Gallus gallus (chicken): 427050
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Entry
427050 CDS
T01006
Symbol
VPS13A
Name
(RefSeq) vacuolar protein sorting-associated protein 13A
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
gga
Gallus gallus (chicken)
Brite
KEGG Orthology (KO) [BR:
gga00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gga04131
]
427050 (VPS13A)
Membrane trafficking [BR:
gga04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
427050 (VPS13A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
RRM_fung
Spo16_N
Motif
Other DBs
NCBI-GeneID:
427050
NCBI-ProteinID:
NP_001264765
CGNC:
11289
Ensembl:
ENSGALG00000015170
LinkDB
All DBs
Position
Z:37613751..37719217
Genome browser
AA seq
3193 aa
AA seq
DB search
MVFESLVVDVLNRFLGDYVVNLDSSQLKLGIWGGAVALKNLEIKENALSQLDVPFKVKAG
HIGQLNLQIPWQNLYTQPVEAVLDGVYLLIVPTASIKYDAEKEAKQLMEARQRELQRIEE
AKQKIADQDKVKEEKQDTFVEKLVTQVIKNLQVKISNIHVRYEDDITNRSNPLSFGISLQ
NLSLQTSDKNWNPCLHDESAKLFYKLVRLDNLFAYWNVKSEMFYHYGYNESLVSLKQGVA
CHNVIPVGYDFVFRPISAEAKLLMNPRSDIDFSTPKMDLDINIKDVAVEFNKPQYFSVME
LLESIDMMTRNLPYRKYRPDVPLHNNAKIWWKYVIYGILEVNVQRKLQMWSWEHIRHHRN
QVKNYKELYRTKIISKKPNEEILKSLEEFEKVLDIFNITLARQQAEVEATKSGCKIYKPG
TKQDDENSGGWFSWIWGWSREDKDEQKQEVKASSLQGLMTSEEKAKLYAAIGYSETAVDP
TLPKSYEAMKLSVNLKSMSASIRENNQTPELVKFSLNELSTVFTQRPGAQAIRFETKITS
LEVTGMSQENCTPCLLSSRTVYSDNSTSLLSIMFETNPLDEGADQRLRIESQPLEIIYDA
RTINSLVDFFRPPKDVHLEQLTSATLMKLEEFREKTSTGLLYVIETQKVLDLKINLMASY
IIVPQKGFYDCTSNLLLLDLGSLKMKSKSRSDISGLKVGQSTIEDIMSRAYESFDIQLTS
IQLLYSKHDENWQEARKLKYSSQHILQPLDVKVEFGRAMVVTDARMPKFKLSGQLPLLSV
QISDQKLKSILELVDSIPKAESTPATSSPPKITEAAMSPVLSAPHLSQLPVLDLPSFAES
ESEEEFYDALSSPVDDVPFFEAPSGSLKRASSTRRKKLNKQESLKNMTELQLRFEVAKVL
IKLCRLTDNTETPVLQLDVVGLGTELKLRTFDMTASAFLHEICLLCPEYMDDNDKPVYLV
TTLDNVEDDLLTLEYIKADINGPELKTAYQNVLQKIKVNFSSLDVHLHTETLLNAVNYLN
SLLPKQETKVAEEPVHEKTEDKKDVLKKLTSKKSKYDDVIDLNIWADLSCLRIFIREKKH
RIAEIHIEGLDSQVIMKKTATEITAKLKNIVIVDSDEMALYNKPLYITGNEVFNFKMISY
VNATDGIAYTNMDVVDNRVYLTVGCIQVVFVNKFFSSILAFINNFQAAKEALTEATVQAA
EKAATGVKELAERSSRLALDINIKAPVVIVPQSAVSANVLVADLGLITVKNRFFIAKTKT
RYNLPPVVDSMTVKLSELKLYRSCYEQNAFQTEVQLLQPLNLEVAVERNLAAAWYNEVPD
IEISGRLKPMNLILSQEDITTILRTLNENIGESSGASPPSQELKDTTSHCSDIRSTSEHS
AGVTVVTSAVVELHSPVKIKTTLKLDFRFDSLTLVLYNSNSKQGTNLDQRDDLLKLAEFK
LVLMSAAVKMLSDGSMNASVKLANCTLDDKRQAIDKATPRMVEMKHGFEKKVMMDISYKQ
