Gallus gallus (chicken): 422878
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Entry
422878 CDS
T01006
Symbol
HTT
Name
(RefSeq) LOW QUALITY PROTEIN: huntingtin isoform X1
KO
K04533
huntingtin
Organism
gga
Gallus gallus (chicken)
Brite
KEGG Orthology (KO) [BR:
gga00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gga03019
]
422878 (HTT)
04131 Membrane trafficking [BR:
gga04131
]
422878 (HTT)
03029 Mitochondrial biogenesis [BR:
gga03029
]
422878 (HTT)
Messenger RNA biogenesis [BR:
gga03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
422878 (HTT)
Membrane trafficking [BR:
gga04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
422878 (HTT)
Mitochondrial biogenesis [BR:
gga03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
422878 (HTT)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
HEAT_GCN1
DUF4276
HEAT_EF3_N
Motif
Other DBs
NCBI-GeneID:
422878
NCBI-ProteinID:
XP_420822
CGNC:
11658
Ensembl:
ENSGALG00000015635
LinkDB
All DBs
Position
4:complement(81638780..81716852)
Genome browser
AA seq
3095 aa
AA seq
DB search
MATMEKLMKAFESLRSFQQQQVPAAIPEEPTQRPKKELLTTKKDRVNHCLTICENIVAQS
LRNSPEFQKLLGIAMELFLLCSEDVESDVRMVADECLNKVIKALMDSNLPRLQLELYKEI
KKNGASRSLRAALWRFAELAHLVRPQKCRPYLVNLLPCLTRISKRPEESVQETLAAAIPK
IMAAFGNFANDNEIKVLLKAFIANLKSSSPTIRRTAAGSAVSICQHSRRTQYFYAWLLNV
LLGLLVPVEDDHPTLLILGVLLTLRYLIPLLQQQVKDTSLKGSFGVTRKETEISPSPEQL
IQVYELTLHYTQHQDHNVVTGALELLQQLFRTPPPELLHALTSLGGIAQVSVSKDESAIR
SRSGSIVELIAGGGSSCSPVLARKHKGKILLGEEEGLEDDPETRSDVSAASFAASVKGEI
TSELASSSGVSTAGSVGSSAADPTGHDIITEQPRSQHTLQSDSVDLSSCDLTSTATEGED
DDVLSRSSSQISAVQSDPTMDLNDGTQASSPISDSSQTTTEGPDSAVTPSDSSEIVLEGA
EGQYSGMQIGQLQDEEDEAANILQDDSSESFRSSIALQQPHLLKTMSHSRQPSDSSVDRF
PSKEDAVEPIDHENKPSRVKGDIGHYTDGNSAPLVHCVRLLSASFLLTGEKGALVPDRDV
RVSVKALAVSCVGAAVALHPESFFSKLYKMPLEAMGEDYEEQYVSDILNYIDHGDPQIRG
ATAILCGTIINSILLKSRFDVEKWLVNVRSSTGNLFSLVDCIPLLQKTLKDESSVTCKLA
CTAVRHCIMSLCSSSYSELGLQLIVDLLTLKNSSYWLVRTELLETLAEVDFRLVSFLEGK
TDSLHRGVHHYTGLLKIQERVLNDVVICLLGDEDPRVRHVAAASLMRLVPKLFYNCDQGQ
ADPVVAVARDQSGVYLKLLMHETQPPSHFAVSTITRTYRGYNMLQNPTDVTMENNLSRVV
AAISHALTISTTRSLTFGCCEALCLLSTTFPVCTWTVGWHCGVSQPSPSDDAQKGCTIGM
AGMVLSLLSSTWFPLDLSAHQDALILTGNLLAASAPKCLKNPWSAEEDSNQVAAKQEEPW
PALADRTLVTLVEQLFSHLLKVINICAHVMDDVAPGPAVKAALPSLTNPPSLSPIRRKGK
EREPVEQTSVPMSPKKGGETSPATRQTDASGPAPTSKSSSVGSFYHLPSYLKLYDVLKAT
