Gallus gallus (chicken): 424778
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Entry
424778 CDS
T01006
Symbol
XRN1
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X2
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
gga
Gallus gallus (chicken)
Pathway
gga03008
Ribosome biogenesis in eukaryotes
gga03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gga00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
424778 (XRN1)
09123 Folding, sorting and degradation
03018 RNA degradation
424778 (XRN1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gga03019
]
424778 (XRN1)
03009 Ribosome biogenesis [BR:
gga03009
]
424778 (XRN1)
03016 Transfer RNA biogenesis [BR:
gga03016
]
424778 (XRN1)
03036 Chromosome and associated proteins [BR:
gga03036
]
424778 (XRN1)
Messenger RNA biogenesis [BR:
gga03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
424778 (XRN1)
mRNA degradation factors
5'-3' decay
5' exonucleases
424778 (XRN1)
Ribosome biogenesis [BR:
gga03009
]
Eukaryotic type
Pre-60S particles
RNases
424778 (XRN1)
Transfer RNA biogenesis [BR:
gga03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
424778 (XRN1)
Chromosome and associated proteins [BR:
gga03036
]
Eukaryotic type
Gene silencing
piRNA pathway
424778 (XRN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
424778
NCBI-ProteinID:
XP_015132447
CGNC:
1951
Ensembl:
ENSGALG00000002706
LinkDB
All DBs
Position
9:complement(10573359..10611985)
Genome browser
AA seq
1769 aa
AA seq
DB search
MGVPKFYRWISERYPCLSQVLKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISEDKI
FADIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKALEKGE
ILPTEARFDSNCITPGTEFMARLHEHLKYFVNMKISTDKSWQGITVYLSGHETPGEGEHK
IMEFIRSEKAKPHHDPNTRHCLYGLDADLIMLGLTTHEAHFALLREEVRFGGKKSQRACA
PEETTFHLLHLSLMREYIDYEFSPVKDKISFDYDIEKIIDDWILMGFLVGNDFIPHLPHL
HINHDALPLLYRTYMAILPELGGYINENGHLNLKRFEKYLTRLSDFDREHFSEVFVDLKW
FESKVGNKYLNEAAGIAAEEARNNKQKKRKAQENSLCLAALEKNEDEVVTSKTVLEDEPE
DDDLFETEFRQYKRTYYMTKMGIEVVSDDFLADQAECYVQAIQWILHYYYHGVQSWSWYY
PYHYAPYLSDIRNISELKIQFELGKPFMPFEQLLAVLPAASKDLLPRCYQHLMVSQDSPI
IEYYPLDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMESCNKCLKEEEKRRNVHSACLMY
WYDKDAEFPYTSPWPEKFPAIERCHTRYKTIPLDAWHVEITHNKITKINKSALYFCGFPT
LKHIKHKFYLKKSGVQVFQQSSHGENMMLEILTDEKSKEQTVENVASSVLGKVVFVNWPH
LEEARVVAVSDGETKFYLEEPHGTQKLYMGNAVPPTKVTFVGDKEQSMWLKEVQGVSEHY
QRRKGIIIHETSVVVYAQLLTGNRYQLNQNGQVYLEKQWSKQALPFVYQTVVKDIKAFDS
RFSNIRTLDDLFPPGSTAFMLGSPYYGCMGEVQDSRDVIPEGRIRVVFSIPCEPQLDRLI
QNQHKYSVKYNPAYILASRLGVSGYLVSRFTGSIFIGRGSKKNPHGDHKANVGLNLKFNK
KNEEVPGYTKKVGNEWMYSSAVEQLLAEYLERVPELFSYIAKNSQEDIFYEDDIWPGEDE
NGAEKVQEIVAWLKAHPVSALSRSSCDLQILDAAIVEKIEEEIEKCKQRKSNKKVRVTVK
PHLLYRPLEQQNGVVPDRDAEYRLFDRVVNVRENFSVPVGLRGTIIGIKGASRETDVLFE
VLFDEEFLGGLTIRCSPARGYRLPSSALINLSHGVRSEMGNQKLTAIVKPQPAVNNYNSY
ASDLSSVCSQKVHLGGLNHSPRSLFVPTQQLNGRQHYNLRAENQGTSNSPHKGSFLSSNQ
KNKAQNKQDDEFCSIWQSLQGSGKSHHVQQNIHEKGAVLPQEIKLGSGNQFYKPGFNDGS
FRSQQRKQEPYKKFKEDSRFTRGESQPHNKIPNKQNFAGVNKHNVKLLKRNESVPVIQKA