GRDGTVLDMIVQEIYLCASMEFLLTVADIFLKANAESAAAQRNLRQSLPLKEQAPLQPVS
TMEMNIIVKNPEIVFVADLTRSDAPALVVTSQCEVFIKNSPERYSMTAAVKEIQVKACPF
LPEKRKGNVTTVLQPCDFFFEMKQSGNNPQSADLMIKSLTVKVSPIIINTVITITSALYR
TAETTEEEISQIPPGLWNTKDLNDLKLWFLEESNESEDTNPVTELVPTGQLLKMSIESVV
LTLEAGVGHRTVPMLLAKSSFLGEVKNWSTLINLHSQLELEVHYFNEMFGVWEPLLEPLE
IEKTDLFKPWVLEIKMKKKAKKTLVESDAEEENYKVPEYKTVISVSSKDQLNITLSKCGL
QMLSNLGTAFAEAASQTSDIFKKDQAPFVLINSLGLAITVLPSDSFSVLNVEFGAKIFNL
KDGETLNMEYVRTKSESEQFTAMTTLSSKRFYIQICPHNHSTVEKIPLTKVGRCIYRVRH
EESGVERSIVCQIDTVEGSKMITIRSPVQIRNHFSIPFSVFDEGRCLGTASPENEFNIPL
SSYRSILSLLPIANENGVDGEYDMCEGITFDEIMKNVDSLLQRKCQSVRSTNHSLIINIV
IVKDTLTSSLCSDDQWDFPYVVHLWPSVLLHNLLPYHITYSVEGNGNKWDTLQDGCSAQI
HNAVLDQTKLDLQLLNYLDQNWKSEYHIKSNLPDISFITFYCITELDKTELDIAVHVTYS
IGQMIIAIHSPYWMVNKTGRMLQYKADGIHRKHPPDYKKPLLFSFQPKNFLQNNKVQLMV
TDSELSDQFSLDTVGSHGSVKCKSHKKDYQVGVTINNSSFNITRIVTFTPFFMISNRSKY
TLEVAEEGKEKWIPIVLQQCIPFWPENDANKLLVRVENSNLPPKKINFDKQENCLLLHLD
NKLGGITVDVNLTEHSTVITFSDYHDGAAPFLLINHTEEEIIEYGQSSLSELEGCLQPKK
AVLYTWADPAGSRKLTWKCGKRTEEITPKEDKIEVLSLDCRKVLYLVSFFEGLQRIVLIT
EDKNVFKLAYQSVQAELAEQEIILSLQDVGISLVNNYTRQEVSYIGITSSDVVWETKPKK
KSRWKPMSVKQTDKLEQEFKEYSELTPSENKTVELEPNVLVCLTPSGNDMKIQQPNEIPI
RRNYLPALKVEYSSSAHQKSFRIQIYRIQIQNQIPGAIFPFVFYPIKPPKSITLDSAPKP
FTDVSIVMRTAGHSQISHIKYFKVLIQEMDLRLDLGFLNALVEFFTQADIPNVQQLELFK
KDVESLQEELMSVSSMDTSQISLYEYFHISPIKLHLSFSLSTGGEDSNKEERKKELIPLQ
SLNLLLKSIGATLTDVQDVLFKLAFFELNYHFCTTQQLQSAVTKHYSKQAIKQMYVLILG
LDVLGNPFGFIRGLSEGVEAFFYEPYQGAIQGPEEFIEGMALGLKALVGGAVGGLAGAAS
RITGAMAKGVAAITMDEDYQQKRREAMNKQPTGLREGITRGGKGLVSGFVSGITGIVTKP
IRGAQKEGAAGFFKGVGKGLVGAVARPTGGIIDMASSTFQGIKKVADSSEDVVSLRPPRF
FGEDGVIRPYRLRDGTGSQMLQKIENGRFAKLRYIAHAMVNSTDLLMVTKSGVLFVTKGT
FGQLTCEWQYTYDEFTKEPFIVDGRRLRIEAKERVKSVFHAKEFGKIINFKSPEDAKWIL
SKLEEVRENRPKS
NT seq
9582 nt
NT seq
+upstream
nt +downstream
nt
atggtgtttgaatcgctggtggtcgacgtcctgaaccgcttcctcggcgactacgtggtg
aacctagacagctcccagctgaagttgggcatctggggaggagctgtagcgctgaagaat
cttgaaataaaagaaaatgcactgagtcagctggatgtgccatttaaagttaaagcagga
catatcggtcaacttaacctacagattccatggcaaaacctttatactcaacctgttgag
gcagttcttgatggagtttacttgcttattgtgcccacagccagcataaaatatgatgct
gaaaaagaggccaagcagctcatggaggcaaggcaaagggaattgcaaaggatagaggaa
gcaaagcagaaaatagctgaccaagataaagtgaaagaagagaaacaagacacttttgta
gaaaaactagtcactcaggtcatcaaaaatcttcaagtgaaaatttccaacatccatgtt
cgctatgaggatgatatcacaaatcgaagtaaccccttgtcatttgggatttcacttcag
