Gallus gallus (chicken): 422878
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Entry
422878 CDS
T01006
Symbol
HTT
Name
(RefSeq) huntingtin isoform X2
KO
K04533
huntingtin
Organism
gga
Gallus gallus (chicken)
Brite
KEGG Orthology (KO) [BR:
gga00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gga03019
]
422878 (HTT)
04131 Membrane trafficking [BR:
gga04131
]
422878 (HTT)
03029 Mitochondrial biogenesis [BR:
gga03029
]
422878 (HTT)
Messenger RNA biogenesis [BR:
gga03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
422878 (HTT)
Membrane trafficking [BR:
gga04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
422878 (HTT)
Mitochondrial biogenesis [BR:
gga03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
422878 (HTT)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
HEAT_GCN1
DUF4276
HEAT_EF3_N
Motif
Other DBs
NCBI-GeneID:
422878
NCBI-ProteinID:
XP_004936259
CGNC:
11658
Ensembl:
ENSGALG00000015635
LinkDB
All DBs
Position
4:complement(82130308..82208542)
Genome browser
AA seq
3079 aa
AA seq
DB search
MATMEKLMKAFESLRSFQQQQVPAAIPEEPTQRPKKELLTTKKDRVNHCLTICENIVAQS
LRNSPEFQKLLGIAMELFLLCSEDVESDVRMVADECLNKVIKALMDSNLPRLQLELYKEI
KKNGASRSLRAALWRFAELAHLVRPQKCRPYLVNLLPCLTRISKRPEESVQETLAAAIPK
IMAAFGNFANDNEIKVLLKAFIANLKSSSPTIRRTAAGSAVSICQHSRRTQYFYAWLLNV
LLGLLVPVEDDHPTLLILGVLLTLRYLIPLLQQQVKDTSLKGSFGVTRKETEISPSPEQL
IQVYELTLHYTQHQDHNVVTGALELLQQLFRTPPPELLHALTSLGGIAQVSVSKDESAIR
SRSGSIVELIGKILLGEEEGLEDDPETRSDVSAASFAASVKGEITSELASSSGVSTAGSV
GSSAADPTGHDIITEQPRSQHTLQSDSVDLSSCDLTSTATEGEDDDVLSRSSSQISAVQS
DPTMDLNDGTQASSPISDSSQTTTEGPDSAVTPSDSSEIVLEGAEGQYSGMQIGQLQDEE
DEAANILQDDSSESFRSSIALQQPHLLKTMSHSRQPSDSSVDRFPSKEDAVEPIDHENKP
SRVKGDIGHYTDGNSAPLVHCVRLLSASFLLTGEKGALVPDRDVRVSVKALAVSCVGAAV
ALHPESFFSKLYKMPLEAMGEDYEEQYVSDILNYIDHGDPQIRGATAILCGTIINSILLK
SRFDVEKWLVNVRSSTGNLFSLVDCIPLLQKTLKDESSVTCKLACTAVRHCIMSLCSSSY
SELGLQLIVDLLTLKNSSYWLVRTELLETLAEVDFRLVSFLEGKTDSLHRGVHHYTGLLK
IQERVLNDVVICLLGDEDPRVRHVAAASLMRLVPKLFYNCDQGQADPVVAVARDQSGVYL
KLLMHETQPPSHFAVSTITRTYRGYNMLQNPTDVTMENNLSRVVAAISHALTISTTRSLT
FGCCEALCLLSTTFPVCTWTVGWHCGVSQPSPSDDAQKGCTIGMAGMVLSLLSSTWFPLD
LSAHQDALILTGNLLAASAPKCLKNPWSAEEDSNQVAAKQEEPWPALADRTLVTLVEQLF
SHLLKVINICAHVMDDVAPGPAVKAALPSLTNPPSLSPIRRKGKEREPVEQTSVPMSPKK
GGETSPATRQTDASGPAPTSKSSSVGSFYHLPSYLKLYDVLKATHANYKVTLDLQNSNEK
