KEGG   Gallus gallus (chicken): 419556
Entry
419556            CDS       T01006                                 
Symbol
SNRNP40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
gga  Gallus gallus (chicken)
Pathway
gga03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:gga00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    419556 (SNRNP40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:gga03041]
    419556 (SNRNP40)
Spliceosome [BR:gga03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    419556 (SNRNP40)
 Complex C
   U5 SnRNP specific factors
    419556 (SNRNP40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_TEP1_2nd WDR55 EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EML NBCH_WD40 WDR90_beta-prop_4th Beta-prop_EIPR1 ANAPC4_WD40 Beta-prop_SCAP Beta-prop_SPT8 WD40_MABP1-WDR62_1st Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_Vps41 Beta-prop_WDR19_1st Beta-prop_WDR75_2nd eIF2A Beta-prop_WDR35_TULP_N Beta-prop_NWD2_C Cytochrom_D1 WDR54 WD_LRWD1
Other DBs
NCBI-GeneID: 419556
NCBI-ProteinID: NP_001006308
CGNC: 381
Ensembl: ENSGALG00000000615
UniProt: Q5ZKW7
LinkDB
Position
23:complement(678604..689359)
AA seq 388 aa
MIEQQKRKAPGGPVPGPVPGPAPGPGAGSAPGAAPGPTPGPDLPLVPSAAKRPRHDPPAA
GGGGGGGGQPSTGALLQSGPPRCSSLQAPIMLLSGHEGEVYCCKFHPGGNTLASAGFDRL
ILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKG
HTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAVQTFQNTYQVLAVTFNDTSDQII
SGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRIWDVRPFAP
KERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAGGSADRFVYVWDTTSRRILYKLPGHAGS
VNELAFHPEEPIILSASSDKRLYMGEIQ
NT seq 1167 nt   +upstreamnt  +downstreamnt
atgatcgagcagcagaagcgaaaggccccgggtggccccgtcccaggccccgtcccaggc
ccagctcccggtcccggcgctggctccgcgcctggcgctgcccccggccccacgccgggt
cctgatctcccgctcgtgccctcggcggccaagcggccccgccatgaccccccggcggct
ggcggaggcggcggaggcggcgggcagccctcaaccggagctcttctgcaatcgggccct
ccgcgctgctcctcgctgcaggcgcccatcatgttgctgtcggggcatgagggagaggtg
tactgctgcaagttccaccccggcggcaacaccctggcgtctgccggctttgataggctg
atcctgctatggaacgtctacggggactgtgataactatgccaccctgaagggacacagt
ggggcagtcatggagctgcactataacacggatggcagcatgctcttctcagcatccaca
gacaagactgtggctgtgtgggacagtgagactggagagagagtgaagaggctgaagggc
catacctcatttgtgaactcctgctaccctgcaaggcgaggacctcaacttgtctgcaca
ggcagtgatgatgggacagtgaagctgtgggatatcaggaaaaaagctgctgtccagaca
tttcagaatacttaccaggtcttggctgtaactttcaatgacaccagcgatcagatcata
tctgggggcattgacaacgatattaaggtgtgggaccttcgccagaacaagctcacgtac
acgatgagaggacacgcagactcagtgacaggcctcagtctgagttcagaaggctcttac
ctgctctctaacgcaatggataacacagttcgcatctgggatgtgcgaccgtttgccccg
aaagagagatgtgtaaagattttccaggggaacgtgcataattttgaaaagaatcttttg
aggtgctcctggtcaccagatgggagtaagatagcagggggatccgctgacaggtttgtc
tatgtgtgggacaccacatccaggaggattttgtacaagctgccgggccacgcggggtca
gtgaacgaactggctttccatccagaggagcctattatactctctgcatccagtgacaag
aggctgtatatgggggagatccagtga

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