Gallus gallus (chicken): 422350
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Entry
422350 CDS
T01006
Symbol
COL4A6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X2
KO
K06237
collagen type IV alpha
Organism
gga
Gallus gallus (chicken)
Pathway
gga04382
Cornified envelope formation
gga04510
Focal adhesion
gga04512
ECM-receptor interaction
gga04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gga00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
422350 (COL4A6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
422350 (COL4A6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
422350 (COL4A6)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
422350 (COL4A6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gga04147
]
422350 (COL4A6)
00536 Glycosaminoglycan binding proteins [BR:
gga00536
]
422350 (COL4A6)
Exosome [BR:
gga04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
422350 (COL4A6)
Glycosaminoglycan binding proteins [BR:
gga00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
422350 (COL4A6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
422350
NCBI-ProteinID:
XP_015134089
CGNC:
51716
Ensembl:
ENSGALG00000008266
UniProt:
A0A8V0YLR1
LinkDB
All DBs
Position
4:13981270..14102133
Genome browser
AA seq
1700 aa
AA seq
DB search
MGPAPGRAGALLLLLPVLLLCLRAEPASAGGKKSYSGPCGGRDCSAGCKCFPEKGARGRP
GPIGIQGPIGAPGFTGPEGLPGAKGERGAVGPPGPAGHKGNKGSMGVPGFQGINGIPGHP
GQSGPRGPPGLDGCNGTIGSPGVSGPDGFPGIPGLPGRPGPKGLKGEPVYAQGSLKGMKG
ENGLPGLDGISGPRGFPGPTGSAGPIGLPGLQGPVGPPGPPGPKGNMGLGFQGEKGEKGD
VGLPGPPGPPPSTGILEFMGFPKGKQGEKGQPGPQGLPGDKGLPGLPGFGGVGEKGEKGV
PGLPGGRGLLGLDGSNGIPGRKGHPGIPGYPGLDGVEGTKGEIGDIGPPGPPIVVDKEGV
VISGAPGDPGNPGIPGPPGDEGISGLPGFPGAPGFPGLERDGMGPGGSPGIPGVKGEMGE
PGRTTVGLPGTPGRIGLPGLPGAPGLPGSSRPSLLPDAILDGRTGAPGEPGQRGLPGALG
PKGYKGDAGDCACDGGVTRAGIKGISGPQGPPGSRGVPGIKGVSGDPGTVGAPGLRGPLA
SAGQQGLPGLKGEKGDSSYATGRGAPGDRGAAAPRGPSGFPGTPGRDGLPGLPGPPGPPG
DGGLGFPGEKGLPGLPGSKGRPGEIGSPGIGYPGPAGLRGPPGDPGMDGFPGQAGLPGPP
GITLPCVVPGAYGPPGTPGLPGLPGPKGSKGFPGIPGQPGLHGSKGQPGSPGIIGLQGEP
GFPGPRGEQGSQGLPGLDGTDGLPGKMGASGLAGTKGATGDVFGAESGAQGERGRPGLPG
DKGLAGDLGFPGPKGLDGRPGLLGIKGELGNPGYSGVPGLRGPPGPGGPFGIKGKPGPLG
SVGLAGAPGLPGVKGLSGDVGPQGPAGMKGFPGLDGAPGPPGERGFLGPPGPFGQDGRPG
FSGPKGEKGSSGLLGFPGMPGLPGVPGVNGFKGTPGAVGERGSPGVLGLQGQKGDRGDVG
PPGLPVLGAQEQALQLKGDKGDPGLAGLGGFPGPRGDKGIPGSRGQPGLPGPVGSASRER
GFHGDQGFPGPSGQPGLPGQKGTRGIIGFPGMPGERGSDGVTGTLGFPGPIGLPGPKGDQ
GESAGVPGTAGVKGERGDPGFPGERGREGLKGEPGYPGSTGVNGLKGGPGDLGPEGPAGI
PGNAGLRGISGPPGPPGQPGSVGFPGARGTAGPKGFHGFPGLNGLNGLPGTKGSPGTPGL
SEVGLKGPAGLPGLKGEEGSPGLGRGAVGFPGPKGSSGDLGPPGPVGLPGLPGTPGVSLP
SDIRGRPGDAGHPGLDGSSGLPGPPGQRGPPGPAFDQGDTGNPGFPGVPGLRGGKGDVGP
TGPIGLPGVSGFKGVRGEPGLMGMPGKDGPPGDPGYPGQKGGMGHRGLPGQPGAPGITPQ
AEEITAPAGLPGLPGIDGVPGFDGDPGFQGPVGKPGAKGLPGRSGLKGRDGLPGSPGIAG