FGCFLRSALDVLSQILELATLQDIGKCVEEILGYLKSCFNREPTMATVCVQQLLKTLFGT
NLASQYDGLSSNTSKAQGKAQRLGSSNLRPGLYHYCFMAPYTHFTQALADASLRNMVQAE
QEHDASGWFDVLQKVSTQLKTNITSAAKHRADKNAIHNHIRLFEPLVIKALKQYTTTTSV
QLQRQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRESEAIIPNIFFFLV
LLSYERYHSKQIIGIPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVLRGTNKADAGK
ELETQKEVVVSMLLRLIQYHQVLEMFILVLQQCHKENEDKWKRLSRQIADIILPMLAKQQ
MHIDSHDALGVLNTLFEILAPSSLRPVDMLLRSMFVTPKTMASVSTVQLWISGILAILRV
LISQSTEDIVLSRVQELSFSPYLISRQAINRLRHGENNVSAQEDHSEVKQTKYLPEETFS
RFLLQLVGILLEDIVTKQVKVDMNEQQHTFYCQELGTLLMCLIHIFKSGMFRRITAAATR
LFTGDGSDGSFYTLESLSDLVQSMVPTHPSLVLLWCQILLLVNYTNYNWWSEVHQTPKRH
SLSTTKLLSPQISGDSDESDSESKRGMCNREIVRRGALILFCDYVCQNLHDSEHLTWLIV
NHVQDLINLSHEPPVQDFISAVHRNSAASGLFIQAIQSRCENLAAPTTLKKTLQCLEGIH
LSQSGAVLTLYVDKLLCTPFRVLARMVDTLACRRVEMLLAATLQNSITQLPVEELDRIQE
YLQNSGLATRHQRLYSLLDRFRLMVAPDTTSPSPLVTSHPLDGEDQPGLENVILDKDWYM
SLVRSQCCIKSDSALLEGAELLNRIPQPDLNSFMNSKEFNLSLLAPCLSLGMNEISRDQK
SSLFEAARRVTLDHLSATVLNLPASHQVFQPLLPTEPSAYWKKLNDIFGDEVMYQSVMTL
CRALAQYLLLLSKLPTSLRVPPDKEDDILKFVVMSIEALSWHLIHDRLPISIDLQAALDC
CCLTLQQPSLWNLLASAANVTYACSLINCIKFIIEAVAVEPGNQLLSPERKKNASKGLSE
DEVDSNMHKMKHITAACEMVAEMVECLQTVLALGHHRNSSIPAFLTPVLKNIIISLARLP
LVNSYTRVPPLVWKLGWSPKPAGDFGTVFPEIPVEFLQEKEIFKEFIYRINTLGWISRTQ
FEETWATLLGVLVTQPIVMDQEENQQEEDTERTQINVLAVQAITSLVLSAMTIPVAGNPA
VSCLEQQPRNKALKALDTRFGRKLSVIRGIVEQEIQAMVSKRDNIATHHLYQAWDPVPSL
SPVSTGALISHEKLLLQINTEREIGDMDYKLGQVSIHSIWLGNNITPLREEEWGEDEEDE
NDVPVPSSPPTSPINTRKHRAGVDIHSCSQFLLELYSQWILPSSPNKRTPVILISEVVRS
LLAVSDLFTERNQFEMMYTTLTELRKVHPSEDEILIQYLIPATCKAAAVLGMDKAVAEPV
SRLLESTLRSTHMPSRIGALHGILYILECDLLDETAKQLIPIISEYLLSNLRAVAHCVTV
HNQQHILVMCAAAFYLIENYPLDVGPEFSAGIIQMCGVMVSGSDESTPSIIYHCVLRGLE
RLLLSEQLSRLDSESLVKLSVDRVNVQSPHRAMAALGLMLTCMYTGKEKVSPSRSTDANP
AAPDSESVIVAMERVSVLFDRIRKGFPFEARVVARILPQFLDDFFPPQDVMNKVIGEFLS
NQQPYPQFMATVVYKVFQTLHTTGQSSMVRDWVMLSLSNFTQRTPVAMAMWSLSCFFVSA
STSQWISAILPHIISRMGKLEQVDVNIFCLVAMDFYRHQIDEELDRRAFQSVFEVVASPG
TPYHRLLTCLQNVHKVTAC
NT seq
9240 nt
NT seq
+upstream
nt +downstream
nt
atggccaccatggagaagctgatgaaggccttcgagtcgctgcgctccttccagcagcag
caggtgccggccgccatccccgaggagcccacgcagagaccaaagaaggaacttttaact
accaagaaagatcgagtgaatcattgcctgacaatatgtgaaaacattgttgctcagtct
ttaagaaattctccagaattccagaaactgctggggattgctatggaactttttctcctc
tgcagtgaggatgtagaatctgatgtccggatggttgctgatgaatgccttaataaagtt