ASDSPCTSGKDSELESLLASLKISKENEVQTSSKEARATNEEHLSPQSFAMKGTQMLKEI
LKIDGSDLETRNEAKSHVNDVPASPGRQDCHGAALQYRQTKKMAAYMNNPHSTGGPQSTP
ALGTGGHPFVGPQPTLSTPVSELSRICSLVGMSQPDFSFIKTPQTMTVCHIKLSNGLLVH
GPQCHSEAEAKEKAALSALQRLSSVGVNLPFPPPVFPNYQPLGVPVPPGSLPPVFSQPPA
NIMPPSSHMFGPVSWGTPVPIHGKHYYPGSYPGNVSLAGTIPVGSHNQFIPLQVTKKRAA
SKKNFEFKEFQSSPQAAPLKNEQPVSSDHIQQDSSSAPLKSPQAAQSTVSFQDNAATPSV
PRNKSAPNTSSKRKPRKLAVNFGTPKSAE
NT seq
5310 nt
NT seq
+upstream
nt +downstream
nt
atgggggtccccaagttctaccggtggatctcggagcggtacccctgcctcagccaggtg
ctgaaggagcatcagattccagaatttgacaacttatacttggacatgaatggcattata
caccaatgttcacatccaaatgatgatgatgttcacttcagaatctcagaagataagatt
tttgctgacatttttcactatttagaagtactgtttcgcattattaagccaaggaaagtt
ttcttcatggcagttgatggtgtagccccaagagcaaaaatgaatcagcaacgtggcaga
cggtttagatcagcgaaagaggcagaggacaaaataaaaaaggcattggaaaagggagaa
attctccctacggaagccaggtttgactccaactgtattacaccaggaaccgaattcatg
gccagactgcacgaacatcttaaatatttcgtcaatatgaaaatttccacagacaaatcc
tggcagggaataacagtctacttatcaggccacgagacaccaggtgaaggagagcataaa
attatggaattcatcagatcagaaaaagcaaagcctcatcatgatccaaacacaaggcac
tgtctctatggcttagatgctgacttgataatgctgggattaacaactcatgaggcacac
tttgcgctcttaagagaagaagtcagatttggtggtaaaaaatctcaaagagcatgtgca
ccagaggaaaccacatttcatttattgcacttgtcactgatgagagaatatattgattat
gaattttcaccagtaaaagacaagatttcctttgactacgatattgagaagataatagat
gattggatcttaatgggtttcctcgtaggcaatgattttatccctcatctacctcattta
cacattaatcacgatgcactgccgctactttatagaacatacatggctatcttgccagaa
ctgggaggttacataaatgaaaatgggcatctgaatttaaagcgctttgagaaatatctc
acaagattgtcagattttgatcgtgagcacttcagtgaagtctttgtagacctaaaatgg
tttgaaagtaaagtaggcaataaatacctcaatgaggcagctggtattgcagcagaagaa
gccagaaacaataaacagaagaaacgcaaggctcaggaaaattcgctctgtttggctgct
ttagaaaaaaatgaagatgaagttgtcacctctaaaactgttttggaagatgaaccagaa
gatgatgatctgtttgaaacggagtttaggcaatacaagagaacttactacatgactaag
atgggtatagaagtagtttctgatgatttcttggctgaccaagctgaatgttacgtccag
gcaatacaatggattttgcattattattaccatggagttcagtcttggagttggtattat
ccttatcattatgcaccttatctgtcagatattcgcaacatcagtgaactcaaaatccag
tttgaactgggaaaaccttttatgccatttgagcagcttcttgctgtactaccagcagct
agcaaagatctgttacctagatgttaccagcatttgatggttagtcaagattctcctatt
atagaatattatcctctggactttaaaactgacctgaatggaaaacagcaagaatgggaa
gctgtggtattaatcccatttattgatgagaaacgactgctggaagccatggaatcgtgt
aataagtgcctaaaagaagaggagaaacggagaaatgttcacagtgcttgcttgatgtat
tggtatgacaaagatgcagagttcccgtacacgtcaccgtggccagagaagtttcccgca
atagaaagatgccataccaggtacaaaacaatacctttggatgcttggcatgtagaaatc
acccacaacaaaataactaaaatcaacaagagtgcgttatatttttgtgggtttcctacc
ttaaagcacattaaacataagttctaccttaaaaaaagtggcgtacaagtgtttcagcaa
agcagccatggagaaaacatgatgttagaaatcctaactgatgagaaatcaaaagagcaa
acagtggaaaatgttgccagttcagttcttggaaaggtggtttttgttaactggccgcac
cttgaggaagccagagttgttgctgtgtcagatggagaaactaagttttatttggaagaa
ccacatggaacacagaaactctacatgggaaacgcagtgcccccaactaaagtgacattt
gttggagataaggaacaaagcatgtggctaaaagaggttcagggtgtttcagagcattat
cagagaagaaaaggaataattattcatgagacatcagtagttgtgtatgctcagttactc
actggtaatagatatcagcttaaccagaatggccaagtttatttggagaagcagtggtca
aaacaagctcttccttttgtttaccaaactgttgtcaaggatatcaaagcctttgactct
