Gallus gallus (chicken): 427137
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Entry
427137 CDS
T01006
Symbol
SKIV2L2
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
gga
Gallus gallus (chicken)
Pathway
gga03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gga00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
427137 (SKIV2L2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gga03019
]
427137 (SKIV2L2)
03041 Spliceosome [BR:
gga03041
]
427137 (SKIV2L2)
03009 Ribosome biogenesis [BR:
gga03009
]
427137 (SKIV2L2)
03016 Transfer RNA biogenesis [BR:
gga03016
]
427137 (SKIV2L2)
Enzymes [BR:
gga01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
427137 (SKIV2L2)
Messenger RNA biogenesis [BR:
gga03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
427137 (SKIV2L2)
Spliceosome [BR:
gga03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
427137 (SKIV2L2)
Complex C
U4/U6.U5 tri-SnRNP related factors
427137 (SKIV2L2)
Ribosome biogenesis [BR:
gga03009
]
Eukaryotic type
Pre-60S particles
Helicases
427137 (SKIV2L2)
Transfer RNA biogenesis [BR:
gga03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
427137 (SKIV2L2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
AAA_22
nSTAND3
Motif
Other DBs
NCBI-GeneID:
427137
NCBI-ProteinID:
NP_001012962
CGNC:
10905
Ensembl:
ENSGALG00000014709
UniProt:
Q5ZMQ1
LinkDB
All DBs
Position
Z:16761354..16805892
Genome browser
AA seq
1029 aa
AA seq
DB search
MADAFGDELFSVFEGDAATARSKAGAAEAARRLGKPPEDKPSAAGLGKTRRDAEVDSSEG
AISGKKPKLEDVASEDNNLADLMPHVKVQAVETVEGCTHEVALPADEKFTGLKPRTGKPA
KEYPFSLDAFQREAILCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIKA
LSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVIFDE
IHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIYTDYRP
TPLQHYIFPAGGDGLRLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGGTKGPSN
VFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNAIDCLSD
EDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMPA
RTVLFTSASKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQLLK
GSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVVEKVNKLEEQYN
KIVIPNEENVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLVKVKNEDDDFGWGV
VVNFSKKSNVKPNSGELDPLYVVEVLLHCSKESLKNSATEAAKPARPDEKGEMQVVPVLV
HLLSAISSVRLYIPKDLRPIDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGIKDQGLKKV
IQKVEAFEHRMYSHPLHNDPNLETIYKLCERKAQIAMDIKAAKRELKKARTVLQMDELKC
RKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATALLSCFV
FQENSNEMPKLTEQLAGPLRQMQECAKRIARVSAEAKLEIDEENYLNSFRPILMDVVYTW
ANGASFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITKIKRD
IVFAASLYL
NT seq
3090 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcgtttggggatgagcttttcagcgtgtttgagggtgacgcagccaccgcc
aggagcaaagcgggtgcagctgaggccgccaggaggctgggaaagccgccggaggacaaa
ccgtcggcagctgggctggggaagaccagaagggacgctgaggtggacagctcagaaggt
gcgatttcgggaaagaagccgaaactggaagatgtcgcatcagaagataataatctggca
gacctgatgccacatgtgaaagttcaagctgtggaaactgttgaaggctgcacacatgag
