Gallus gallus (chicken): 420694
Help
Entry
420694 CDS
T01006
Symbol
TOPBP1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
gga
Gallus gallus (chicken)
Pathway
gga03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gga00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
420694 (TOPBP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gga03032
]
420694 (TOPBP1)
03400 DNA repair and recombination proteins [BR:
gga03400
]
420694 (TOPBP1)
DNA replication proteins [BR:
gga03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
420694 (TOPBP1)
DNA repair and recombination proteins [BR:
gga03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
420694 (TOPBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
BRCT_TopB1_SLF1
ECT2_BRCT0
Vps52_CC
Motif
Other DBs
NCBI-GeneID:
420694
NCBI-ProteinID:
XP_015137235
CGNC:
8911
Ensembl:
ENSGALG00000034461
UniProt:
A0A1D5P3M9
Structure
PDB
PDBj
LinkDB
All DBs
Position
2:complement(42590898..42614146)
Genome browser
AA seq
1519 aa
AA seq
DB search
MKGSKEVFLVKFVKSSGSSEYFLKALESIKEFQSEEHLQILEEEAALNIKENDKSLYICD
PFTGVVFNHLKKLGCRIVGPQVVLYCMQSQRCVPRAEYPVYNMTMADVTISCTTLDKDVR
EEVHKYVQMMGGRVYRDLNMSVTHLIAGEVGSKKYLVAASLKKPVLLPSWVKTLWDKSQQ
RMMRYTDVNMEDYACPVFLGCTICVTGLSSSDRKEVQRLTAEHGGQYSGQLKMNECTHLI
VQEPKGQKYECAKKWNVHCVPVQWFSDSIEKGFCQDETMYKIESGSKLSSTPSTSTPTSH
ASKLDTHSLSDVSCISNVNLSRVNETACSSAMSSRLDPPPDELENLDISSFQAPEDLLDG
CRVYLCGFSGRKLDKMRRLINCGGGVRFNQLNEDVTHVILGENSDELKHFLDKTLHRPHI
VTAKWLLESFNKGYLCPVEQYIPQNYQLLANTILEQPDAKLVLPKNNSMSKKKAVNVVKL
QKAAEDDFLSQYVSNDSTLVEAEKLASGSFNDVTHVTVQEENHSSVCNGSLGEPSALDEG
LFARKRFLLLGFGEEDESCIADLIKEHAGKTVPLQSRIIADYAVVPLLGCSVESTVGDVV
TNTWLVTCVEQQLLLDPQSNPLFTPVPVMEGVTPLVDCVLSFSQFTGAERDSLVYLAGLL
GARVQEFFVRKANAKKGMFASTHLVVKEPDGSKYEAAKKWNLPAVTVAWLLQSARTGKRA
DESKFLVEHADAEDESSITKLSKTPPTTKFPDSPERPTYLREAGKKPAVTPLDINRFQSK
AFQAVISHHIGKATTSPPPRGLLQKEPSLHLDTPSKFLSKDKLFKPSFDVKDALAALETP
GGLGQKNRKLSTPLSEVIGRNLKLALANSTRNTEALTASPQLKAAQPEVEEEPKPLAGVV
ICVSKKLTKKQSELNAIAASLGADYRWCFDETVTHFIYKGGQNDSNKEYRSVKERGIHIV
SEHWLLECAQEYKRLPESLFPHTYNPKMSLDISAVQDFRPSSSSELPPTGKPAEENEIIA
VDEDDAEDDLTTDQIKETAGTGEEHNGISESKGVLTQALEMRENFQRQLQEIMSATSIVK
PQGQRGSLSRNSFDSSPATPDSARSVRNGRSRALEALRQSRQAFTDINTEPSQSEQIIWD
DPTAREERARLVSNFQWPNSPSQYTEQAQSNVNRNTDESTFKGSIADAEIAGIVVPEAGD
GDTIEGLKNPVCRDPETPIKDHLIPTPQAPSIAFPLANPPVAPQPKEKAVTEDEKVDEEP
EKCRKFQLSSLNPQERFDYCHLIEELGGIVLEKQCFDPSCTHIVVGHPLRNEKFLASMAA
GKWVLHRSYLEACRGAGCFVQEEDYEWGSDSILNVLPGINVNQKKLALAAMRWRKRIHKG
