatcacccaaaagaaga
ctcaggagtttatctccgacttcttcaactcctaaaattggaaagatacgtcagataggt
cctaagcagtctcatactgaagaagcctcacaaggggcaagagatgaaagaaattctaat
aagcgaaatgttaaacaagaggtgcgagatccaaggagagtgaaaaaaagccaagaagac
agaccccaagaaatagcaagccagcattctacaaaagcttctcccgatccaaaggagaat
gcagagaattggcagggatccaaagcaggcaagaggtggaaatccggttgggaggaaaat
aaaaactcgcagcagactgaagaacaccaagcggctggtaaatcccctcaccaaagacac
cgagaaaactggcctgctgctaaaggaattctgtcacctcgtgcaccaaaacagcagcac
cggttaagcgtggatgccaatttacaaattcccaaagaactgacatctgcaagcaaaaga
gaattacttaaaaaggccaatgaccgcttagcatctggtgaaataacccaagatgagttt
cttgtggtagctcatcagattcgacagttattccagtaccaggaaggaaagcacagatgt
aatgtgtgggatagccctacagaggaaaaaggctctttgaaaaggaagcctcttctatct
gatgcagaattaacatactatgagcataaagctaaactgaaaagaacacaagttcagcat
tcattgtcaagacttgatctcttggatcctgatgatattttggattatcgtgtaccagac
gcgttgctttctggaatagactgtgagcaagcgaaagcaaagcgtggagtacagtttgaa
agaaaagaaccttttggagaaagatcaagacggcactctcctgtaagtggaacaagcaga
ccctttgctgataacctttcgccgcttgagggtcgacgaaggcttgaggaacaaaatgct
actaaaggaagcaggggttcgaaaaacttcaatccttatgacaactggggagaatcggat
gaattcagagatgctctcagacagcagggaaaaggtacagcagagttccagaagatagat
ggtgatgccgtctgtaggtttgataaccgtgaagaaagacagctgcttgggaaagctggt
gttcgagatgaaccaagatcaccattcaatgaacgtttcaaaagagctagatacgatgat
ccagataaagaaccatttccagacagtccagggtcaagatttggaggcatagaagcaaag
ccaagaataagtgcactaatggaagacagacctttatttgatggctcatctagaccatct
gctgcaagagttggggcagatggacaagggagtccttttattgatagtcctactgctggc
tcaagttctagaattgatgggccacctggacaggctgctctgagatttgaggggcctttg
gtgggggcaggtgcttctcagtttgatggacccctggcaggagcagggggagctggagcc
ctgagatttgatgggccaccaggggcgctcaggtttgaaggaccacagggacaggttggt
gggggaggtcctctgaggtttgaggggcctattgggcagataggtgggccattgcggttt
gaggggcctgcaggccagcctgtgggtggtcctagatttgaaggacctggagttggtctc
aggtttgagggaccccgtggtcagccttcaggtggtctcaggtttgagggacctcatggt
caacctctggggcctcgaggtcagccagggggtggtctcaggtttgagggaccgcacggt
cagcccttggggcctcacggtcaagcaggaggtggtctcaggtttgagggtccgcattta
cagccattggggccccatggtcaacctggaggtggcctcagatttgaggggccacatgga
cagcctatggggccacatggaccgtcaggaggtgggctcagatttgaggggccacatgga
ccgccaggtgtagggccgaggttgattgatggaccagtgcaccagggagttggtggactt
agatttgatggtcctctggggcggtctggtccgagatttgatggctgtcatgctggcttt
gatggtcaacctggacagctgtctcttttgcaaagatttgatggaattcatggacagcct
ggcccaagatttgaaagggctcctggccagcccgcacaaccgcgatttgatgcagccata
cctcaaagatttgatggtcctcaccagccagcctcgagatttgacctgcctcttggactt
cacggtgcacgttttgaaaatatagctagccatcctgcctcacgattggagatgtcgcca
tatggacaaagtggtccgtttgttgaccatcccggacagggtttcagcggaccagctcat
ggaatgcagttccaaagacctgaaatgtttgacagttcactaggaccaaatttcagtggg
ccagctggcccaggaggacagaatttttcattgagagcatctggacattatttcgatgac
aaacttcagggtcctcaatacggaaacttcaatagtatgtcaatgggaggtcatcaggtt
tcgcacatgtctgctcagccaggaccttatggccaaggtcaacagtatttaccaaatcct
ggaagctttgttcagaaccctgcaggaggagcccttccacattcatatcctgataaccac
cttggtcagcttgatgtcaatgaattgtttgccaaactgttgtcaacaggaatcctcaaa
ctgtcaaaaacagattccacttcagcacaagcgaatgaaacatctgcacagccagctgct
gaagaggaggatgatgaccagggtgatcatgatgtcccagacctcacaaactttaaagtt
gaagaactcagacagcgttatgatagtgttataaatcgactatacactggaattcagtgc
tactcgtgtggaatgagatttactacttcacagacagacgtttatgcagaccatttagat
tggcactatcgccagaaccgttcggaaaaagatgttagcagaaaaattacacacagaagg
tggtactacagcgtaacggattggattgagtttgaagaaatagctgacttagaggagcgt
gcaaaaagccaattttttgaaaaagctcatgaagaagttgtactgaagacacaggaagct
gcaaaagagaaggagtttcagagtgtccctgctggaccagctggagcagttgagaggtgt
gaaatctgccgggagcaatttgagcagtactgggatgaggaagaggaggagtggcatcta
aagaatgctatcagaatgcatgaaaagatttaccatccatcctgttatgaggattaccaa
aatacatcatcatttgattgcacaccctctcccagcaagacccctgtagaaaatccccta
aatattatgttgaacattgttaaacaggaaacagatgagtcctgtgactcacctcaagtg
aaagaggaacctgatgacacccctgctgcctgtgcagaagagagcacacctgcatctata
gatgttaaaacagaacctgatgagtctgtttag
DBGET
integrated database retrieval system