HANYKVTLDLQNSNEKFGCFLRSALDVLSQILELATLQDIGKCVEEILGYLKSCFNREPT
MATVCVQQLLKTLFGTNLASQYDGLSSNTSKAQGKAQRLGSSNLRPGLYHYCFMAPYTHF
TQALADASLRNMVQAEQEHDASGWFDVLQKVSTQLKTNITSAAKHRADKNAIHNHIRLFE
PLVIKALKQYTTTTSVQLQRQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQ
FRESEAIIPNIFFFLVLLSYERYHSKQIIGIPKIIQLCDGIMASGRKAVTHAIPALQPIV
HDLFVLRGTNKADAGKELETQKEVVVSMLLRLIQYHQVLEMFILVLQQCHKENEDKWKRL
SRQIADIILPMLAKQQMHIDSHDALGVLNTLFEILAPSSLRPVDMLLRSMFVTPKTMASV
STVQLWISGILAILRVLISQSTEDIVLSRVQELSFSPYLISRQAINRLRHGENNVSAQED
HSEVKQTKYLPEETFSRFLLQLVGILLEDIVTKQVKVDMNEQQHTFYCQELGTLLMCLIH
IFKSGMFRRITAAATRLFTGDGSDGSFYTLESLSDLVQSMVPTHPSLVLLWCQILLLVNY
TNYNWWSEVHQTPKRHSLSTTKLLSPQISGDSDESDSESKRGMCNREIVRRGALILFCDY
VCQNLHDSEHLTWLIVNHVQDLINLSHEPPVQDFISAVHRNSAASGLFIQAIQSRCENLA
APTTLKKTLQCLEGIHLSQSGAVLTLYVDKLLCTPFRVLARMVDTLACRRVEMLLAATLQ
NSITQLPVEELDRIQEYLQNSGLATRHQRLYSLLDRFRLMVAPDTTSPSPLVTSHPLDGE
DQPGLENVILDKDWYMSLVRSQCCIKSDSALLEGAELLNRIPQPDLNSFMNSKEFNLSLL
APCLSLGMNEISRDQKSSLFEAARRVTLDHLSATVLNLPASHQVFQPLLPTEPSAYWKKL
NDIFGDEVMYQSVMTLCRALAQYLLLLSKLPTSLRVPPDKEDDILKFVVMSIEALSWHLI
HDRLPISIDLQAALDCCCLTLQQPSLWNLLASAANVTYACSLINCIKFIIEAVAVEPGNQ
LLSPERKKNASKGLSEDEVDSNMHKMKHITAACEMVAEMVECLQTVLALGHHRNSSIPAF
LTPVLKNIIISLARLPLVNSYTRVPPLVWKLGWSPKPAGDFGTVFPEIPVEFLQEKEIFK
EFIYRINTLGWISRTQFEETWATLLGVLVTQPIVMDQEENQQEEDTERTQINVLAVQAIT
SLVLSAMTIPVAGNPAVSCLEQQPRNKALKALDTRFGRKLSVIRGIVEQEIQAMVSKRDN
IATHHLYQAWDPVPSLSPVSTGALISHEKLLLQINTEREIGDMDYKLGQVSIHSIWLGNN
ITPLREEEWGEDEEDENDVPVPSSPPTSPINTRKHRAGVDIHSCSQFLLELYSQWILPSS
PNKRTPVILISEVVRSLLAVSDLFTERNQFEMMYTTLTELRKVHPSEDEILIQYLIPATC
KAAAVLGMDKAVAEPVSRLLESTLRSTHMPSRIGALHGILYILECDLLDETAKQLIPIIS
EYLLSNLRAVAHCVTVHNQQHILVMCAAAFYLIENYPLDVGPEFSAGIIQMCGVMVSGSD
ESTPSIIYHCVLRGLERLLLSEQLSRLDSESLVKLSVDRVNVQSPHRAMAALGLMLTCMY
TGKEKVSPSRSTDANPAAPDSESVIVAMERVSVLFDRIRKGFPFEARVVARILPQFLDDF
FPPQDVMNKVIGEFLSNQQPYPQFMATVVYKVFQTLHTTGQSSMVRDWVMLSLSNFTQRT
PVAMAMWSLSCFFVSASTSQWISAILPHIISRMGKLEQVDVNIFCLVAMDFYRHQIDEEL
DRRAFQSVFEVVASPGTPYHRLLTCLQNVHKVTAC
NT seq
9288 nt
NT seq
+upstream
nt +downstream
nt
atggccaccatggagaagctgatgaaggccttcgagtcgctgcgctccttccagcagcag
caggtgccggccgccatccccgaggagcccacgcagagaccaaagaaggaacttttaact
accaagaaagatcgagtgaatcattgcctgacaatatgtgaaaacattgttgctcagtct
ttaagaaattctccagaattccagaaactgctggggattgctatggaactttttctcctc
tgcagtgaggatgtagaatctgatgtccggatggttgctgatgaatgccttaataaagtt
