Gallus gallus (chicken): 419959
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Entry
419959 CDS
T01006
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
gga
Gallus gallus (chicken)
Pathway
gga03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gga00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
419959 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gga03041
]
419959 (DDX42)
Enzymes [BR:
gga01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
419959 (DDX42)
Spliceosome [BR:
gga03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
419959 (DDX42)
Complex B
419959 (DDX42)
Complex C
U2 SnRNP specific factors
419959 (DDX42)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
ERCC3_RAD25_C
DUF460
Motif
Other DBs
NCBI-GeneID:
419959
NCBI-ProteinID:
NP_001026097
CGNC:
360
Ensembl:
ENSGALG00000000581
UniProt:
Q5F485
LinkDB
All DBs
Position
27:2459085..2475507
Genome browser
AA seq
944 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAITPGKKEEPKLSQQSHSAFGTAGSSAAFAKSGPPQLPSFY
KIGSKRANFDEENAYFEDEEEDNSNVDLPYIPAENSPTRQQFNSKSADSDSDDDPLEAFM
AEVEDQAARDMKRLEDKDKEKKNAKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIEYPPFEKNFYDEHEEITSLTPQQVVELRHKLN
LRVSGAAPPRPGSSFARFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKV
ISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNPWFRKSRFKGGKGKKPNIGGGGLGY
RERPGLGSESSDRGNNNSVMSNYEAYKPSSGAMGDRLTAMKAAFQSQYKSHFVAASLNNQ
KTGSSAAGASGWTSAGSLNSVPTSSAQQNAANPDSPIAATAAAKGVPGFTSTGTLSSVPT
FPSVGVQGYSNNSSANASAGNREGVGSAGSAPRGGSSGGGGGGIVRERYSDNRNSRHNEV
PRRGEGGGRYNDVQHHGEGGGRYSDAYRHGEGRHGDSHRHAEGRHFTDTGGGNRNNVDGR
NISEGRSNESRNGENRKDANSRDNKTDGFAVPEPPKRKKSRWDS
NT seq
2835 nt
NT seq
+upstream
nt +downstream
nt
atgaattggaataaaggaggacctggtacgaagagaggctttggttttggtggatttgcc
ataacccctggaaagaaagaggagccgaagctttctcagcagtctcacagtgcttttgga
acagccggttcttctgctgcgtttgcaaaatcaggccctccacagctgccttctttctac
aaaattgggtcaaagcgagcgaatttcgatgaagaaaatgcgtactttgaggatgaagag
gaggataacagcaatgttgacctgccatacattcctgcagagaattcccccactcggcag
cagtttaattccaaatcggctgactctgacagtgatgatgatcctctggaggcgttcatg
gctgaagtggaggatcaagctgctcgagacatgaagaggctggaggataaagacaaggaa
aaaaagaatgctaagggtattcgagatgacattgaagaggaagatgaccaagaagcttat
tttcgctacatggctgaaaaccccactgctggtgtggtgcaagaagaggaagaggataac
ctggagtatgacagtgatgggaatccgattgcgccatccaaaaaaatcattgatcctctt
ccacctattgaccattcagagattgaatatcccccatttgagaaaaatttctatgacgag
catgaagagatcaccagtctgaccccacagcaagtggtggagttacggcacaagctgaac
ctgcgggtctccggtgctgctcctccaagaccaggcagtagttttgctcattttggattt
gatgagcagcttatgcatcaaattaggaaatctgagtatacccaacctacgcctatacaa
tgtcagggtgttccagttgccatgagtggcagagatatgattgggatagctaagactgga
agtggaaaaacagcagccttcatctggccaatgctgattcacatcatggatcaaaaggag
cttgaaccaggagatggccccattgcagtgattgtatgcccgaccagagagctttgccaa
cagatccattcagaatgtaagcgctttggaaaggcatacaatctgcgctcagtagcagtc
tatggaggaggaagcatgtgggagcaagccaaagccctccaggagggggcagagatcgtc
gtttgcacaccaggtcgtttgattgatcatgtgaaaaagaaagctacaaaccttcaaaga
gtaacttatcttgtgtttgatgaagcagacagaatgtttgatatggggtttgaataccag
gtcagatcaattgcaagccacgtgcgtccagacagacagacccttttgttcagtgccacc
ttccgtaagaagattgagaaattggcccgagatattctgatcgacccaattcgagtggtg
cagggagacattggagaggcaaatgaagatgttactcaaatagtggagattttcccctct
ggccccagcaagtggaactggctgacacggcgccttgtggagttcacatcttctgggagt
gttctcctgtttgtcactaagaaggcaaatgctgaagagctggctaataacctcaagcag
gaggatcataacctggggctccttcatggtgacatggaccagagcgagaggaataaagtc
atttcagaatttaagaaaaaggggatcccgatactggtagctactgatgtagcagctcgt
gggttggatattccttccattaagactgtgatcaattacgatgtggctcgggacatagac
acacacacccacagaatcggacgtaccggcagagcaggcgagaagggagttgcctacacc
ctgctgactcccaaggacagtaacttcgctggggatcttgtcagaaatctggaaggtgct
aatcaacatgtttccaaagagctgttggatctagcaatgcagaacccgtggttccggaaa
tcccgtttcaaaggaggaaaaggcaagaagctgaatattggtggtggtggcttaggatat
cgtgagcgtcctggtctgggatcagagagctctgaccgtggcaacaacaacagtgtgatg
agtaactatgaagcgtacaagccatcgtctggggcaatgggagacagacttacagcaatg
aaagcagcttttcagtctcagtataagagccactttgttgctgcaagcttaaataaccaa
aagactggaagctctgctgctggtgctagtggctggactagtgctgggagcttgaactca
gtacctacaagttctgcacaacaaaatgctgcaaaccctgacagccccattgcagccaca
gcagcagcaaagggcgtcccagggttcaccagcaccgggactctgagcagcgttcccacc
tttcccagcgtcggggtgcagggctacagcaacaacagcagcgcaaacgccagtgccggt
aatcgggaaggcatcggcagtgccggcagcgctcctcgtggtggcagcagcggaggtggt
ggcggtggcattgttagggaacgctacagcgacaacaggaacagtcggcacaatgaggtc
ccgcgccgaggagagggcggcggtcgctacaacgacgtgcagcaccacggagagggaggt
ggtcgctacagtgacgcttatcggcacggggagggccgacacggggacagccatcgccac
gctgagggccggcacttcgccgacacgggagggggcaatcgcaataacgttgacggcagg
aacatcagcgaagggaggagcaacgagagcaggaatggtgagaacaggaaggatgccaac
agccgagacaacaagacagatggtttcgctgtcccagagcccccaaaacgtaagaagagc
cgatgggacagttaa
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integrated database retrieval system