attaaagctttgatggattccaatctacctaggttacaattagaactgtataaggagatt
aaaaagaatggtgcttcccgaagtcttcgtgctgcgctctggagatttgctgagcttgct
catctagttcggcctcagaaatgcagaccatacttagtgaaccttttgccctgtttaaca
agaataagtaagaggcctgaagaatctgtacaagaaacattagctgcagcaataccaaaa
atcatggcagcatttggcaattttgcaaacgacaatgagattaaggtcttattgaaggct
tttatagctaatcttaagtccagttcccctactatccgtcgaacagctgcgggatcagca
gtaagcatctgtcaacattcgcgaagaacgcagtatttttatgcctggttattgaatgta
cttttaggcttgttggttcctgtagaagatgatcatcctacacttttaattctgggtgtt
ttacttacactaaggtatctcatacctttattgcaacagcaagtgaaggataccagcctg
aaaggcagttttggtgtaacaaggaaagaaacagagatttcaccttcaccagaacagctt
atacaggtttatgagttgactctgcattacactcagcatcaggaccataatgttgtgact
ggggctttggaattactacaacagctctttagaacaccgccacctgaacttctccatgcc
ttgacttctttaggtggcattgcacaggtcagtgtatccaaagatgaatctgccatcagg
agccgcagtgggagcatagtggagctcataggtaaaatacttcttggtgaagaagaaggt
ttggaagatgatcctgagacccgatcagatgtcagcgctgcatcatttgcagcttctgtg
aaaggcgagataaccagtgaactagcttcttcatcgggtgtatcaacagctgggtcagta
gggagttcagctgctgatcctaccggacacgatatcattactgaacagccacgttctcaa
catacgttgcagtcagactctgtagatctgtcaagctgtgatttgacaagtacagctact
gaaggggaagacgatgatgtgcttagtcgaagctctagccagatcagtgctgtccaatca
gatcccactatggacttgaatgatggtacacaggcttcctcaccaattagtgatagctct
cagactactactgaaggtccagactctgctgtaaccccttcggacagttctgaaattgtt
ttggagggtgctgaaggacagtattctggaatgcaaattggacagctgcaggatgaggaa
gatgaagctgcaaatattctccaggatgattcatcagagtctttcaggagttctattgct
cttcagcagcctcacctgttgaaaaccatgagccatagtaggcagccttctgatagcagc
gttgacagatttccatcaaaagaagatgcagtggaacctattgatcatgaaaataagccc
tccagggtaaaaggagacataggtcactacaccgatggaaattctgcacctttagtacac
tgtgtaagacttctgtcagcctcttttctacttactggggagaaaggagctttagttcca
gatagagatgtgagagtcagtgtaaaagccctggcagtaagttgtgttggagcagctgtt
gcccttcatcctgagtctttcttcagcaaattgtataaaatgccccttgaagcaatggga
gaagactatgaggagcagtatgtatcagatattctgaactacattgaccatggagatccc
cagattagaggagctactgctattctatgtggaacaatcatcaattctattctacttaaa
tcacgttttgatgtggagaaatggctagtaaatgtcagaagctcaacaggaaatctcttt
tccttggtagactgcatacctctattgcagaaaacactgaaagatgagtcctctgttaca
tgcaaactggcttgtacagctgtgaggcattgcatcatgagcttgtgtagtagcagttat
agtgaactaggtttacaattaattgttgacctccttacgctgaagaatagctcatactgg
ctagtgaggacagaacttctggaaacacttgcggaggtggattttcggctagtcagcttt
ttggaaggaaaaactgacagcttgcacagaggtgttcatcattatactggtctactaaaa
attcaggagagggtgctcaacgatgttgttatctgtttgcttggagatgaagatccaaga