attaaagctttgatggattccaatctacctaggttacaattagaactgtataaggagatt
aaaaagaatggtgcttcccgaagtcttcgtgctgcgctctggagatttgctgagcttgct
catctagttcggcctcagaaatgcagaccatacttagtgaaccttttgccctgtttaaca
agaataagtaagaggcctgaagaatctgtacaagaaacattagctgcagcaataccaaaa
atcatggcagcatttggcaattttgcaaacgacaatgagattaaggtcttattgaaggct
tttatagctaatcttaagtccagttcccctactatccgtcgaacagctgcgggatcagca
gtaagcatctgtcaacattcgcgaagaacgcagtatttttatgcctggttattgaatgta
cttttaggcttgttggttcctgtagaagatgatcatcctacacttttaattctgggtgtt
ttacttacactaaggtatctcatacctttattgcaacagcaagtgaaggataccagcctg
aaaggcagttttggtgtaacaaggaaagaaacagagatttcaccttcaccagaacagctt
atacaggtttatgagttgactctgcattacactcagcatcaggaccataatgttgtgact
ggggctttggaattactacaacagctctttagaacaccgccacctgaacttctccatgcc
ttgacttctttaggtggcattgcacaggtcagtgtatccaaagatgaatctgccatcagg
agccgcagtgggagcatagtggagctcatagctggaggggggtcttcatgcagccctgtt
cttgcgagaaagcataaaggtaaaatacttcttggtgaagaagaaggtttggaagatgat
cctgagacccgatcagatgtcagcgctgcatcatttgcagcttctgtgaaaggcgagata
accagtgaactagcttcttcatcgggtgtatcaacagctgggtcagtagggagttcagct
gctgatcctaccggacacgatatcattactgaacagccacgttctcaacatacgttgcag
tcagactctgtagatctgtcaagctgtgatttgacaagtacagctactgaaggggaagac
gatgatgtgcttagtcgaagctctagccagatcagtgctgtccaatcagatcccactatg
gacttgaatgatggtacacaggcttcctcaccaattagtgatagctctcagactactact
gaaggtccagactctgctgtaaccccttcggacagttctgaaattgttttggagggtgct
gaaggacagtattctggaatgcaaattggacagctgcaggatgaggaagatgaagctgca
aatattctccaggatgattcatcagagtctttcaggagttctattgctcttcagcagcct
cacctgttgaaaaccatgagccatagtaggcagccttctgatagcagcgttgacagattt
ccatcaaaagaagatgcagtggaacctattgatcatgaaaataagccctccagggtaaaa
ggagacataggtcactacaccgatggaaattctgcacctttagtacactgtgtaagactt
ctgtcagcctcttttctacttactggggagaaaggagctttagttccagatagagatgtg
agagtcagtgtaaaagccctggcagtaagttgtgttggagcagctgttgcccttcatcct
gagtctttcttcagcaaattgtataaaatgccccttgaagcaatgggagaagactatgag
gagcagtatgtatcagatattctgaactacattgaccatggagatccccagattagagga
gctactgctattctatgtggaacaatcatcaattctattctacttaaatcacgttttgat
gtggagaaatggctagtaaatgtcagaagctcaacaggaaatctcttttccttggtagac
tgcatacctctattgcagaaaacactgaaagatgagtcctctgttacatgcaaactggct
tgtacagctgtgaggcattgcatcatgagcttgtgtagtagcagttatagtgaactaggt
ttacaattaattgttgacctccttacgctgaagaatagctcatactggctagtgaggaca
gaacttctggaaacacttgcggaggtggattttaggttagtcagctttttggaaggaaaa
actgacagcttgcacagaggtgttcatcattatactggtctactaaaaattcaggagagg