DPGPVGAPGPQGFEGAAGKPGALGLPGMPGRSVGVGYTLVKHSQSDQIPPCPIGMNKLWD
GYSLLYVEGQEKSHNQDLGFAGSCLPRFSTMPFIYCNINEVCYYASRNDKSYWLSTTAPI
PMMPVDSNQIPQYISRCSVCEAPSQAVAVHSQDITIPQCPLGWRSLWIGYSFLMHTAAGA
EGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYFANKYSFWLTTVEQSQQFVGAPPSET
LKAGQLRTRVSRCQVCMKNL
NT seq
5103 nt
NT seq
+upstream
nt +downstream
nt
atgggcccggccccggggcgcgcaggggcgctgctgctgctgctgccggtgctgctgctg
tgcctgcgcgccgagccggcgagcgcgggtggaaagaagtcctacagtgggccatgtgga
ggacgtgactgcagtgctggatgcaaatgtttcccagagaagggtgcaaggggtcgacca
ggaccaattgggattcaaggaccaataggtgctcctggatttactggtccagagggtttg
ccaggagcaaaaggtgagagaggagcagtgggcccccctggaccagctggacacaaaggc
aacaagggttcaatgggagttccaggatttcaaggcatcaatgggattccaggtcaccct
ggccagtctggacccaggggtccacctggcctcgatggctgcaatggaaccatcgggagt
cctggtgtttctgggccagatggatttcctggcatacccgggctgccgggtcgtcctggt
ccaaaaggtcttaaaggagaacctgtttatgctcaaggcagccttaaaggaatgaaggga
gaaaatggtcttcctggattggatggtatttctggccccagaggttttccaggtccaaca
ggttctgcaggccctataggattaccaggtttgcaaggtccagtgggtccccctgggcca
ccaggtccgaaaggtaatatgggattaggctttcaaggagagaaaggagaaaaaggcgat
gtaggactgcctggccctccaggtccccctccatccactggaatactagaattcatggga
ttcccaaaggggaaacaaggagaaaagggtcagccaggccctcaaggattgcctggagac
aaaggattgcctggactgccgggctttggaggtgttggagaaaaaggagaaaaaggtgtg
cctggtttgccaggcggcaggggtcttttggggctggatggatccaatggcattccaggg
agaaagggtcatccaggtattccaggctatccaggactggatggagttgaaggcacgaag
ggtgaaataggtgacatcggtcccccaggccctcctatcgttgttgacaaggaaggtgta
gtaatttcaggtgccccaggtgaccctggaaacccaggaatacctggtcctccaggagat
gaaggaatcagcggtctaccaggctttccaggagctccagggtttccaggcctggagaga
gatggaatgggccctggagggtctccaggtattcccggtgtgaaaggtgaaatgggagaa
ccaggaagaacaacagttggattaccaggcactccaggaagaattggtttacctggtctg
ccaggagcaccaggattgcctggttcatcgcgcccttcgttgctcccagatgcaatcctg
gatggaaggactggtgccccaggggagcctggacaaagagggcttccaggagctttgggt
ccaaagggttacaaaggagatgcaggtgattgtgcttgtgatggaggagttacaagagca
ggtataaaaggcatctcaggtccacagggtccaccaggaagtcgtggtgtgcctgggatt
aaaggtgttagtggagacccaggcactgtgggcgcaccaggactgcgaggccctctggct
tcagccggccagcaaggtcttccaggccttaagggagaaaaaggcgattcatcctatgca
acgggcagaggtgctcctggggaccgtggtgcagcagcacccagaggaccatcaggcttc
ccaggaactcctggcagggatggacttccaggtttgccaggcccgccaggtccaccaggt
gatggtggactaggtttcccaggtgaaaaaggtctaccaggattacctggctccaagggt
cgtcctggagagattggttctcctggcattgggtatcccggtcctgctggacttcgtggg
ccaccaggtgacccagggatggatggttttccaggacaagcaggtctgccaggccctcca
ggtatcaccttgccctgcgtagttcctggagcatatggtcctcctgggactcccggcctt
ccagggttgccaggtcccaaaggcagcaaaggctttcctggcattccagggcagcctgga
ttacatgggtcaaaaggtcagccagggtctccaggaataattggcttgcaaggggaacct
ggcttccctggacctcgaggagagcaaggatcacaaggacttccaggattggatgggaca
gatggtttgcctgggaagatgggtgcttcaggcttagctggaactaaaggagctactgga
gatgtatttggtgctgagagtggagctcagggagagcgtggccgacctgggctcccaggg
gataaagggcttgcaggtgatcttgggtttccgggaccaaaagggctggatgggaggcca
