Gallus gallus (chicken): 421291
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Entry
421291 CDS
T01006
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
gga
Gallus gallus (chicken)
Pathway
gga03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gga00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
421291 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gga03400
]
421291 (MSH6)
DNA repair and recombination proteins [BR:
gga03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
421291 (MSH6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
421291
NCBI-ProteinID:
XP_015133604
CGNC:
6804
Ensembl:
ENSGALG00000008957
UniProt:
A0A8V0ZA96
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All DBs
Position
3:9383058..9394161
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AA seq
1341 aa
AA seq
DB search
MSRQSTLLRFFPKAQQPRAAATPPPAGGENRCRSSREQNGLEAASRPAERSKENGKADGA
AATGRGVSGVYSPGDLVWAKMEGYPWWPCLIYNHPTEGTIVRGKGSSARIHVQFFDVSPT
RGWVSIKYLRPYKGSSDREVLKGGMFYSMKPEIKKAMELADDAMSKDKTKRLELAVCSEP
SDTEEAEEEEMEMSGSASGDSDDSNSEEDVKGNKRVPNRGSAIKAKRRRVLDSDSDRDGS
DVEFKPDVKEASSEEASSGVDENEATDVETDEESIEESPIKVPSKRKRGNVSKPSKRSSL
ENEHSEAPKRAAPVSLEAKSKLTLFAAPENFESQANACSGGTNGFAAWEHEKLEWLQEGK
KKDAHRRRQNHPDYDPCTLYVPEDYLNKCTPGMRRWWQLKSQNFDAVICYKVGKFYELYH
MDAVTGVNELGLIFMKGSWAHSGFPETAFGRFSAILVQKGYKIARVEQTETPEMMEARCK
ATAHTTKFDKVVRREICRIITKGTQTYSIIDCDPTENHNKYLLCVKEKEDSSGQRVYGVC
FVDTSVGKFYVGQFSDDRHCSRFRTLVAHYTPVQVLFEKGNLTVDTQKILKGSLISCIQE
GLISGSQFWSASKTLKVLLEEEYFKENQNTESGCVLPSVIKSLTSESDSLGLTPGENSEL
ALSALGGIVFYLKKCLIDQELLSLANFEKYIPVDADNAKTVSSSNFFARTDRRMVLDGVT
LMNLEVLQNGTNGTTEGTLLERIDSCCTPFGKRLLKQWLCAPLCNPTSINDRLDAVEDLL
AVPAKLTEITEHLKKLPDLERLLSKIHSIGSPLKSQNHPDSRAIFYEEIKYSKKKIADFL
SALEGFKVMNEIVDAMEEVASDFKSQVLKQLVTRKAKHPDGRFPDLSAELKRWDTAFDHN
QARKTGVITPKAGFDPDYDKALQDIKTVEEDFRTYLDKQRKLLGLKSVLYWGTGKNRYQM
EIPETATSRNLPEEYELKSTRKGYKRYWTKEIEKMLAELINAEERRDAALKDCMRRLFYN
FDKNSQDWQTAVQCIAVLDVLMSLANYSQDGDGPLCRPVILLPVDSAPPFLELKNARHPC
ITKTFFGDDFIPNDIVIGSKDEDGGSEASCVLVTGPNMGGKSTLMRQAGLLVIMAQLGCY
VPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETSSILQHATEHSLVLVDELGRGT
ATFDGTAIASAVVRELAENIKCRTLFSTHYHSLVEDYSGSAAVRLGHMACMVENESEDPS
QETITFLYKFIEGACPKSYGFNAARLADIPEEIIQKGHRKAKEFEKKTMSLRIFRFLCRV
VDGVTHDANAVGKLTTMLSHL
NT seq
4026 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgtcagagcaccctgctccgcttcttccccaaggcccagcagccgcgggccgcc
gctactcctcctcccgccggcggggagaaccgctgccgctcttccagagagcagaatggc
cttgaggccgcctccaggcccgcggagcgcagcaaggagaatggcaaagcggatggggcg
gccgccacaggccgcggtgtctccggtgtttattctcccggggacttggtctgggccaag
atggaaggctatccctggtggccgtgcctcatctacaaccaccccacggagggaaccatt
gtcagagggaaagggagctctgctcggatccatgtgcagttctttgatgtcagtcccacg
aggggctgggtcagcatcaagtacctgagaccgtacaaaggctcatcagacagagaggtg
ctgaagggaggtatgttttatagtatgaagcctgaaattaaaaaagcaatggagctggca
gatgatgcgatgagtaaagataaaactaagcgacttgagctggcagtgtgcagcgaacct
tcagacactgaggaggcagaggaggaggaaatggagatgagtggaagtgcatcaggtgac
agtgatgacagcaatagtgaggaggatgtgaagggcaataagcgagtaccaaacagagga
agtgccataaaagccaaaagaagaagagtgctggattcagacagtgatcgtgatggttct
gatgtagagttcaagcctgatgtgaaagaagcaagcagcgaggaagctagtagtggggtg
gatgaaaatgaagctactgatgtagagacagatgaagagagcattgaagaaagtcctata
aaagttccttccaaacggaagaggggaaatgttagcaagccttctaaaaggagtagctta