gtacgacatgttgctgcagcttcattaatgaggcttgttccaaagctgttttataactgt
gatcaaggacaagctgatccagttgtggcagtagcaagagaccaaagcggcgtctacctg
aaactactaatgcatgaaacacagcctccatctcactttgcagtgagcactatcactaga
acatatagaggttacaatatgctgcaaaatccaacggatgtcactatggaaaacaatctt
tcaagggttgttgctgcaatttcccacgcattgacaatatccactacaagatcacttaca
tttggctgctgtgaagctttgtgtcttctctccacaacctttccagtctgcacctggact
gtgggatggcactgtggcgtttcccagccaagtccttcagatgatgctcagaagggctgc
actattggaatggccggcatggtcctctctcttctttcatcaacatggttccctttggac
ctttctgctcatcaggatgctttgattttgactggaaacttgcttgcagcgagtgctccc
aagtgtttaaagaacccttggagtgctgaagaagattcaaaccaagttgctgcaaagcag
gaggaaccgtggccagctctggcagaccgaactcttgttactttggtagaacagctcttt
tctcatctgcttaaggtcattaatatttgtgcacatgtaatggatgatgttgcccctggc
ccagcagtaaaggcagcattaccttctctcacaaacccaccttctcttagtccaattcgg
aggaaggggaaagagagggagcctgtagagcagacttctgtgccaatgagccctaaaaaa
ggtggtgaaactagtccagctactaggcaaactgatgctagtggtcctgctccaacaagt
aaatcatcttcagtaggaagcttttatcatcttccatcatatctgaagttatacgatgtc
ttgaaagcaacccatgctaactataaggttactttggatctccagaacagtaatgaaaag
tttggatgcttcttacggtctgccttagatgttctgtcgcaaatcttggaacttgcaact
cttcaagacattggaaagtgtgtggaagaaatcctgggatatctaaaatcatgtttcaac
agagaaccaacaatggcaacagtttgtgtacagcagttattgaaaacattatttgggaca
aatctggcttctcagtatgatggcttgtcttcaaacaccagcaaagctcaaggaaaagct
caacgcttaggttcttccaatttgagacctggtctctatcattattgcttcatggcacca
tatacacattttacacaggcacttgctgatgcaagtctaaggaatatggttcaggctgag
caagaacacgatgcttcaggatggtttgatgtgctgcagaaagtttctacgcagctgaaa
actaatattaccagtgcagcaaagcaccgtgctgataagaatgctattcacaatcacatt
cgtttatttgaaccccttgttataaaagcattgaaacaatacactacaacaacatcggta
cagctgcagagacaagttttagacttgcttgctcaactggttcagctacgagttaactac
tgtcttctggattcagatcaggtgtttattggatttgtgctaaagcagtttgaatacatt
gaagtcggacagttcagagaatcggaagcaattattccgaatatcttcttttttctggtg
ttgctgtcttacgagcgatatcattccaaacagataattggaattccaaagatcatccag
ctgtgtgatggcatcatggccagtgggaggaaagctgttacgcatgcaataccagctctg
cagcccatcgttcatgatctgtttgtgttaagaggaacaaataaagctgatgctggaaaa
gagttggaaacccagaaggaggtggtggtgtcaatgctgctgagacttattcagtaccat
caggtgctggaaatgttcatcttagtattgcagcaatgtcataaagaaaatgaagacaaa
tggaagagattatctcggcaaatagctgacattattctcccaatgcttgcaaaacaacag
atgcacatagattctcatgatgctctaggagtgctgaacactttgtttgaaattttggct
ccttcttcccttcgccctgttgacatgcttttaagaagtatgtttgttactcctaaaaca