ggcctcctaggtattaaaggcgagctgggtaatccaggatattcgggtgtccccggattg
cggggtcctcctggtcctggaggtccttttggcattaagggaaaaccaggaccactggga
tcagttggccttgcaggagcaccaggacttcctggagtcaaaggattgagcggggatgta
ggtcctcaaggccctgctggtatgaaaggcttcccaggtcttgatggtgctccaggacct
cctggggaaagaggattcttaggaccacctggaccttttggtcaagatggacgtccaggt
ttctctgggccaaaaggtgaaaagggatcttctggcctgcttggtttcccaggcatgcca
ggcctgcctggtgtccctggggtcaatgggtttaaaggaactcctggtgcagtgggagaa
agaggaagcccaggagttctgggacttcaaggtcaaaaaggtgacagaggcgatgtaggt
ccacctggtcttcctgttcttggggctcaagaacaggcgctgcaattgaaaggagacaaa
ggagaccctggattggctggacttggaggattcccaggacccagaggtgataaaggaatc
ccaggaagccgtgggcagcctggtctacctggacctgttgggtcagcaagcagagagaga
ggttttcatggtgaccaaggcttccctggtccatctggacagcctgggctgccaggacag
aagggtacacgtggaatcataggatttccaggaatgccaggagagaggggttcagatggt
gtcacaggaacacttggattcccaggacctattggcctccctggtccaaagggtgaccag
ggagagtctgctggtgttcctggcactgctggagttaaaggagagcgaggggacccagga
ttcccaggagagagagggagagaaggactcaagggtgaaccaggctacccaggaagcact
ggagtgaacgggcttaaaggtggcccaggagatcttggcccagaaggaccagcaggaatc
cctggaaatgctgggctaagaggaatctctgggccaccagggcctccagggcagccagga
tctgttggattcccaggagctcgtggaacagcaggaccaaaagggtttcatggatttcca
ggtttaaatggtctgaatggcttgccaggcacgaaagggtctcctggaacgccaggtctg
agtgaagttggactgaaaggccctgcaggtctccctggtctgaagggtgaggaaggttct
ccaggtttgggtagaggagctgtaggattcccggggccaaaaggctcatctggagacctg
ggtcccccaggtcctgtgggactgcctggcttgccaggaactcctggagtttctcttcct
tctgatatacgtgggagacctggggatgctggccatccaggacttgatgggagttcaggt
cttccaggtcctccgggacaacgagggccccctggaccagcttttgaccaaggtgacaca
ggcaatccaggtttccctggtgttcctggcttgcgaggtggtaagggcgatgtgggacca
acaggtcccattggactccctggcgtatctggattcaaaggtgtcagaggtgagcctggt
ctcatggggatgccaggtaaagatgggcctccaggggatcctggttaccctgggcagaaa
ggtggaatgggacatcgaggtctccccggccaaccaggggctccaggtataaccccacag
gcagaagaaatcacagcccctgcaggcttaccaggtctgccagggattgatggcgtccct
ggctttgatggagatcctggattccagggcccagttggaaagccaggtgcaaagggtctg
ccaggcagatctggtttgaaaggacgtgacggtttacctggatcacctggcattgctggt
gacccgggacctgtgggtgccccaggacctcagggatttgaaggtgcggctggaaagcca
ggcgcgcttggcttgccgggaatgcctggtcggagcgtgggtgtcgggtacaccttagtg
aagcacagccagtcagaccaaatcccgccttgtcccattggcatgaacaagctctgggat
ggctacagcttattgtacgtggaggggcaggaaaaatcacacaaccaggatctgggtttt
gctggctcttgtttgccccgcttcagcactatgccttttatttactgcaacatcaatgaa
gtgtgctactatgccagccgaaacgacaagtcctactggctgtccaccaccgctcccatc
cccatgatgccagtggacagcaatcagatcccacagtacatcagtcgttgctccgtgtgc
gaagcaccttcccaggctgtggctgtgcacagccaggatatcaccatcccacagtgtccc
ctcggttggcgcagcctctggataggatactccttcctaatgcacacagcagctggtgca
gagggtggaggtcagtcgcttgtctcacctggttcttgcctggaggatttccgtgctaca
cccttcattgaatgcaatggtgccaggggaacatgccactactttgcaaacaagtacagc
ttctggctgaccactgttgagcagtcacagcagtttgtcggtgctcctccctctgaaact
ctgaaagcaggacagcttcggacgagggtcagccgctgccaagtgtgcatgaagaacttg
taa
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