gtgctcaacgatgttgttatctgtttgcttggagatgaagatccaagagtacgacatgtt
gctgcagcttcattaatgaggcttgttccaaagctgttttataactgtgatcaaggacaa
gctgatccagttgtggcagtagcaagagaccaaagcggcgtctacctgaaactactaatg
catgaaacacagcctccatctcactttgcagtgagcactatcactagaacatacagaggt
tacaatatgctgcaaaatccaacggatgtcactatggaaaacaatctttcaagggttgtt
gctgcaatttcccacgcattgacaatatccactacaagatcacttacatttggctgctgt
gaagctttgtgtcttctctccacaacctttccagtctgcacctggactgtgggatggcac
tgtggtgtttcccagccaagtccttcagatgatgctcagaagggctgcactattggaatg
gccggcatggtcctctctcttctttcatcaacatggttccctttggacctttctgctcat
caggatgctttgattttgactggaaacttgcttgcagcgagtgctcccaagtgtttaaag
aacccttggagtgctgaagaagattcaaaccaagttgctgcaaagcaggaggaaccgtgg
ccagctctggcagaccgaactcttgttactttggtagaacagctcttttctcatctgctt
aaggtcattaatatttgtgcacatgtaatggatgatgttgctcctggcccagcagtaaag
gcagcattaccttctctcacaaacccaccttctcttagtccaattcggaggaaggggaaa
gagagggagcctgtagagcagacttctgtgccaatgagccctaaaaaaggtggtgaaact
agtccagctactaggcaaactgatgctagtggtcctgctccaacaagtaaatcatcttca
gtaggaagcttttatcatcttccatcatatctgaagttatacgatgtcttgaaagcgacc
catgctaactataaggttactttggatctccagaacagtaatgaaaagtttggatgcttc
ttacggtctgccttagatgttctgtcgcaaatcttggaacttgcaactcttcaagacatt
ggaaagtgtgtggaagaaattctgggatatctaaaatcatgtttcaacagagaaccaaca
atggcaacagtttgtgtacagcagttattgaaaacattatttgggacaaatctggcttct
cagtatgatggcttgtcttcaaacaccagcaaagctcaaggaaaagctcaacgcttaggt
tcttccaatttgagacctggtctctatcattattgcttcatggcaccatatacacatttt
acacaggcacttgctgatgcaagtctaaggaatatggttcaggctgagcaagaacacgat
gcttcaggatggtttgatgtgctgcagaaagtttctacgcagctgaaaactaatattacc
agtgcagcaaagcaccgtgctgataagaatgctattcacaatcacattcgtttatttgaa
ccccttgtcataaaagcattgaaacaatacactacaacaacatcggtacagctgcagaga
caagttttagacttgcttgctcaactggttcagctacgagttaactactgtcttctggat
tcagatcaggtgtttattggatttgtgctaaagcagtttgaatacattgaagtcggacag
ttcagagaatcagaagcaattattccaaatatcttcttttttctggtgttgctgtcttac
gagcgatatcattccaaacagataattggaattccaaagatcattcagctgtgtgatggc
atcatggccagtgggaggaaagctgttacgcatgcaataccagctctgcagcccatcgtt
catgatctgtttgtgttaagaggaacaaataaagctgatgctggaaaagagttggaaacc
cagaaggaggtggtggtgtcaatgctgctgagacttattcagtaccatcaggtgctggaa
atgttcatcttagtattgcagcaatgtcataaagaaaatgaagacaaatggaagagatta
tctcggcaaatagctgacattattctcccaatgcttgcaaaacaacagatgcacatagat
tctcatgatgctctaggagtactgaacactttgtttgaaattttggctccttcttccctt