aacctaagtttgcagacctcagataagaattggaatccatgtttacatgatgaatctgcc
aagttattctataagcttgtacgactggataacctttttgcttactggaatgtgaaatct
gagatgttctatcattatggctataatgaatcattggttagcttgaaacagggagttgcc
tgccacaatgtgattccagttggttatgattttgtattccgccctatttctgctgaggcc
aaacttcttatgaatcctcgatctgacattgatttctcaactccaaaaatggatttagat
ataaatataaaggatgtagctgtagaattcaataagccacagtacttcagtgttatggag
cttcttgaatctattgatatgatgactcgaaatttgccatataggaagtacaggcctgat
gttccattgcacaacaatgccaagatatggtggaaatatgttatttatggcatccttgaa
gtaaatgttcaacgtaagctccaaatgtggtcgtgggaacacattcggcatcataggaat
caagtgaagaactataaggagttgtacagaacaaagataatatcaaaaaaacctaatgaa
gaaatcttaaaatcattggaggaattcgaaaaggtccttgatatttttaacatcacactt
gcaaggcaacaagcagaagttgaggcaactaaatctggatgcaaaatatacaaaccagga
acaaaacaagatgatgaaaattctggtggctggtttagctggatttggggctggtcacgt
gaagataaggatgaacagaaacaagaagtgaaggcttcaagtcttcaaggtcttatgaca
agtgaagagaaagctaaactttatgcagcaattggatatagtgaaacagctgtggaccca
acacttccaaaatcatatgaggccatgaagttgtctgtaaatttaaaaagcatgtcagca
tcaataagagaaaacaaccaaactcccgagttggtaaaattttccttaaatgaattgagt
acagtattcactcaacgacccggtgcacaagcaataagatttgaaaccaaaataacttcg
cttgaagttacaggcatgtcccaagaaaactgtacaccctgtcttctgtcttctcgaaca
gtctattcagacaatagtacctcactgttaagcataatgtttgagactaatcctttggat
gagggggcagatcagaggcttagaatagaatcacagccactggaaataatatacgatgca
agaacaataaacagcttagtggatttcttcaggcctccaaaagatgtacatttagagcaa
ttgacatctgcaactctgatgaagcttgaagagtttcgtgaaaaaacatcaacaggtttg
ttgtatgttattgagacccagaaagttcttgatctcaaaatcaacctcatggcatcatac
atcattgttccacaaaagggattctatgactgtacttcaaatctacttcttttggatctt
ggtagtcttaagatgaaaagcaaaagtcgttctgatatatcaggacttaaggtgggacaa
agcactattgaagatattatgtcaagagcttatgagagttttgatatccaactcaccagt
atacaactactctacagcaaacatgatgagaattggcaagaagctcgcaagctgaaatac
tcatctcaacatatcttgcagcctttggatgtaaaagtggaatttggtagggctatggtt
gtcactgatgcaagaatgcccaagttcaagctgtctggacagctgcctttactttctgtc
caaatatcagaccaaaagctgaaaagtattttggaactagttgatagcattcctaaagca
gaaagtactcctgctaccagctctcctccaaaaataactgaggctgcaatgtcgcctgtg
ctctccgcaccgcatttatcacagcttcctgttttggatcttccttcatttgcagagtca
gaatcagaagaagaattttatgatgctctaagcagtcccgtggatgatgtgccatttttt
gaagccccgtctggttccctcaaacgagctagcagcacaaggcgaaaaaaactaaataaa
caagaatctttgaaaaatatgacagaactccaactgaggtttgaagtagctaaggtcttg
ataaaactatgccgtcttactgacaatactgagactccagtgctgcagcttgatgttgta
gggttaggaactgaacttaaattaagaacatttgacatgactgcaagtgctttcctgcat
