Gallus gallus (chicken): 419542
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Entry
419542 CDS
T01006
Symbol
ARID1A
Name
(RefSeq) AT-rich interactive domain-containing protein 1A isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
gga
Gallus gallus (chicken)
Pathway
gga03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
gga00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
419542 (ARID1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gga03000
]
419542 (ARID1A)
03021 Transcription machinery [BR:
gga03021
]
419542 (ARID1A)
03036 Chromosome and associated proteins [BR:
gga03036
]
419542 (ARID1A)
Transcription factors [BR:
gga03000
]
Eukaryotic type
Helix-turn-helix
ARID
419542 (ARID1A)
Transcription machinery [BR:
gga03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
419542 (ARID1A)
Chromosome and associated proteins [BR:
gga03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
419542 (ARID1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
419542
NCBI-ProteinID:
XP_015153042
CGNC:
207
Ensembl:
ENSGALG00000029316
LinkDB
All DBs
Position
23:complement(142792..202595)
Genome browser
AA seq
2307 aa
AA seq
DB search
MAAQVVPAAASSLGAPAPAELKKAEAQQRDCPPEEAGGEAAAERGGEKQAESEGPPGKEL
QDAAESNGGGAGAESDLKSSNGNPGPRPAAAAATLNNNLPEPPGGGGISDGVGAPQQQQP
PQQPPPSHPAALPPPAYGFGQPYGRGAQAAAAAAAAAAAAAAFHQHGGQQSPGMAALQSG
GLEQSYPGPAGAPAGPPPPQNSHGGTEHGFPNHQYNSYYAAGAGRSAGSYPPPPQAYALS
SPRGSAQSSAQAAAGAKSPAAAFQQQRFGVMGPSAAGGAGGGGATPQPTATPTLNQLLTS
PSSARGYQGYPGGDYSGGPQDGGAAGKGPAAVDMVSQYGGGNSQGWAAAPGGAPPRSHHA
PMSPGSSGGGGGGQSLGRSQQPSSPMDQMGKMRPQPYGGNNPYTQQQGPQAGPQQGHGYP
GQPYGPQTPQRYPMGMQSRTQSTMGSISYAQQAAWETTPGSRRDRCMRICGILPSTRGSS
RAIPPYGQQGPNAYGQQSQTPYYNQQSPHPQQQQPPYSQQTPSQTPHSQPSYQQQQQPQS
QAPQLQTSQPAYSQQQSQPPHQQSPTPYPQQQSTAQQHQQNQPPYSQQQSQSPYQQQQQT
QQTASSALSQQSSSYPQSQPQQQQSAYSQQRFPPPQELSQESFGSQTSSAPSMASSKGQE
DMNLNIQSRPSSLPDLSGSIDDLPMGTEGALSPGVSTSGISSSQGEQSNPAQSPFSPHTS
PHLPGIRGPSPSPVGSPASVAQSRSGPLSPAAVPGNQMPPRPPSGQSDSIMHPSMNQSSI
AQDRGYLQRNPQMPQYSSPQPGSALSPRQSSGGQMHAGMGPYQQNSMGSYGPQAGQYGPQ
GGYPRQPNYNALSNANYPSPGMGGSMNPMAAGSQMHGQSGVPPYSGLPPGRMSHAAMGNR
PYGPNMANMPPQVGTGMCPPPGSMNRKAQEAAAAAMHAAANSIQNRPAGYPNMNQGGMMG
TGPPYGQGINSMAGMINPQGPPYPMGGNMANNSAGMAASPEMMGLADVKLTPATKMNNKA
DGTPKAESKSKKSSSSTTTNEKITKLYELGGEPERKIWVDRYLAFTEEKAMGMTNLPAVG
RKPLDLYRLYISVKEIGGLTQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQCLYAFEC
KIERGEDPPPDIFAAADSKKSQTKIQPPSPAGSGSMQGPQTPQSTSSSMAEGGDLKPPTP
ASTPHSQMPPLPGIRSNSVGLQDAFTDGSDPTFQKRNSMTPNPGYQPSMNTSDMMGRMSY
EPNKDPYSSMRKAPGSDPFMSSGQGPNSGMGDPYNRAAGPGMGNMAMGQRPHYPYGGPYD
RVRTEPGMGPEGNLAAGTPQPNIMPSTSESGMYSPSRYPQQQQQQQRHDSYGNQFSTQGT
SSGSPFPSQQTTMYQQQQQNYKRPMDGSYGPPAKRHEGEMYNVPYSAGQGQTQQQLPPAQ