gttgcacttccagcagatgaaaagttcacaggtctgaagccaagaactggaaaacctgca
aaagaatacccatttagtcttgatgcctttcagagagaagctattctgtgtgtagataat
aaccagtctgtattggtgtcagctcatacctcagctggtaaaactgtgtgtgcagagtat
gcaattgccttggccttgagagaaaaacagcgtgtcatatttacaagtccaattaaagct
ctgagtaatcagaagtaccgtgagatgtatgaagagttccaggacgttggtttgatgact
ggagatgtcaccattaatcctacagcttcttgtctggtgatgacaacagagatcttgaga
agtatgctctacagaggttctgaagttatgcgagaagttgcgtgggttatttttgatgaa
atccattacatgagagattcagaacgtggtgtggtttgggaagagacaattattttgctc
cccgacaatgttcattatgtgttcctttctgcaactattccaaatgctcgtcagtttgct
gaatggatttgccatcttcacaaacagccttgccatgtgatatatacagactatcgacct
actccactgcagcattatatattcccagcaggaggagatggactacgtcttgttgttgat
gaaaatggagatttcagagaagataattttaatacagcaatgcaagtgcttagagatgca
ggagacttagcaaaaggagaccagaagggcaggaaaggaggaacaaaaggcccttccaat
gtatttaagattgtgaagatgatcatggagaggaatttccagcctgtaatcattttcagc
ttcagtaaaaaggattgtgaagcctacgctcttcagatgacaaagttagatttcaataca
gatgaagaaaaaaagatggttgaagaagtgttcaataatgcaattgactgtctgtcagat
gaagacaaaaaacttcctcaggttgagcatgtgctgcctcttctgaagcgtggaataggt
atccatcatggtggtctgcttcctatcttaaaagaaaccatagaaattcttttctcagaa
ggcctaataaaggccttatttgcaacagaaacttttgctatgggaattaacatgccagcc
aggactgtgctgtttacaagtgcctccaaatttgatgggaaagatttccgatggatctcc
tcaggtgaatacattcaaatgtcaggtcgtgcaggacgccgaggtatggatgacagagga
atagtaattcttatggtggatgaaaaaatgagtccaacaattggcaagcaacttttaaag
ggttcagctgatcccttgaacagtgcattccacctgacctacaacatggtattgaacttg
cttcgagtagaagaaattaaccccgaatacatgttagagaaatcattctatcagtttcaa
cattacagagctattccgggagtggtagaaaaggtgaataaattggaagaacagtacaac
aaaatagtaattcccaatgaagaaaatgtggtcatatactacaaaatccgacagcagctt
gcaaaactgggtaaagagattgaagaatatattcacaaaccaaagtattgcttgcccttt
ctacagccaggaagactggtaaaggtgaaaaatgaagatgatgactttggatggggagtg
gttgttaatttctcaaagaaatccaatgttaagcctaattctggtgaattggacccgtta
tatgtagttgaagtgctactgcactgcagcaaggagagtctgaaaaattctgctactgag
gctgcaaagccagcaagacctgatgagaaaggagagatgcaggtcgtccctgttctggtg
catcttctgtcggccatcagcagtgtccgactgtacataccaaaagacctgaggcctatt
gacaacaggcaaagtgtgctgaaatctatacaggaagtacagaagcgatttcctgatggg
gtgccattattagatcctattgatgacatgggtatcaaagatcaaggactgaagaaagtc
atccagaaagtagaggcatttgagcataggatgtattcacatcctcttcataatgatccc
aatttggaaactatatataaactttgtgaaagaaaagcacagattgctatggatattaaa
gcagcaaagcgagaactaaaaaaggccagaaccgtcctacaaatggatgaactcaaatgc
cgcaagcgtgttctgagaaggctggggtttgccacgtcttccgatgtcattgagatgaaa
ggacgtgttgcctgtgaaatcagcagtgctgatgaacttctcctgacagaaatgatgttt
aatggtctcttcaatgacttatctgcagaacaggcaactgcactgctaagctgtttcgtg
tttcaagagaattccaatgaaatgccaaaactgacagagcagctggccggaccacttcga
caaatgcaggagtgtgctaaaagaatcgccagggtatcagcagaagcaaaactggaaatt
gatgaagaaaattacttaaattctttcagacccatactcatggatgttgtatacacgtgg
gcaaatggagctagctttgctcacatttgcaaaatgactgatgtctttgaaggtagcata
attcgttgtatgagaaggctagaagaattgcttcgacaaatgtgtcaggcagcaaaagca
attggaaacacagagctggaaaataagtttgcagagggtataacaaaaatcaagagggat
attgtgtttgctgcaagcctttacctgtaa
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