gaaatttgtctactgtgtccagagtatatggatgataatgacaaaccggtttacttagtt
actactttggataatgtagaagatgatcttctcactctggagtatataaaggctgatatt
aatggaccagaattgaagactgcctatcagaatgttctacagaaaataaaggtaaacttt
tcatctcttgatgttcatttgcatactgagactctcttgaatgctgtgaactatctgaac
agtcttctacccaagcaagaaactaaagttgcagaagagccagtccatgaaaaaacagag
gataaaaaggacgttcttaaaaaattaacatcaaaaaaatcaaagtatgatgatgttatc
gacctcaatatctgggcggatttatcctgtttgcgcatctttattagagagaaaaagcac
agaatagctgaaattcacattgaaggtctggatagccaagtgatcatgaaaaaaacagca
acagaaataactgcaaaactaaagaacattgttattgtggattctgatgagatggcattg
tataacaagcctctttacatcacaggaaatgaagtcttcaacttcaagatgatatcttac
gtaaatgctaccgatggtattgcatacacaaatatggatgttgttgacaatcgtgtttac
ttaactgttggttgtattcaagtagtttttgtcaacaaattcttttcttctattttggct
tttataaataattttcaagctgccaaggaagctcttactgaagcaacagttcaagcagca
gagaaagcggctacgggtgtgaaagagctagcagagcgtagttctcgtttggcactagat
atcaatattaaagcacctgttgtgatagttccacagtcagcagtttctgcaaatgtcctg
gtggctgatcttggtctaattactgtaaagaaccgattctttattgctaaaacaaagact
cgatataatctcccacctgttgttgactctatgacggtgaaattgagtgaactgaaatta
tacaggtcatgctatgagcagaatgcttttcaaactgaagtacagctgctgcaaccactc
aatctggaagtagctgttgaacgaaatttagctgctgcatggtataatgaagttcctgat
attgaaatatctgggcgactcaagcctatgaatctaattctcagtcaggaggacattaca
acaatactgaggacactaaatgaaaatataggtgaaagctcaggagcatcaccaccttca
caagaactgaaagatacaaccagtcattgtagtgatattcgcagtacttctgagcactct
gcaggtgtaactgttgtgacatcagctgtggtggaattgcattcgcctgtgaaaataaaa
acaacattaaaactggatttcagatttgactcgttgactttagtgctatataattcaaat
tcaaagcagggtacaaatttggatcagagggatgatcttttaaagcttgcagagtttaag
ttggtgttgatgtcagctgctgtgaaaatgttatcagatggctcaatgaatgcttcagtc
aagttggcaaactgtacattagatgataaaagacaggcaatcgacaaggctacaccaagg
atggtggaaatgaagcatggatttgaaaagaaagtcatgatggatataagctataagcag
gggagagatggcactgttcttgacatgattgttcaagagatatacctttgtgcaagcatg
gaatttctacttacagttgcagatatattcctaaaagctaacgcagaaagtgctgctgca
cagagaaatctcaggcagtccttacctttaaaagagcaagcacctctgcagcctgtatct
acaatggaaatgaacattattgttaaaaatccagaaattgtgtttgtggctgatttaaca
agaagtgatgctcctgctttggtagttacatcacagtgtgaggtcttcattaaaaatagc
cctgaaaggtacagcatgacagctgctgttaaagagatacaagtgaaagcatgcccattt
cttccagaaaaaaggaaagggaatgtaactacggtattacagccttgtgacttcttcttt
gaaatgaaacagtctggtaataatccacagtcagctgatctaatgattaaatctctaaca
gtaaaagtttcgccaataatcataaatacggtaataactattacgtccgccctttatcga
actgcagaaacaacagaagaagagattagtcaaattcctccaggcttgtggaatacgaaa