atggcgtcagtgagcactgtccagctatggatttctggaattttagctatccttagagtt
ctcatttcacaatccacagaagacatagttctatctcgtgttcaagagctttcgttctca
ccatatttgatttcacgtcaagcaattaacagactgagacatggtgaaaataacgtatct
gcacaagaggatcacagtgaggttaaacagactaaatatctccctgaagagacattttct
aggttcctgttacagctggttggtattctacttgaagatattgttaccaaacaagtgaaa
gtggacatgaatgagcaacagcacactttctattgccaggagctaggcactttgcttatg
tgcttaatacatatcttcaaatcagggatgtttagaagaatcacagctgcagccaccagg
ctttttacaggagatggatctgatggtagtttctatacccttgaaagtctgagtgacctt
gttcagtccatggttcccacacatccttccttagttctcctctggtgtcagatcctactt
cttgttaattacacaaactacaactggtggtcagaagtgcatcaaactccaaagagacac
agtctttctactactaaattacttagccctcagatatctggagatagtgatgaatcagat
tcagaatctaaacgtggcatgtgcaatcgagagatagtgagaagaggagcactcattctt
ttttgtgactatgtgtgtcaaaacctgcatgattcagaacacttgacttggcttattgtg
aatcatgttcaagacttgattaatctgtcccatgagcctccagtacaagacttcattagt
gctgttcacagaaattcggcagccagtggtctcttcatccaggccattcaatcacggtgt
gagaatcttgcagctcctacgactctgaagaagactttacagtgcttagaggggatacat
ctcagccagtctggagcagtcttgacgttgtatgttgataagcttctttgtactccattc
cgtgtgcttgctcgcatggttgacacactggcttgccgtcgggtagaaatgcttttggct
gcaactttacagaacagcattactcagttaccagttgaagaactggatagaattcaggaa
taccttcagaacagtggattagcaacgagacaccaaagactttactcactcttggataga
ttccgtctaatggtggcaccagacacaactagtccttcacctctggttacctcacaccca
ctagatggagaagaccaaccaggtttagagaatgtaattctagataaagactggtatatg
tcactagtgaggtctcagtgttgcatcaagtctgactcagcactacttgaaggtgcagaa
ctgttaaacagaattcctcagcctgacctgaactccttcatgaacagcaaggaattcaac
ctgagcttgttagcaccttgtttaagccttggcatgaatgagatctcacgagaccagaag
agtagcctttttgaagcagctcggagggtaacactggatcatctgtccgccactgtacta
aaccttcctgccagccaccaggttttccaaccacttttgccaactgagccatcagcctac
tggaaaaaactaaacgatatctttggcgatgaggtgatgtatcagtctgtgatgaccctt
tgtcgtgcactcgctcagtatttgttgttactgtcaaaactaccaaccagtctccgtgtt
cctcctgacaaagaggatgatatcctgaaattcgtagtgatgtcaatagaggcgttatca
tggcatttaatacatgacagacttccaataagtatagatctgcaagctgctctggattgt
tgctgtctgactttacagcagccgagcctctggaatttgctggcttctgcagccaatgtg
acatatgcttgctctttaattaattgcattaagtttatcatagaagcagttgccgttgaa
cctggaaatcaacttcttagtcctgaaaggaagaagaatgcttcaaaaggcttaagtgag
gatgaagttgattcaaacatgcacaaaatgaaacacattactgcagcttgtgaaatggta
gctgagatggtggaatgtttgcagactgtcctggctttgggtcatcatagaaacagcagt
atcccagcatttcttactcctgtcctcaagaatatcatcatcagtttagcaaggctgcct
