Gallus gallus (chicken): 421171
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Entry
421171 CDS
T01006
Symbol
SKIV2L
Name
(RefSeq) helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
gga
Gallus gallus (chicken)
Pathway
gga03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gga00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
421171 (SKIV2L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gga03019
]
421171 (SKIV2L)
Enzymes [BR:
gga01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
421171 (SKIV2L)
Messenger RNA biogenesis [BR:
gga03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
421171 (SKIV2L)
mRNA degradation factors
3'-5' decay
Ski complex
421171 (SKIV2L)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
MTR4_beta-barrel
Ski2_N
DEXQc_Suv3
Helicase_C
MTR4-like_stalk
ResIII
Motif
Other DBs
NCBI-GeneID:
421171
NCBI-ProteinID:
XP_040508697
CGNC:
66175
UniProt:
A0A8V0ZZI7
LinkDB
All DBs
Position
26:536532..547318
Genome browser
AA seq
1239 aa
AA seq
DB search
MELERIVLPPPGPLHLPLALLELGCAGRCELLPGPAPPRSTLPQGLPPFTPPLTAELEQC
FLGTPAWLPPHQHERAQRCWTRVPTPRALFVLEPTPVHSSVRALRDPGTGALQGFVEELH
EDSGLASSPDVSSIPQWEGGLEEPPLELLHTQGPNEEDLDLENDLLTTPPGLKRGVEFQP
RAPGARGGAPSLCSVLGALDSLELGGAEEEQKKEGEGAGGGTPSQPPPDKGGAPSPTPPL
RRADSLEELVMGEVLVPPTTATPSVPPQSEEEEWAVEEDCSVPVEDFEEKIPDPAFKWPF
RPDAFQQRAALCLERGQSLLVAAHTSAGKTAVAEYAIALARRHMTRAIYTSPIKALSNQK
FRDFRATFGDVGLLTGDVQLRTDASCLIMTTEILRSMLYNGSEVLRELEWVIFDEVHYIN
DAERGVVWEETLILLPEHVGLVLLSATIPNALEFAQWVGRTKRRCLRVLSTRQRPVPLEH
FLYTGGGGPPSPRDLFLLLDARGGFNTQGYYAAVEAQKQRASKHTQSFGAKQPHGGGSGP
GQDRAMWHSLVALLQAQGQLPAVAFTFSRGRCDAHAAALGRTDLSSAAEKGRVRGFVRRC
LARLRGGDRRLPQVLQMSELLERGIGVHHSGVLPLLKEVVEMLFSQGLVKLLFATETFAM
GVNMPARTVIFDSIRKHDGNNFRDLLPGEYVQMSGRAGRRGLDRTGTVIILCRGTVPDMA
DLHRVMLGRPSGLQSQFRLTYGTILSLQRAAALTVEGLMRNSFGEFPLRRRAAAQQRRVA
ELQQELKALGEPPQEGTLDDLPQYYEAVQGLLEARAELQRRVAQSVAGLKALAPGRVVVV
CTPQHHNALGLILQVTAESGGGRTITTMVLSEKPTEEGGPPPSPPPDAPYPEDILLSRLF
LPEGPPGAALEQLHPEDLGGIVGRTLRANPPRLLEELRRRQTARGRKDPPSPELLSALQE
LLRMAGGAPGGLPLLDPVGALQLRDPPAVEAAARARSLGAALGGFRCVHGPRFPQLYSQF
AARRRLQAQVEQLQYELSDRSLLLLPEYRQRLGVLRALGYVADGGAVQLPGRVAALLSCH
ELLLTELLLGNVLSPLRPEEVAALLSCTVHPGRGEPPPKLPPNLQRGMEQIRAVAERVGR
LQEEWGLPQSAEDYVGQFGFGLAEVVYEWARGMPFAALAALAPLQEGAVVRCIQRLEELC
RELRRAARMLGDPGLAATMEAASGCIKRDIVFAASLYIQ
NT seq
3720 nt
NT seq
+upstream
nt +downstream
nt
atggagctggagaggatcgtgctgcccccccccgggcccctgcacctccccctggcactg
ttggaattgggctgcgccgggcgctgcgaactgctgccgggtcccgcccccccccgcagc
acgcttccccagggcctcccgcccttcactcctcccctgacagcggagttggagcagtgc
ttcctggggacccctgcctggctgcccccccaccagcatgagcgagctcagaggtgctgg
acgcgggtgcccaccccccgggcactgtttgtgttggagccaaccccggtgcacagcagt
gtgcgggcgctgcgggaccccggcacgggagcactgcagggctttgtcgaggagctgcat
gaggactcagggctcgcatcttccccagacgtcagcagcatcccccaatgggaaggtggt
ttggaggaacctcccctggagttgctccacacccaggggccaaatgaagaggatttggac
cttgaaaatgatttgctgaccaccccccccgggctgaaacgtggtgttgagttccagccc
agagcccccggagcccgggggggggcaccatcactctgtagcgttttgggggcattggat
tccttggagttggggggggcagaagaagagcagaaaaaagagggggagggtgctgggggg
ggtaccccctctcagcccccccctgacaaaggaggggcgccttcccccacaccccccctg
