Gallus gallus (chicken): 424056
Help
Entry
424056 CDS
T01006
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X2
KO
K12828
splicing factor 3B subunit 1
Organism
gga
Gallus gallus (chicken)
Pathway
gga03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gga00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
424056 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gga03041
]
424056 (SF3B1)
03036 Chromosome and associated proteins [BR:
gga03036
]
424056 (SF3B1)
Spliceosome [BR:
gga03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
424056 (SF3B1)
Complex B
424056 (SF3B1)
Complex C
U2 SnRNP specific factors
424056 (SF3B1)
Chromosome and associated proteins [BR:
gga03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
424056 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
DUF2298
TALPID3
Motif
Other DBs
NCBI-GeneID:
424056
NCBI-ProteinID:
XP_015144977
CGNC:
6082
Ensembl:
ENSGALG00000008038
LinkDB
All DBs
Position
7:complement(10184804..10205189)
Genome browser
AA seq
1156 aa
AA seq
DB search
MNARTYMDVMREQHLTKEEREIRQQLAEKAKAGELKVVNGAASQPPSKRKRRWDQTADQT
PGATPKKLSSWDQAETPGHTPSLRWDETPGRAKGSETPGATPGSKIWDPTPSHTPAGAAT
PGRDTPGHATPGHGGATSSARKNRWDETPKTERDTPGHGSGWAETPRTDRGGDSIGETPT
PGASKRKSRWDETPASQMGGSTPVLTPGKTPIGTPAMNMATPTPGHIMSMTPEQLQAWRW
EREIDERNRPLSDEELDAMFPEGYKVLPPPAGYVPIRTPARKLTATPTPLGGMTGFHMQT
EDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVDVDESTLSPEEQKERKIMKLLLKIKNGT
PPMRKAALRQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVR
PYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTT
ARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVE
IIEHGLVDEQQKVRTISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLK
AIGYLIPLMDAEYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKT
EILPPFFKHFWQHRMALDRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMV
METIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPY
LPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPE
VLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAE
YVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQN
RVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYA
VTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQ
AVMGALEGLRVAIGPCRMLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPRIY
NDEKNTYIRYELDYIL
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgaatgccagaacatacatggatgttatgcgtgaacagcatttaacaaaagaagagagg
gagattaggcaacagctagctgaaaaagctaaagctggagagcttaaagtcgtcaatgga
gccgcatctcagccaccatcaaaacgcaagcggcgttgggatcaaacagctgatcagact
cctggtgcaacacctaaaaagttatccagttgggatcaagcagagactcctggacacaca
ccatctctgcgatgggatgaaactccaggccgtgcaaagggtagcgaaactcccggtgcc
acccctggctcaaagatatgggatcccactcccagtcacacgccagcaggagctgcaaca
cctggacgggacacacctggtcatgcaacaccaggccatggaggtgccacttccagcgca
cgtaaaaatcgatgggatgaaactcctaaaacagaaagagatactccgggacatggcagt
ggatgggctgagactcctcgtacggatagaggtggtgattccattggtgagacaccaacc
ccaggagcaagtaaaagaaagtcccgatgggatgaaacacctgctagccagatgggtggc
