Gallus gallus (chicken): 420378
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Entry
420378 CDS
T01006
Symbol
SMARCC1
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X2
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
gga
Gallus gallus (chicken)
Pathway
gga03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
gga00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
420378 (SMARCC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gga03021
]
420378 (SMARCC1)
03036 Chromosome and associated proteins [BR:
gga03036
]
420378 (SMARCC1)
Transcription machinery [BR:
gga03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
420378 (SMARCC1)
Chromosome and associated proteins [BR:
gga03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
420378 (SMARCC1)
PBAF complex
420378 (SMARCC1)
GBAF(ncBAF) complex
420378 (SMARCC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
Chromo
BRCT_2
DUF919
SpeFL
Motif
Other DBs
NCBI-GeneID:
420378
NCBI-ProteinID:
XP_015136656
CGNC:
3752
Ensembl:
ENSGALG00000032642
LinkDB
All DBs
Position
2:830791..898316
Genome browser
AA seq
1102 aa
AA seq
DB search
MAAAVAAGGGSGPGAAAAAAVGVGGGGPGLAALSVARRKDGGPTGKFWESPETVSQLDSV
RVWLGKHYKKYVQADAPTNKTLAGLVVQLLQFQEDAFGKHITNPAFTKLPAKCFMDFKAG
GTLCHILGAAYKYKNEQGWRRFDLQNPSRMDRNVEMFMNIEKTLVQNNCLSRPTIYLIPD
IELKLANKLKDIVKRHQGTVTEEKSKATHHVYPSPTSMDDDEWLRPVMKKDKQVLVHWGF
FPDSYDTWVHANEIDAEIEDPPIPEKPWKVHAKWILDTDIFNEWMNEEDYEVDENRKSVS
FRQRISMKNEEPVRSPERRDRKAAASTRKRKHSPSPPPTPVESRKKSGKKGQATIYGKRR
GQKEEDEQEDLTKDMEDPTPVPNIEEVVLPKNVNPKKDSENTPVKGGTVADLDEQDEETV
ATGGKEDEDPNKGDQSRSIDPGEDNVTEQTNHIIIPSYASWFDYNCIHVIERRALPEFFN
GKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLTGDVCAVMRVHAFLEQWGLIN
YQVDPESRPMAMGPPPTPHFNVLADTPSGLMPLHIRTPQIPAAQQMLSFPEKNKEKPTDL
QNFGLRTDIYSKKTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDE
CILHFLRLPIEDPYLENSDASLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVASAAAK
AALEEFSRVREEVPLELVEAHVKKVQEAARASGKVDPTYGLESSCIAGTGPDEPEKMDGA
EEEKMETETDGQQPEKVESKAESEIEEGEKVQEGENERNPEKEQESEATADTKPEEKEAE
ENKENVDASKDKEMEAGKKKVEHEISEGNVATAAAAALASAATKAKHLAAVEERKIKSLV
ALLVETQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLTERQNFHMEQLKYAELRARQ
QMEQQHSQNAQQPHQHSGPGLNPLGTAAHQGLLPHQQPPPYPMMHHQMPPPHPPQPGQMP
GPGSMLPTQPMPGRMLPGVSANLHPTGAPAPPGMAPMAGGLIGPRVPLAAPNGMYPPAAQ
PPPPAEGVTPPPPGAPPAAAAP
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcggtggcagcgggcggggggagcgggcccggggccgccgcggcggcggcc
gtgggggtcggcgggggaggcccgggcctggccgcgctgtcggtggcgaggcggaaggac
ggcggcccgacggggaagttctgggagagccccgagacggtgtctcagctcgactcggtc
cgcgtgtggctcggcaagcactacaaaaagtacgtgcaagcagatgctcctaccaacaaa
acgctggctgggctggtggtgcagctgctgcagttccaggaagatgcctttgggaaacac
atcaccaatcctgccttcaccaagctcccggcaaagtgcttcatggatttcaaagctgga
ggtacattatgtcacattcttggtgctgcttacaaatataagaatgaacagggctggcgg
aggtttgacctgcagaacccatcccggatggaccgaaacgtggagatgttcatgaacatt
gagaagacactagtgcagaacaactgtctgagcagaccaaccatctacctcattccagac