cgccgtgcagacagcctggaggagctggtgatgggggaggtgctggtgccccccaccaca
gccaccccttctgtgcccccccaaagtgaggaggaggagtgggcggtggaggaggactgc
agcgtccccgtggaggactttgaggagaagatcccagatccagcattcaagtggccgttc
cgccccgatgcgttccagcagcgcgcggcgctgtgcctggagcgggggcagtcactgctg
gtggctgcgcacacctctgccggcaaaaccgccgtggctgaatacgccatcgcgttggca
cggcgacacatgacacgggccatctacacgtcacccatcaaagcgctctccaatcagaag
ttccgtgacttcagggccacctttggggatgtggggctgctgacgggggatgtgcagctg
cgcaccgacgcctcctgcctcatcatgaccaccgagatcctgcgctcgatgctgtacaac
ggctccgaggtgcttcgtgagttggagtgggtcatcttcgacgaggtgcactacatcaac
gatgccgagcgcggcgtggtgtgggaggagacgctgatcctgctgcctgagcacgtgggg
ctggtgctgctcagtgccaccatccccaatgccctcgagttcgcccagtgggtcggccgc
acaaagcggcgctgcctgcgggtgctgagcacacggcagcgcccggtgcccctcgagcac
tttctctacactgggggcggcggtccgccctcaccccgtgacctcttcctgctgctggat
gcacggggtggcttcaacacccaggggtactatgcagcggtggaggcacagaagcagcgg
gcgagcaaacacacacagagctttggggccaaacagccccacggggggggcagcggcccc
gggcaggaccgtgccatgtggcactcgctggtggcactgctgcaggcgcaggggcagctc
ccggccgtggccttcaccttctcccgcgggcgctgcgatgcccacgcggccgccctgggc
cgcaccgacctcagctcagccgccgagaagggccgcgtgcggggcttcgtgcggcgctgc
ctggcccggctccgggggggggaccgccgcctgccccaggtgctgcagatgtcggagctc
ctggagcgcggcatcggggtgcaccacagcggggtgctgccactgctcaaggaggtggtg
gagatgctcttcagccaggggctggtcaagctgctctttgccaccgagaccttcgccatg
ggggtgaacatgccggcgcgcaccgtcatcttcgactccatccgcaaacacgacggcaac
aacttccgcgacctgctgccaggtgagtacgtgcagatgtcggggcgcgccgggcgccgc
gggttggaccgcaccgggactgtcatcatcctgtgccgggggacggtgcccgacatggcc
gacctgcaccgcgtcatgctgggccgcccgtcggggctgcagtcgcagttccgcctgacg
tacggaaccatcctcagcctgcagcgcgcggccgcgctcaccgtggaggggttgatgcgc
aacagcttcggagagttccccctgcggcgccgcgctgcggcacagcagcggcgcgtggct
gagctgcagcaggagctgaaagcgctgggagagcccccgcaggaggggacgctggatgac
ctcccccagtactacgaggccgtgcaggggctgctggaggcgcgggcagagctgcagcgt
cgcgtggcgcagtcggtggcagggctgaaggcgttggcccccgggcgggtggtggtggtc
tgcacccctcagcaccacaatgcgctggggctcatcctgcaggtgactgctgaaagcggg
ggggggcgcaccatcacaacaatggtgctgagtgagaaacccacagaggaaggggggccg
cctccttcgccccccccggacgccccctaccctgaggacattctgctgagccggctcttc
ctgcctgagggcccccctggagcggcgctggagcagctgcaccccgaggacctggggggc
attgtggggcgcacactgcgggcaaaccccccccggctgctggaggagctgcggcggagg
cagacggcacggggaaggaaggacccccccagccccgagctgctctcagccctgcaggag
ctgctgcgcatggcggggggggccccgggggggctgcccctgctggacccagtgggggca
ctgcagctgcgggacccccctgccgtggaggcggccgcccgcgcccggagcctgggggca
gccctgggggggtttcgctgtgtgcacggcccccgctttcctcagctgtactcgcagttc
gctgcccggcgccgcctgcaggcacaggtggagcagctccagtacgaactgtcggaccgc
tccctgctgctgctgcccgagtaccgccagcgcctcggcgtgctgcgggctctgggctac
gtggccgacgggggtgcggtgcagctccccgggcgtgtggcggcactgctgagctgccac
gagctgctgctgacggagctgctgctgggcaacgtgctgagcccgctgcgccccgaggag
gtggccgcgctgctgtcctgcacagtgcacccaggccggggcgagccgccccccaaactg
cctcccaacctgcagcggggcatggagcagatccgcgccgtggcggagcgcgtggggcgg
ctgcaggaggagtgggggctgccgcagagcgccgaggactacgtggggcagttcggcttc
gggctggcagaggtcgtgtacgagtgggcacgcggcatgcccttcgccgctctggcagcc
ctggcgccgctgcaggagggcgcggtggttcgctgcatccaacgcctggaggagctgtgc
cgggagctgcgccgcgccgcgcggatgttgggcgacccggggctggcggccaccatggag
gcggcgagcggctgcatcaaacgggacatcgtcttcgccgcgagtctctacatccaataa
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