TQQPSQQQAAQPSPQQDLYNQYGSTYPAADRRSAGGPQNQFPFQFGRDRVSAPPGSNAQQ
NMPPQMMGGPIQSAPEGPQQGAMWQGRNEIGYSYPNRQSTGSAPQGPAYHGVTRTDDILH
SEQRVNHEGPWPSHGNRQPPYGPSAPVPPMTRPPQSNYQTPPSMQNHIPQVSSPAPLPRP
LENRTSPSKSPFLHSGMKMQKAGPPVPASHITPAAVQPPMIRRDITFPPGSVEATQPVLK
QRRRLTAKDIGTPEAWRVMMSLKSGLLAESTWALDTINILLYDDNSIMTFNLSQLPGLLE
LLVEYFRRCLIEIFGILKEYEVGDPGQRTLLDPQRFCRSSASSHEEGEEDEELRSLNNEE
EEDDEEEEEAAFSSKDKAPLECSEEKLVSKFDKLPIKIVQKNDPFVVDYSDKLGRVQEFE
SGLLHWRIGGGDTTEHIQTHFESKMELPMIHKRASCNSVSRKRAAAESNPSTREGEALPS
DSSSEKRITATMDDMLSARPSSLSGEEEEAKASETEKESKFPFGISPAQSHRNIKILEDE
PHSKDETPLCTIQDWQDSLAKRCICVSNIIRSLSFVPGNDFEMSKHPGLLLILGKLILLH
HKHPERKQAPLTYEKEEEQDQGVSCNKVEWWWDCLEVLRENTLVTLANISGQLDLSPYPE
SICLPILDGLLHWAVCPSAEAQDPFPTLGPNAVLSPQRLVLETLSKLSIQDNNVDLILAT
PPFSRLEKLYSTLVRFLSDRKNPVCREMAVVLLANLAQGDSLAARAIAVQKGSIGNLLGF
LEDSLAATQFQQSQAGLMHMQNAPFESTSVDMMRRAARALLALAKVDENHSEFTLYESRL
LDISVSPLMNSLVSQVICDVLFLIGQS
NT seq
6924 nt
NT seq
+upstream
nt +downstream
nt
atggctgctcaggtcgtccccgccgccgccagcagcctgggcgccccggctccagccgag
ctgaagaaagcggaggcgcagcagcgggattgtcccccggaggaggcggggggtgaggcg
gcggcggagcgcggcggcgagaagcaggcggagagcgagggccccccggggaaggagctg
caggacgcggccgagagcaacggagggggcgcaggggccgagtccgacctgaagagctcg
aacgggaacccgggccccaggcccgccgctgccgccgccaccctgaacaataacctcccg
gagccgcccggtggcggcggcatcagcgacggggtgggggcgccgcagcagcagcagccg
ccgcagcagcctcccccttcccacccggccgccttgcccccgccagcctacggcttcggg
cagccctacggccggggcgcccaggctgctgccgccgccgccgccgctgcggccgccgcc
gctgccttccaccaacatggcggacaacaaagccctggcatggcagcgctgcagagcggg
ggcctggagcagtcttacccggggccggcgggagcccccgcggggccgccccctccccag
aactcgcacggcggcaccgagcacggcttccccaaccaccagtacaactcctactacgcg
gccggcgccgggcgcagcgccggctcctacccgcctcccccccaggcctacgccctgagc
tccccccggggcagcgcgcagagctccgctcaggcggccgccggcgccaagtcccccgcc
gccgccttccagcagcagcgcttcggggtcatggggccctcggccgccggcggagcagga
ggagggggcgccaccccgcagcccacggctacccccaccctcaaccagctcctcacctcc
cccagctccgcccgcggctatcaggggtaccccgggggcgactatagcggcgggccgcag
gacgggggagccgccggcaagggccccgccgccgtggatatggtctcgcagtacggcggg
ggcaacagccagggctgggccgcagcacccggcggagccccgccgaggagtcaccacgcg
cccatgagccccgggagcagcggcggcggcggcggcggacagagcctcggccggagccag
cagccttcaagcccaatggatcagatggggaagatgaggcctcagccgtatggaggaaac
aacccctacacacagcagcagggacctcaggcagggccacagcaaggacacggctatcca
ggacagccctatgggccacagactccccagagatatcccatgggaatgcaaagcaggaca
caaagtacaatgggcagcatctcgtatgcgcagcaggctgcatgggaaaccacacctgga
tccaggcgtgatcgatgcatgaggatctgtggaatccttccttccacaagaggcagcagc
agagcaattccaccttacggacagcagggtcccaacgcatatgggcagcaaagccagact
ccatattacaaccagcaaagccctcatccccagcagcagcagcctccatattctcagcag
actccatcccagacccctcactctcagccttcttatcagcagcagcaacagcctcagtct
caagctccacagcttcagacatcgcagcctgcgtattcgcagcagcagtcccagccgccc
catcagcagtccccaactccatatcctcagcagcagtccacagcccagcagcatcaacag