RQETGITEGAFSGWKVILNVDHTKEAGFRRLLQSGGAKVFSGHSVSFFKEATHLFADFSK
LKPDDTRVNIAEAAEQGVNCLKPEYIADFLIQDPPPPMESYCLPEAERCFQNNKERGTGL
SQKRKAPGEMSRVKRSRMH
NT seq
4560 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggcagcaaggaggtgttcttggtgaaattcgtaaaatcttctgggagctcggag
tatttcttgaaagctttggagtctataaaagaatttcagtcagaagaacatctccagatt
cttgaagaagaagcagcactcaatataaaagaaaatgataaatccctttacatctgtgat
ccttttacaggtgttgttttcaatcatctcaaaaagcttggttgtagaattgttggacca
caggtagtcctgtactgcatgcagtcccagagatgtgtcccaagagctgagtatcctgtg
tacaacatgaccatggctgatgtaacgatatcgtgtaccaccttagataaagatgttcgg
gaggaagttcataagtatgtacagatgatgggtggacgtgtgtacagagacctcaacatg
tcagtaactcatcttatagctggagaagttggcagcaagaaatacttagtagctgcttct
ctgaaaaaacctgttttgcttccttcttgggttaagacgctatgggataaatctcagcaa
agaatgatgagatacactgatgttaacatggaagactacgcttgtcctgtgtttcttggc
tgtaccatttgcgtaactggcttaagtagttcagacaggaaagaagtccagcgcctcacg
gctgaacatggtgggcagtattcagggcagctcaagatgaatgaatgtactcacctcata
gttcaagagccaaaaggtcagaaatacgaatgtgccaaaaaatggaatgtccactgcgtg
cctgtgcagtggttttctgacagcattgagaagggcttctgtcaagatgagacaatgtat
aaaatagagagtggatcaaaactaagtagcacacccagtacctcaacacccaccagccac
gccagcaagcttgacactcattccctttcggatgtcagctgcatttccaatgtaaatttg
agtagagttaatgaaactgcttgtagttctgcaatgagcagcagactggatcctcctcct
gatgagttggaaaacttggacataagctcttttcaagctcctgaagatctattagatggc
tgtcgggtctatctgtgtggcttcagtggcaggaagctggacaagatgagaaggcttatt
aactgtggtggtggtgttcgatttaatcagcttaatgaagatgttacccacgtcattctg
ggggaaaacagtgacgaactgaaacactttttggacaagacgcttcacaggcctcatata
gtgacagcaaaatggctactggagtcatttaataaaggctatctctgtccagtggagcag
tatatccctcaaaactaccagctgttagcgaatacaattttggaacaacccgatgcaaag
ttagttcttcccaaaaacaacagcatgtcgaagaagaaagctgtaaatgttgtgaagctc
cagaaagctgcagaagacgacttcctctctcagtatgtcagtaatgattctacattagtt
gaagctgagaaactagcatctggtagcttcaatgatgttactcatgtgactgttcaagaa
gagaatcattcttctgtctgtaatggttctttgggagagccttctgcactggatgaaggt
ttatttgccaggaagagatttcttcttttgggttttggagaagaagatgagtcctgcatt
gcagatctgattaaggagcatgctgggaaaactgtgccgctgcaaagcagaatcattgca
gactatgctgtggtacctttattggggtgctctgtggagtcaactgttggtgatgttgtc
acgaatacatggctggtaacgtgtgtggaacagcagctcctcttagatccccagtccaat
ccacttttcacaccagtcccagtaatggaaggagttactcctttggtggactgtgttctt
tcttttagccaatttactggtgcagagagagactccctggtttatctggcaggacttcta
ggagcaagagtccaggaattcttcgtgagaaaagccaatgcaaaaaaaggaatgtttgca
agtacccatcttgtggtgaaagagccggatggttccaagtatgaggctgcaaagaagtgg
aatttgcctgcggtcactgtagcttggcttttgcagtctgcaaggacaggaaagagagca
gatgaaagcaagtttttggttgaacatgcagatgctgaagatgagagttccattactaaa