cgcttttcgaacatcagaactttggatgatttatttccacctggcagtacagcctttatg
ctgggatctccatactatggctgcatgggagaagttcaagattcacgtgatgtgatacca
gaaggtagaattcgtgtagttttcagtattccctgtgaacctcagctcgatcgtctaata
cagaatcagcataaatattctgtgaagtacaatcctgcatacattttggccagccgtctt
ggagtaagtggatatctagtctccagatttacagggagtatctttattggaagaggatca
aagaagaatcctcatggagatcacaaagcaaatgtggggctaaaccttaagttcaataag
aaaaatgaagaagttcctggctatactaagaaagttggaaatgaatggatgtattcttct
gcagttgaacaactacttgctgagtatttagaaagggtccctgaactgttcagttatata
gccaagaatagccaggaagatatattctatgaagatgacatctggcctggtgaggatgag
aatggagctgagaaagttcaagaaattgttgcctggttgaaggcacaccctgtctctgct
ttatctcgctcatcttgtgacttgcaaattttggatgcagctatcgttgagaaaattgaa
gaagaaatagaaaaatgcaagcagagaaagagcaacaagaaggtgcgagtaactgtgaaa
ccccatttgctgtatagacctttagaacagcagaatggagttgttccagatagagatgca
gagtataggctgtttgaccgtgttgtcaatgtaagagagaacttctctgtaccagttggt
cttcgaggtaccattataggaattaaaggagccagtagagaaacagatgtgctctttgaa
gttttgtttgatgaagaattccttggaggcctaactataaggtgctcacctgccagaggt
tatcgtctgccatcaagtgccttaattaacctgtctcatggtgttcggtcagaaatggga
aatcaaaaactgacggccatagttaaacctcagccagctgtgaataactacaattcgtat
gcatctgatctgtcatctgtatgctcacaaaaagtgcatctgggaggcctcaaccattcc
cctcgctccctttttgttcctactcaacagctgaatggaagacagcattacaatctcagg
gctgaaaatcaggggacctccaactcaccccacaaaggatcgtttctgagtagcaatcag
aaaaataaagcacagaataagcaagatgatgaattttgcagtatatggcaatcattgcag
ggttctgggaagtctcaccatgttcagcaaaacatccatgagaagggtgcagttctacct
caggaaatcaagctgggatctggcaatcagttctataagccaggcttcaatgatggcagc
tttagaagtcagcaaagaaaacaggagccatataaaaaatttaaagaagattccagattt
acaagaggtgaaagtcaaccccataataaaataccaaacaaacagaattttgcaggtgtg
aataagcacaatgtcaaacttctgaagagaaatgaaagtgtgcctgtaattcaaaaggct
gcaagtgatagtccctgtacaagtggaaaggacagtgaacttgaaagccttttagcttct
ttgaaaatttccaaagaaaatgaagtgcagacttcttccaaggaagcaagagctacaaat
gaagaacatttatcaccgcaatcatttgcaatgaaaggaacacagatgctcaaggaaatt
ttgaagatagacggctctgacctggaaacaaggaatgaagcgaaatcccacgttaacgat
gttcctgcttcccctggtagacaggattgccatggagctgcattgcagtatagacaaaca
aaaaaaatggctgcttatatgaacaatcctcatagcactggaggccctcagagtacacca
gcattgggaactggaggtcacccttttgttggtccacagcctacgttgtctactcctgtt
tctgaactttctcgtatttgttctcttgttggaatgtcacaacctgatttctctttcata
aaaacaccacagactatgaccgtttgtcacataaaattatccaatggattgttggttcat
ggaccacagtgtcattctgaagctgaagcaaaggagaaagctgcactttctgctttacag
cgtttgagctctgtaggagttaacttgccttttcctccaccggtgtttccaaattatcag
ccactaggagttcctgtgccacctggatctcttcctccagtcttttcacagccccctgct
aatataatgcctccatcatctcacatgtttggtccagtgtcctggggaacgccagtgcct
attcatggcaaacactattatcctggttcctatccaggaaatgtgtctcttgcaggaact
ataccagttggttctcacaaccagttcatacctctacaggtaactaaaaaaagggctgct
agcaagaaaaactttgagttcaaggagtttcagagttcccctcaagctgcaccactaaag
aatgaacagccagtgtcttctgaccacattcagcaagatagttcttcagctcctttaaaa
tctcctcaagctgctcagtctactgtttcatttcaagacaatgcggctactccaagcgtt
cctcgtaacaaatcagcaccaaatacttccagcaagcgaaagccaagaaagttggctgtc
aattttggcacaccaaaatctgcagaataa
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integrated database retrieval system