gatttaaatgatctaaaattgtggtttcttgaagagtcaaatgaaagtgaagacactaat
ccggtcactgaactggttcccacagggcagttattgaaaatgagtatagaatctgttgtt
cttacacttgaagctggggttgggcaccgaactgtaccaatgctcttagccaagtcctca
tttcttggagaagtcaaaaactggagtaccctgatcaacctacattctcagcttgagcta
gaggtgcactattttaatgagatgtttggagtgtgggaacctctacttgagccactggaa
atagagaagactgacttatttaaaccatgggttcttgaaatcaagatgaagaagaaagct
aaaaaaacattagtagaatcagatgcagaagaagaaaactacaaagtgccagaatataaa
acagtaataagtgtttcctcaaaagaccagctgaatattacgttatccaaatgtggactg
caaatgttgagtaacttgggaacggcatttgctgaagcagctagtcaaacttcagatatc
ttcaaaaaagaccaagcaccatttgtactaataaattctttagggcttgccatcactgtc
ttgcctagtgattctttcagtgtcctcaatgttgaatttggagcaaaaatatttaattta
aaagatggagagactttaaatatggaatatgtcagaactaaaagtgagagtgaacagttc
acagcaatgacaaccctgagtagcaaaaggttttatattcaaatctgtccacataatcat
tctactgtcgagaagattccgctgaccaaagtgggtcgatgtatttacagagtaagacat
gaggagtcaggtgttgaaaggtccattgtctgccaaattgatactgttgaaggaagcaag
atgataactattcgttctcctgtccagataaggaatcatttttcaattccgttcagtgtt
tttgatgaaggaagatgtcttgggactgcgtcaccagagaatgaattcaacataccattg
tcctcatacaggtcaatactgagtttgctacccatagcaaatgaaaatggagtggatgga
gaatatgatatgtgtgaaggaattacttttgatgaaattatgaaaaatgttgacagctta
ttacaaaggaaatgccagtctgtgaggtcgactaaccactcacttatcatcaatattgtt
attgtaaaagacacattgacatcttcattatgttcagatgatcagtgggattttccatat
gtcgttcatttgtggccttctgttcttctgcacaatcttcttccttatcacataacttac
tctgtagagggaaatgggaacaaatgggacactctgcaagatggatgttcagcccaaatt
cataatgcagtcttggatcaaacaaaactagatttacagttgcttaattatcttgatcaa
aactggaaaagcgagtaccatataaaaagtaacttaccagatatcagcttcataacattt
tactgcatcacagagttggataagactgagctggacattgctgtccacgtgacatactca
attgggcaaatgattatagcaattcacagcccatactggatggtaaacaaaactggtcga
atgctgcaatacaaagctgatggtattcaccgcaagcatcctccagattacaaaaagccg
ctgctgttttctttccagcccaaaaacttcctccaaaataacaaggttcaacttatggta
acggacagtgagctgtctgatcagttttcactggacactgttggaagtcatggttcggtg
aaatgcaagagtcataaaaaagattatcaagtcggtgtcaccataaacaacagcagtttc
aatattactagaattgtaactttcactccattttttatgatctcaaatagaagcaaatac
actttggaagtagctgaagaaggcaaggaaaagtggataccaattgttttgcaacagtgt
attcccttttggcctgaaaatgatgccaacaaactgcttgtcagagttgagaattctaat
ctcccaccaaagaagataaattttgataagcaagaaaactgtcttttattgcatttagac
aacaagcttggagggattacagtggatgtcaacttgactgaacattctacagtgattacc
ttttctgattaccatgatggcgcagcaccatttctgttaataaatcatactgaagaagaa
attattgagtatggacaaagttccctcagtgagttagaaggctgtcttcagccaaagaag