atagagctgaagctggctaataaactgaaggatattgtcaaacgccaccagggaacagta
actgaggagaaatccaaggccacccaccacgtgtatccaagtcctacctcaatggatgat
gatgaatggttgagacctgtgatgaaaaaagacaagcaggtgctggtgcactggggcttc
tttccagacagctatgacacttgggttcatgccaacgaaatagatgctgaaattgaggat
cctccaattcctgaaaagccatggaaggttcatgccaagtggattttggacacagatata
ttcaacgaatggatgaacgaagaggattacgaggtggatgagaacaggaaatccgtgagt
tttcggcagaggatctccatgaagaatgaagagcccgtgcgtagtcctgagaggagagac
agaaaagcagcagcaagcacacggaagagaaagcattctccttctccaccccccactcct
gtggagtcgaggaaaaaatcagggaagaaaggacaagcaaccatatatgggaaaaggaga
gggcagaaggaagaagatgagcaagaagatcttacgaaggacatggaggatcccacacca
gtacctaacatagaagaagtggtacttcccaaaaatgtgaacccaaagaaggacagtgag
aacacgcctgtgaaaggaggaacagtggcagaccttgatgaacaggatgaggagacagtg
gcgactggaggaaaggaggatgaagatcctaacaaaggcgaccagagtcgatcgattgat
ccgggtgaagataacgtcacagaacaaaccaaccacatcatcattcccagctatgcatcg
tggtttgactacaactgcattcatgtgattgagcgccgcgctcttccagagtttttcaat
gggaagaacaagtccaagactcctgaaatatacctggcttaccgcaacttcatgatcgac
acctatcgcctcaacccccaggagtacctgaccagcactgcctgcaggaggaacctgact
ggagatgtgtgtgctgtcatgagagtgcatgcttttctggagcagtggggtctcatcaac
taccaggtggacccggagagccgccccatggccatgggccctcctcccacccctcacttc
aatgtgctcgccgatacgccctctggcctcatgcctctgcacatccgcaccccacagatc
ccagctgctcagcagatgctgagttttcctgagaaaaacaaagagaaacccactgacctg
cagaacttcggacttcgcacagacatttactcaaaaaagactttagcaaagagtaaaggt
gcgagtgctggaagagaatggacggagcaggagacgctgctgctgttagaagccctggag
atgtacaaggacgactggaacaaggtctcggagcacgttggcagccgcacccaggatgag
tgcatcctccatttcctgcggctccccattgaggacccctacctggagaactcggacgcg
tccctcggccccctggcctaccagcctgtgcccttcagccagtctggcaaccccgtgatg
agcactgttgctttcctggcgtcggtggtggacccccgcgtggcatcagcagcagcaaag
gctgccttagaggaattctcccgggtcagagaggaggtgcccctggagctggtggaagcc
cacgtcaagaaagtgcaggaagcagcgcgtgcctcagggaaggtggatcccacgtatggg
ctggagagcagctgcattgctgggacggggccggacgagccagaaaagatggatggagcc
gaagaagaaaaaatggaaacagagacagatgggcagcagcctgagaaggttgaaagcaaa
gcagagagtgaaattgaggaaggtgaaaaagtacaagaaggagaaaatgagaggaatcca
gaaaaggaacaagaaagcgaagcgactgcagacaccaaaccagaagaaaaggaggcagaa
gagaacaaggagaacgttgatgcaagcaaagacaaagaaatggaggctgggaagaagaaa
gtggaacacgagatctcggaaggaaacgtagctacagctgcagctgctgctctcgcctca
gctgccaccaaagcaaagcacctagcagcagtggaagaaagaaaaatcaagtccctggtt
gctctcctggtggaaacgcagatgaagaagctggagataaagcttcgccatttcgaggag
ctggaaaccattatggaccgagagaaggaggcattggagcagcagaggcagcagctgctg
acggagcgccagaacttccacatggagcagctgaagtacgctgagctccgcgcccggcag
caaatggagcagcagcacagccagaacgctcagcagccccaccagcactccgggcctggg
ctgaaccctctgggcacggcggctcaccagggcctcctgccccaccagcagcccccgccg
taccccatgatgcaccaccagatgcctccaccccaccccccccagccaggtcagatgccc
gggcccggctccatgctgcccacacagcccatgccgggccggatgctgccaggagtgtcg
gccaaccttcaccccacaggtgctcccgctccacccggcatggcacccatggccggcggc
ctcattgggccccgcgtccctctggcagcgcccaatggcatgtatccccccgctgcgcag
ccgcctccgcctgcagaaggggtgaccccccctccccccggagccccgccggccgcggcc
gccccataa
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