ctagtgaacagttacacaagagtgcctcccttggtctggaaattaggctggtcaccaaag
cctgcaggtgactttggcacagtttttcctgaaatcccagtagaatttcttcaagaaaaa
gagatctttaaagagttcatctatcgcattaacacacttggctggatcagccgtacccag
tttgaagagacgtgggctactttgcttggtgtacttgtaactcagcctattgtaatggac
caagaagagaaccagcaagaggaagatacagagaggacccaaattaatgttcttgcagta
caagccataacttccttggtgctgagtgcaatgacaatacctgttgcaggcaatccagca
gtcagctgtttggaacagcagcctcgcaacaaagctttaaaagctctggacacaaggttt
gggaggaagctaagtgttatcaggggaattgttgaacaagaaatccaagcaatggtatct
aagagagataatattgctactcatcacttatatcaagcttgggaccctgttccatcactt
tctcctgttagtacaggtgctcttatcagccatgaaaaactcctattgcaaatcaatact
gaacgagaaataggagatatggattataaactggggcaggtctctatacattccatatgg
ttaggaaataatatcactccactgagagaagaagagtggggtgaggatgaggaagatgag
aatgacgtacctgttccttcctcaccaccaacctctcctattaacaccaggaagcatcgg
gctggtgtagatatacattcttgttctcagttcttacttgaactatatagtcagtggata
ttaccatcaagccctaacaagagaacgccagtcatactgattagtgaagtggtgcgatca
ctcctggcagtatcggacttatttacagaaagaaatcagtttgagatgatgtatacaaca
ctgacagaactgcgaaaggtgcatccatcagaagatgagattcttatacagtatttgata
ccagccacttgtaaggctgcagctgttcttgggatggataaagctgtggctgaaccagta
agtcgactgctggaatctaccttaagaagcacccatatgccaagtcgaattggggctctg
catggaattctttatatccttgagtgtgatctgcttgatgagacagcaaagcaactcatt
ccaatcatcagcgagtatttactctccaatttgagagcagtagcacattgtgtcactgtc
cataaccaacagcatatcttagtaatgtgtgcagctgcgttctatttgatagagaactat
ccacttgatgtgggacctgaattctctgcaggaattatacagatgtgtggagtcatggtg
tctggaagtgatgaatcaacaccatccattatttaccattgtgtcctgaggggattagaa
cgactcctcctttcggagcagctttccaggctggatagtgaatctctggttaaactgagt
gttgacagagtgaatgtgcagagcccccacagagcaatggcagctcttgggctaatgctg
acttgcatgtacacaggaaaggaaaaagtcagcccaagtcgttccacagatgcaaatcct
gcagcccccgacagtgaatctgtgatcgtggctatggaacgagtatctgttctttttgat
aggatcaggaagggatttccttttgaagctagagtagtggcccgaatccttccgcaattt
cttgatgacttttttcctccacaagatgtaatgaataaagttattggagaatttctatcc
aatcagcagccttatccacaatttatggcaacagtagtttataaggtattccagacactg
cataccactggacagtcctcaatggttcgtgactgggtgatgctgtctctctctaatttc
acacaaaggacacctgtggcaatggcaatgtggagtctttcctgtttttttgtcagtgct
tccaccagtcaatggatttcagcaattcttccacatattatcagcagaatgggaaaactg
gagcaagtggatgttaacatcttctgtttggtggccatggacttttaccgacatcagatt
gatgaagaattagatcggagggcttttcagtcagtgttcgaggtggtagcatctccagga
actccgtatcatcgcctcctaacttgtttgcaaaatgtccacaaggtcacagcatgttga
DBGET
integrated database retrieval system