gcagtgctgtatacttgggcagacccagctggatctagaaaattgacatggaaatgtgga
aaaagaactgaggaaattacaccaaaagaagacaaaatagaagtactcagcctggactgt
agaaaggtgctctatttagtatcattttttgaaggtttgcagcgtattgttctaatcact
gaagataagaatgtatttaaattggcttatcaaagcgtacaggcggaactagcagaacaa
gaaattattctgtctttacaagatgttggaatttcattggttaataattatacaaggcag
gaggtgtcctacataggaattacaagttctgacgtggtctgggagacgaaacccaaaaag
aagtctagatggaaaccaatgagtgttaagcaaacagataagttagaacaagaattcaaa
gaatacagtgagctaactccatcagaaaataagactgttgagttggaaccaaacgttttg
gtgtgtttaactcctagtggaaatgacatgaagattcagcagcccaatgagattcctatc
agaaggaattacttgccagctttaaaagtggagtacagttcatcagcacatcagaaatct
ttcagaattcaaatttacaggatacaaatacaaaaccagattcctggagccatatttccc
tttgtgttctatcctattaaacctccaaagtccatcaccttggattcagcaccaaaacca
tttactgatgtcagtattgttatgagaactgcaggacattcacaaatatctcatattaaa
tactttaaggtcctgattcaagagatggatctcagattagaccttggcttcctgaatgca
ctggttgagttttttacacaggctgacataccgaatgtccaacagctggaacttttcaaa
aaggatgtagaatctcttcaggaagaactgatgagtgtgtcatccatggatacatcacaa
atcagcttgtatgaatatttccatatctctccaattaagttacacttaagcttttcactt
agtactggcggtgaagatagtaacaaagaagaaagaaagaaagaactgataccacttcag
tccttgaacctccttctgaagagcataggtgccaccctcacagatgtgcaagatgttctc
tttaagttggcattttttgaactcaactatcacttctgtactacacagcagctccaatca
gcagtgacaaagcattattcaaaacaggctattaagcagatgtatgttcttattcttggt
cttgatgtcttgggcaatccatttggattcataagaggcttatctgaaggagtagaagca
tttttctatgaaccttatcagggagccatccagggtcctgaagaatttatagaaggaatg
gcactaggacttaaagcactagtagggggagctgttggtggattagctggtgctgcttca
agaatcactggtgctatggcaaaaggtgttgctgcaataacaatggatgaggattatcag
caaaaaaggagagaagccatgaataaacagcccactggtctgagagagggtatcactcgt
ggaggaaaaggattagtttctggttttgtcagtggcataacaggaatagttacaaaacca
ataagaggagctcagaaagaaggagcagctggttttttcaaaggtgttggaaaaggatta
gtgggagcagtagctaggccgactggaggaatcatagacatggcaagcagcacatttcag
ggtattaaaaaagttgcagattcatcagaagatgtggtaagcctacgcccgcctcgcttc
tttggtgaagatggtgttattagaccttacagattaagagatggaactggaagtcaaatg
ttacagaaaattgaaaatggacgatttgcaaaactcagatatattgcacatgctatggtc
aacagtacagatctgctaatggtgacaaagagtggtgtcctatttgtgacaaaagggaca
tttggacagttgacatgtgagtggcaatacacttatgatgaatttacgaaagaaccattc
attgttgatggcaggagattacgcattgaagcaaaggaacgagtaaagtctgtgttccac
gccaaagaatttggaaaaattattaactttaaaagtccagaggatgctaagtggatcctt
tctaaactggaagaagtgagagagaatcgaccaaaatcataa
DBGET
integrated database retrieval system