aatcagcctccctactcacagcagcagtcacagtcaccctaccagcagcagcagcaaact
cagcagacagcttcctcggctctttctcagcagtcatcttcataccctcagtcacagccg
cagcagcagcagtctgcatattcccagcaacgcttcccccctcctcaggagttatctcaa
gaatcgtttggctcccagacatcatctgctccctcaatggcttccagtaaagggcaagag
gatatgaacttgaatattcagtccagaccttctagcctgccggacctgtctggttcaata
gatgatctacccatgggtacagaaggagccctgagtcctggagtaagcacatcagggatt
tccagcagtcaaggagagcagagtaatccagctcagtctcctttctctccacatacctct
cctcacctgccaggcatcagaggaccttccccatcccctgttggttctccagctagtgtt
gctcagtcccgctctggtccactttcacctgctgcagtaccaggcaatcagatgccacca
cgaccacccagtggccagtcggacagtatcatgcatccttccatgaaccagtcaagcata
gcgcaagatcgaggttacttgcagaggaatcctcagatgccccagtacagctctccccag
cctggctcagccttatctccccgtcagtcttctggaggacagatgcacgctggaatgggg
ccgtaccagcagaactccatgggaagctacggaccccaggccgggcagtacggacctcaa
ggaggttatcccaggcagccaaactacaatgctctgtccaatgccaactaccccagtcct
gggatgggagggagcatgaacccaatggcagcagggagccagatgcatgggcagagtggt
gtgcctccatacagcgggcttcctcccgggaggatgagccacgcagccatggggaacaga
ccttacggacctaacatggcaaatatgcctcctcaggtggggacagggatgtgcccccca
ccagggagcatgaatcgcaaagcacaagaagcggctgctgccgccatgcatgcggctgcc
aactccatccagaacaggcctgctggttatcccaacatgaaccaagggggaatgatgggc
actggacctccttacggacagggaattaacagcatggctggcatgatcaacccccagggc
ccaccttatcccatgggtgggaatatggctaacaattctgcagggatggcagcaagtcct
gaaatgatgggtcttgcggatgtcaaattaactcctgcaactaaaatgaacaataaggct
gatgggaccccaaaagcagaatccaagtcaaagaagtccagttcctctactacaaccaat
gagaagatcaccaaactctatgagctgggtggtgagcctgagaggaagatctgggtagat
cgttacctagcctttactgaagagaaggcaatgggcatgacaaacctcccagcagttggc
agaaaacctttggacctttaccggctctacatctcagtgaaggagattggaggattgact
caggtcaacaaaaacaagaaatggcgtgagttagccacaaatctcaatgtgggcacgtcc
agcagtgcagctagttctttgaagaagcagtacatccagtgtctctatgcctttgagtgc
aagattgagcgaggtgaagacccccctccagatatctttgcagctgctgattcaaagaag
tctcagactaagatacaacctccatctccagcgggttcaggctcgatgcaggggcctcag
acgcctcagtccaccagcagctccatggcagaaggaggagacctgaagcctccaactcca
gcatctacaccacacagtcagatgcctcctttgccaggcatcaggagtaactcagtgggc
cttcaagatgcctttacagatggcagtgatcccacgttccagaagcggaactccatgact
ccgaatccagggtaccagcccagcatgaatacctctgacatgatgggtcgcatgtcttat
gagccaaataaggatccttatagtagtatgaggaaagctccaggaagcgatcccttcatg
tcctcagggcagggccccaacagtggtatgggtgacccttataatcgtgctgcaggtcca
gggatgggtaacatggccatgggacagcggccacactatccctatggtggtccttacgac
agagtgaggacggaaccaggcatgggaccagagggcaacttagcagctggaactccacag
ccaaacatcatgccttccacctcggaatcggggatgtactctcccagccgctaccctcag
cagcagcagcagcagcaaagacatgattcctatggcaatcagttctccactcaaggcacg
tcctcgggcagccccttccctagccagcaaactaccatgtatcaacagcaacagcagaat
tacaagcgaccgatggacggcagctatggcccacctgccaagcggcatgaaggggagatg
tacaacgtcccatacagcgctgggcaggggcagacacagcagcagctgcctccagcacag