gaaaatgaacattctgaagcacccaaaagagcagcaccagtttcgttagaagccaagtct
aagctgacgttgtttgcagcccctgaaaattttgagtctcaggcaaatgcttgcagtgga
ggcactaatggctttgcagcatgggaacatgaaaagcttgagtggctgcaggaagggaaa
aagaaagacgcgcacaggagacgacagaaccaccctgactatgacccatgtactttgtac
gtaccggaggactaccttaacaaatgtacgcctggaatgcggaggtggtggcagctgaaa
agtcaaaactttgatgcagtgatttgctacaaagttggaaaattctatgagttgtatcac
atggatgcagtcactggtgtgaatgagctgggcctgatatttatgaaaggttcatgggct
cattctggttttccagagactgcgtttggcagattctctgctattctggttcagaagggc
tacaagatagcccgtgttgagcaaacagaaactcctgaaatgatggaagcacgctgcaag
gcaacggcccacacaaccaagtttgacaaggttgtacgtcgggaaatctgcagaatcatt
accaaaggcactcagacttacagcattatagactgtgatccgacggagaaccataacaaa
tacctcctgtgcgttaaggaaaaagaagactcctctggacaacgtgtttatggggtctgt
tttgttgacacgtcagttgggaagttttatgtcggccagttctcagatgaccggcactgc
tcaaggtttaggactttagtggcgcattacacccctgtgcaggtcctgtttgagaagggg
aacctgactgtggacactcagaagatactgaaaggctcgctcatttcttgcattcaggag
gggctaatctctggctcccagttctggagtgcatctaaaacactaaaagttcttcttgaa
gaagagtatttcaaggagaatcaaaacaccgagagtgggtgtgttctgccctctgtaatc
aaatctctgacttcagagagtgactcactggggttaactcctggcgaaaacagcgaatta
gctttgtcagctcttgggggaattgtcttctatctcaaaaagtgtctgattgaccaggag
ctgctatcgctggcaaactttgagaagtatatccccgtggatgctgataatgcaaaaact
gtgagttccagtaatttctttgccagaactgaccggcgcatggtgctggatggagtcact
ctgatgaacctggaagtgctgcagaatggaaccaatggaaccacggaaggtactttgttg
gagaggattgactcctgttgtacaccgtttgggaagcgcctcctgaaacagtggctttgt
gctccgctttgtaatcctacatccattaatgaccgtttagatgctgttgaggaccttctg
gcggtgccagctaaactgactgaaattactgagcatctgaagaaactccctgaccttgaa
aggctgctcagcaaaattcacagcattggatcaccgcttaaaagtcagaaccatcctgac
agcagggccatcttttatgaagaaattaaatacagcaaaaaaaaaattgccgactttttg
tctgcgctggaggggtttaaagtaatgaatgaaattgtcgatgccatggaggaagttgcc
agcgacttcaaatctcaagtccttaagcagttagtcacccgcaaagccaaacatccagat
gggcgcttcccagacttgagcgcagagcttaaaaggtgggacacggcttttgatcataac
caggctcggaagactggagtgattactccaaaggcaggttttgaccccgattacgataaa
gcactccaggatattaaaactgttgaggaagatttccgtacatacctagataagcaacgc
aaactgctcggactcaaatccgtgctgtactgggggacaggcaaaaatcgataccaaatg
gaaataccggaaaccgccacatcgcgtaatttacctgaagaatatgagttgaagtcaacc
aggaagggatacaaacgttactggaccaaggagattgagaagatgctggctgagttgatt
aatgctgaggagcgaagagatgcggctctgaaagactgtatgaggcgtttgttttacaac
ttcgacaagaacagccaagactggcagacagccgtacagtgcatcgctgtgctggatgtc
ttgatgtcccttgctaactacagtcaagatggtgatggaccactgtgccgacctgtaatt
ctactgcctgtggatagtgctcctcccttcctggaactgaaaaatgcacgccatccttgc
attacaaaaactttctttggggacgattttattcctaatgacatcgtgataggcagtaaa
gatgaagatggtggtagtgaagcttcctgtgtgctagtcactggcccaaacatgggtggc
aaatcaacactcatgagacaggctggtctcctggttataatggctcagctgggatgctac
gtgcctgctgaggtctgcaggctcacacctattgacagagtatttacacggctcggtgcc
tccgacaggatcatgtcaggtgaaagtaccttctttgttgaattaagtgagacttccagc
atcctgcagcatgcaacagagcactccctcgttctcgtggatgaactcggccgaggcaca
gctacgtttgatggaacagcgatagcgagtgcagttgttagagagcttgctgagaacatc
aagtgtcgcaccctgttctccacgcattaccactccttggtagaggactactcgggcagc
gcggccgtgcggctgggacacatggcttgtatggtggaaaatgagagtgaagatccgagc
caggaaacaattacatttctatataaattcattgaaggagcgtgtccaaaaagctatggc
ttcaatgcagcaagacttgctgacatcccagaggaaattattcagaaagggcacagaaaa
gcaaaagagtttgaaaaaaagacaatgtcactaagaatattcaggtttttgtgccgggtg
gtggatggcgtgacacacgacgcgaatgcggtagggaagctcaccactatgctcagtcac
ctttaa
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