agcactcctgttttgacacctggcaaaacacccattggtacaccagctatgaacatggca
actcctacgccaggtcatatcatgagcatgactcctgaacagctgcaggcttggcgctgg
gagagggaaattgatgagagaaacagaccactttctgatgaagaattggatgctatgttc
ccagaaggatataaggttcttcccccaccagctggttatgtacctattcgtactccagca
cgtaaacttacagcaactcccacacctttgggtggtatgactggattccacatgcagaca
gaggaccggactatgaagagtgtcaatgaccagccttctggcaaccttccattcctgaag
ccagatgatatccagtacttcgataagctgctggttgatgttgatgaatcaactctcagt
cctgaagagcagaaggagaggaagataatgaaattacttttgaaaataaagaatggcaca
cctcccatgagaaaggctgcattgagacaaattactgataaagctcgggaatttggagct
gggccactgtttaatcagattctaccattgctgatgtccccaacactggaggatcaggag
cgccacttacttgtcaaagtcatagacagaattctgtacaaactggatgacctggtccga
ccatacgtacataagattcttgtcgtcattgaaccactgctgattgatgaagactattac
gccagagtggaaggcagagaaattatttccaacttggctaaggctgctggtttggcaaca
atgatttctacgatgcgacctgatattgataacatggatgaatacgtccgaaataccaca
gctcgagcctttgctgttgttgcctctgctttgggcattccttctctgttgccgttcttg
aaagctgtctgtaaaagcaaaaaatcctggcaagcgaggcatactggcatcaagattgtg
cagcaaattgctattcttatgggttgtgctatcttgcctcatctcaggagcttggttgaa
attattgaacatggtcttgtggatgagcagcagaaggttcgtaccatcagtgctttggct
attgctgctttagctgaggcagctactccctatggtattgagtcattcgattctgttctg
aagcctttatggaagggtatacgtcaacacagaggaaagggtttggctgcatttttgaag
gctattggttatctgattccactcatggatgctgagtatgcaaactattataccagagaa
gtcatgttaattcttatcagagagttccagtctcctgatgaagagatgaaaaaaattgtt
ctgaaggtggtaaagcagtgttgtggtacagatggtgttgaagcaaactacattaaaaca
gaaatcttgccaccatttttcaaacacttctggcagcacagaatggcattggacaggaga
aattacagacagctggtggatacaacagtggagctggcaaataaagttggagcagcagaa
attatttctaggattgtggatgatctgaaagatgaggctgaacagtacagaaaaatggtc
atggaaacaattgagaagataatgggaaatctgggtgcggcagacattgatcataagcta
gaagaacaactaattgatgggatcttgtatgcctttcaagaacagaccacagaggattct
gtgatgctgaatggctttggcacagtggttaatgctcttggcaaaagagtgaagccctac
ctgccgcagatctgcggtacggttctgtggcgtttgaacaacaagtcggcgaaggtgcgg
cagcaggctgctgacctcatctctcgtactgcggtggtcatgaagacttgtcaagaggaa
aaactgatgggacatctgggtgttgtgctgtatgagtacctgggtgaagaatatccagag
gtactgggcagcatccttggagcgcttaaggctattgttaatgtcataggtatgcacaag
atgactccacctatcaaagatctgctgccacggcttacacctattttgaagaacagacat
gagaaagtacaggagaattgtatcgatctggttgggcgcattgcagacagaggtgcagaa
tatgtttctgcaagagaatggatgaggatctgctttgagctgctggagttactaaaagct
cacaagaaggctattcgaagagccacagtaaatactttcggatatattgcaaaagctatt
ggacctcacgatgtcttggctacgttgctgaataacttgaaagttcaggaaaggcagaac
agagtctgtactacagtagcaattgctattgtagctgaaacatgctcacctttcacagtg
ctgcctgcgctcatgaatgaatacagagttccagaactgaatgtccagaatggtgtgtta
aaatctctttctttcctgtttgaatacattggagagatgggaaaagattatatttatgcc
gttacgccattgcttgaagacgctttaatggacagagatcttgtacacagacaaacagcc
agtgctgtggtgcaacacatgtctcttggtgtttatgggtttggctgtgaagattccctt
aatcatttgttaaactacgtatggcctaatgtgtttgaaacctctccacacgtcattcag
gcagtcatgggggctctggagggcctcagagttgctattggcccttgccgaatgttgcag
tattgtttgcagggtttgtttcaccctgcccggaaagtcagagacgtttattggaagatc
tataattccatctacatcggctcacaggatgctctgatagcacactatccaagaatctat
aacgatgaaaagaacacctatattcgttatgaacttgactacatcttataa
DBGET
integrated database retrieval system