actcagcaaccgagccagcagcaggctgcacagccttctccacagcaggacctgtataac
cagtatgggagcacataccctgctgctgatcgccgatctgccggagggccgcagaaccag
ttcccattccaatttggcagagacagggtctcggctcccccaggctccaatgctcagcaa
aacatgcctcctcagatgatggggggtcccatccagtctgctccagagggcccccagcaa
ggcgccatgtggcaagggcgcaacgaaatagggtacagctatccaaatcggcagagcact
ggctctgcaccccaggggcctgcttatcacggagtgactcgaacagatgatatactgcat
tcagaacagagggtaaaccatgagggaccatggccttcccatgggaatcggcagcctccg
tacggcccctctgcccctgttcccccgatgactaggccacctcagtctaactatcagacc
cctcctagcatgcaaaatcacattcctcaggtatccagcccagcacctctgcccagacct
ctggagaatcgcacttctcccagtaaatctccgtttctgcactcggggatgaaaatgcag
aaggcaggacctccagtccctgcctcacacatcacaccagcagctgtacagcctcccatg
atacgaagagacatcaccttcccaccaggatcagtagaagctactcaacctgtattaaag
caaaggaggcggctgacagcaaaagatattggaactcctgaagcttggagagtgatgatg
tctctgaagtctgggctgctagctgaaagtacgtgggccttagataccataaacatcctg
ctctatgatgacaacagcataatgaccttcaacctcagccagttgccaggcctgctggaa
ctcctggtggagtatttccggcgctgcttgatcgagatctttggaatcctgaaggaatat
gaagtgggagacccagggcagagaacactattagatccccagaggttctgcagatcttca
gcttcttctcatgaggaaggggaggaggatgaggaactacggagcctgaacaatgaggag
gaagaagatgatgaggaagaggaggaggctgcattttcgagcaaggacaaagcacctcta
gagtgcagcgaggagaaattagttagtaaatttgacaagcttccgatcaagattgtgcag
aagaatgacccgtttgtggtagattattcagacaagctgggacgagtgcaggagtttgag
agtggcctgctgcactggcggattggtggcggtgacactactgagcacattcagacccac
tttgagagcaagatggagctacctatgattcacaaacgagcatcctgcaattctgtctca
aggaaacgcgcagcagctgagagcaatccaagcactagggaaggagaggctcttccatct
gacagctcctcagagaagagaataactgccaccatggacgacatgctttcagcacgtcca
agctcattatcaggggaggaggaagaggccaaagcttcagaaacagagaaggaaagtaag
tttccatttggcattagtccagcacagagtcacagaaatataaaaattctggaggacgaa
cctcacagtaaagatgagacgcccctctgcaccatccaagactggcaggactctctggcg
aagcgctgcatctgtgtctccaacatcatcaggagtttatcgtttgtgccaggcaatgac
tttgaaatgtccaaacatcccgggctgctgctgattctagggaaactgattctcttacac
cacaagcacccggagcgcaagcaggcacccctgacctatgagaaggaggaggagcaggac
caaggggtgagctgcaacaaggttgagtggtggtgggactgcctggaggtgctgcgtgaa
aatacactggtcacgctggccaacatttctggccagctggacctgtccccttacccagaa
agcatctgtttgcctatcctggatggactccttcactgggcagtatgtccatcagcagag
gcccaggacccctttccaacgctggggccgaatgcggtcctctcccctcagagactggtt
ttggaaacactcagcaaactcagcatccaggacaacaacgtggatttgattcttgcaact
ccccctttcagtcgcttggagaagctgtacagcaccctggtgcgtttccttagtgacaga
aagaacccggtgtgtcgagagatggctgtggtcctactggccaacttggcacagggggac
agcctggcagcgagagcaattgctgtgcagaaggggagcattggcaacttgctgggcttc
ttggaggacagcctggccgccacgcagttccagcagagccaggctggcctgatgcacatg
cagaacgcaccctttgagtcgacgagcgtggacatgatgcgccgggctgctcgggcgctg
ctcgccctggccaaggtggacgagaaccactcggagttcacattgtacgaatcgcggctg
ttggacatctccgtgtcgcctttgatgaactctttggtttcacaagttatttgtgatgta
ctatttttaattggccagtcatga
DBGET
integrated database retrieval system