cttagcaagacaccaccaactactaaatttcctgattctccagagcgacctacttatctc
cgcgaagctggaaaaaaaccagccgtcacccctcttgatatcaacaggtttcagagtaaa
gctttccaagctgtaatctctcatcatattgggaaggcaacaacttctcctccaccaaga
gggctgctacaaaaagaaccatctttacaccttgatacaccatcaaaatttctttccaaa
gacaagttgttcaagccttcttttgatgtaaaggatgctctggcagctttggaaactcca
ggaggtcttggtcaaaagaacaggaagctgagcacacctctttctgaagtcattggcaga
aacctgaaattggcactggcaaacagcactcggaatacagaagctcttactgccagccct
cagctgaaggctgcacagccagaagtggaagaagagcccaagcctctagctggtgttgtt
atatgtgttagtaaaaaacttactaagaagcaaagtgaactgaacgctatagcagcttct
cttggtgcagactacagatggtgttttgatgaaacagtaacacacttcatctacaaggga
ggacaaaacgacagcaacaaggaatatagatctgttaaagaacgaggaatacatattgtt
tcagaacactggcttttagagtgtgcccaagaatataaacggcttcctgaatctctcttt
cctcacacttacaatcccaaaatgagcctggacatcagcgcggtgcaagatttcaggccc
tcctcttccagtgagcttccacccactggaaaaccagcagaagaaaatgagattattgca
gttgatgaagacgatgctgaagatgatttaactactgatcaaataaaggaaacagctggc
acaggggaagagcacaatggaataagtgaatccaagggagttttaacccaggcgctagaa
atgagggagaacttccagaggcagctgcaggaaatcatgtctgcgacatcaatagtgaaa
ccacaaggacaaagaggatccctgtcaaggaacagttttgatagttctccagccactcct
gatagcgcccggtctgtgcgaaatggccgcagcagagccttggaagctctaaggcaatct
cgtcaggctttcacagatatcaacacggagccatcccagagtgagcagatcatctgggat
gatcctacagcaagagaggaaagagcaagacttgtcagcaacttccagtggcctaacagt
ccttcccagtacacagagcaagctcagagtaacgtcaataggaacacggatgagtctacc
ttcaaaggatccatagctgatgcagagattgctggtatagttgttcctgaggctggggat
ggagatacgattgaaggtctgaagaatcctgtatgtagagatcctgaaacacccattaaa
gatcacttgatccccactccacaggctcccagcattgcattcccactggctaaccctcct
gtggcaccacagcccaaagaaaaggctgttacagaagatgagaaggtagatgaagaacca
gaaaaatgccgtaaatttcagctgtcttctcttaatcctcaagaaagatttgactactgc
catctgattgaggaattaggtggaatagtacttgagaaacagtgctttgatccaagttgc
acacacattgttgtgggacatcctcttcgaaatgagaaattcctggcctcgatggcagct
ggaaagtgggtgcttcatcgttcctacctggaggcatgcagaggagctggctgctttgtt
caggaagaagattatgagtggggaagtgattccatacttaatgttttgcctggaatcaat
gtaaaccagaagaagctagcgctcgcagccatgaggtggaggaaaagaattcataaagga
aggcaagaaactggaattactgagggagccttcagtggctggaaggtgatcctgaatgtt
gatcacaccaaggaagcaggattccgacgccttcttcagtcaggaggagcaaaagtgttt
tctggtcattctgtgtctttcttcaaagaagcgactcatctcttcgctgacttcagtaag
ctgaagccagatgacaccagggtgaacatagcagaggcggcagagcagggagtgaactgc
ttgaagccagagtacattgcagacttcctcatccaggatccacctcccccaatggagtct
tactgcctgccagaagctgagcgttgcttccagaacaacaaagaacgtgggactggatta
tcccagaaaagaaaagcaccgggagaaatgagcagagtcaagcgatccagaatgcactga
DBGET
integrated database retrieval system