cgccctgttgacatgcttttaagaagtatgtttgttactcctaaaacaatggcgtcagtg
agcactgtccagctatggatttctggaattttagctatccttagagttctcatttcacaa
tccacagaagacatagttctatctcgtgttcaagagctttcgttctcaccatatttgatt
tcacgtcaagcaattaacagactgagacatggtgaaaataacgtatctgcacaagaggat
cacagtgaggttaaacagactaaatatctccctgaagagacattttctaggttcctgtta
cagctggttggtattctacttgaagatattgttaccaaacaagtgaaagtggacatgaat
gagcaacagcacactttctattgccaggagctaggcactttgcttatgtgcttaatacat
atcttcaaatcagggatgtttagaagaatcacagctgcagccaccaggctttttacagga
gatggatctgatggtagtttctatacccttgaaagtctgagtgaccttgttcagtccatg
gttcccacacatccttccttagttctcctctggtgtcagatcctacttcttgttaattac
acaaactacaactggtggtcagaagtgcatcaaactccaaagagacacagtctttctact
actaaattacttagccctcagatatctggagatagtgatgaatcagattcagaatctaaa
cgtggcatgtgcaatcgagagatagtgagaagaggagcactcattcttttttgtgactat
gtgtgtcaaaacctgcatgattcagaacacttgacttggcttattgtgaatcatgttcaa
gacttgattaatctgtcccatgagcctccagtacaagacttcattagtgctgttcacaga
aattcggcagccagtggtctcttcatccaggccattcaatcacggtgtgagaatcttgca
gctcctacgactctgaagaagactttacagtgcttagaggggatacatctcagccagtct
ggagcagtcttgacgttgtatgttgataagcttctttgtactccattccgtgtgcttgct
cgcatggttgacacactggcttgccgtcgggtagaaatgcttttggctgcaactttacag
aacagcattactcagttaccagttgaagaactggatagaattcaggaataccttcaaaac
agtggattagcaacgagacaccaaagactttactcactcttggatagattccgtctaatg
gtggcaccagacacaactagtccttcacctctggttacctcacacccactagatggagaa
gaccaaccaggtttagagaatgtaattctagataaagactggtatatgtcactagtgagg
tctcagtgttgcatcaagtctgactcagcactacttgaaggtgcagaactgttaaacaga
attcctcagcctgacctgaactccttcatgaacagcaaggaattcaacctgagcttgtta
gcaccttgtttaagccttggcatgaatgagatctcacgagaccagaagagtagccttttt
gaagcagctcggagggtaacactggatcatctgtccgccactgtactaaaccttcctgcc
agccaccaggttttccaaccacttttgccaactgagccatcagcctactggaaaaaacta
aacgatatctttggcgatgaggtgatgtatcagtctgtgatgaccctttgtcgtgcactc
gctcagtatttgttgttactgtcaaaactaccaaccagtctccgtgttcctcctgacaaa
gaggatgatatcctgaaattcgtagtgatgtcaatagaggcgttatcatggcatttaata
catgacagacttccaataagtatagatctgcaagctgctctggattgttgctgtctgact
ttacagcagccgagcctctggaatttgctggcttctgcagccaatgtgacatatgcttgc
tctttaattaattgcattaagtttatcatagaagcagttgccgttgaacctggaaatcaa
cttcttagtcctgaaaggaagaagaatgcttcaaaaggcttaagcgaggatgaagttgat
tcaaacatgcacaaaatgaaacacattactgcagcttgtgaaatggtagctgagatggtg
gaatgtttgcagactgtcctggctttgggtcatcatagaaacagcagtatcccagcattt
cttactcctgtcctcaagaatatcatcatcagtttagcaaggctgcctctagtgaacagt
tacacaagagtgcctcccttggtctggaaattaggctggtcgccaaagcctgcaggtgac
tttggcacagtttttcctgaaatcccagtagaatttcttcaagaaaaagagatctttaaa
gagttcatctatcgcattaacacacttggctggatcagccgtacccagtttgaagagacg
tgggctactttgcttggtgtacttgtaactcagcctattgtaatggaccaagaagagaac
cagcaagaggaagatacagagaggacccaaattaatgttcttgcagtacaagccataact
tccttggtgctgagtgcaatgacaatacctgttgcaggcaatccagcagtcagctgtttg
gaacagcagcctcgcaacaaagctttaaaagctctggatacaaggtttgggaggaagcta
agtgttatcaggggaattgttgaacaagaaatccaagcaatggtatctaagagagataat
attgctactcatcacttatatcaagcttgggaccctgttccatcactttctcctgttagt
acaggtgctcttatcagccatgaaaaactcctattacaaatcaatactgaacgagaaata
ggagatatggattataaactggggcaggtctctatacattccatatggttaggaaataat
atcactccactgagagaagaagagtggggtgaggatgaggaagatgagaatgacgtacct
gttccttcctcaccaccaacctctcctattaacaccaggaagcatcgggctggtgtagat
atacattcttgttctcagttcttacttgaactatatagtcagtggatattaccatcaagc
cctaacaagagaacgccagtcatactgattagtgaagtggtgcgatcactcctggcagta
tcggacttatttacagaaagaaatcagtttgagatgatgtatacaacactgacagaactg
cgaaaggtgcatccatcagaagatgagattcttatacagtatttgataccagccacttgt
aaggctgcagctgttcttgggatggataaagctgtggctgaaccagtaagtcgactgctg
gaatctaccttaagaagcacccatatgccaagtcgaatcggggctctgcatggaattctt
tatatccttgagtgtgatctgcttgatgagacagcaaagcaactcattccaatcatcagc
gagtatttactctccaatttgagagcagtagcacattgtgtcactgtccataaccaacag
catatcttagtaatgtgtgcagctgcgttctatttgatagagaactatccacttgatgtg
ggacctgaattctctgcaggaattatacagatgtgtggagtcatggtgtctggaagtgat
gaatcaacaccatccattatttaccattgtgtcctgaggggattagaacgactcctcctt
tcggagcagctttccaggctggatagtgaatctctggttaaactgagtgttgacagagtg
aatgtgcagagcccccacagagcaatggcagctcttgggctaatgctgacttgcatgtac
acaggaaaggaaaaagtcagcccaagtcgttccacagatgcaaatcctgcagcccccgac
agtgaatctgtgatcgtggctatggaacgagtatctgttctttttgataggatcaggaag
ggatttccttttgaagctagagtagtggcccgaatccttccgcaatttcttgatgacttt
tttcctccacaagatgtaatgaataaagttattggagaatttctatccaatcagcagcct
tatccacaatttatggcaacagtagtttataaggtattccagacactgcataccactgga
cagtcctcaatggttcgtgactgggtgatgctgtctctctctaatttcacacaaaggaca
cctgtggcaatggcaatgtggagtctttcctgtttttttgtcagtgcttccaccagtcaa
tggatttcagcaattcttccacatattatcagcagaatgggaaaactggagcaagtggat
gttaacatcttctgtttggtggccatggacttttaccgacatcagattgatgaagaatta
gatcggagggcttttcagtcagtgttcgaggtggtagcatctccaggaactccgtatcat
cgcctcctaacttgtttgcaaaatgtccacaaggtcacagcatgttga
DBGET
integrated database retrieval system
