Gallus gallus (chicken): 428595
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Entry
428595 CDS
T01006
Symbol
PNLDC1
Name
(RefSeq) poly(A)-specific ribonuclease PNLDC1 isoform X2
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
gga
Gallus gallus (chicken)
Pathway
gga03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gga00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
428595 (PNLDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gga03019
]
428595 (PNLDC1)
Enzymes [BR:
gga01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
428595 (PNLDC1)
Messenger RNA biogenesis [BR:
gga03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
428595 (PNLDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
428595
NCBI-ProteinID:
XP_004935629
CGNC:
8836
Ensembl:
ENSGALG00000011624
LinkDB
All DBs
Position
3:complement(45677182..45688533)
Genome browser
AA seq
567 aa
AA seq
DB search
MRLRAPAPARQPNGRGGAERGVAQPHLSGACSAAAAMDVGAADFARCLPCLQDRVGRAAF
LGLDMEFTGLHSAFPQNNQPSLFDSPAERYQKVRQSVQRFTITQLGLAIFSEENSNKYVV
HSYNFFLFPSTLGVTDAELTLSTSSIQFLSHYGFDYNKFLKDGIPYMNELQENILSQRLL
EGNWKVCSALNLNVVKKAIDEVTCWIAAAKEGDTVILQDLSDSQMLDVQLVLRQALPNVW
TQPLGDNEVMVKKVSLQHRRLLESSSHDSCQKELILTSARGFTNLFQIIVRAKKPLVGHN
MLMDLCHLHDKFYNPLPESYEEFKKNIHHLFPVLIDTKTVTKSIWKNYQFPRVSNLLEVY
EVLCSDLNPVDPACPVIAFASDSARYAEKAAPHEAAYDAFLCGSVLLKSAHLLLCELTDD
AATANPSFSQYLTMLAEYFNKVNFIRGGVSSINFSGEDASCRYPPPLVVCVRGWPRLDER
QIYQELQPLCRFDIRRLSENQFILLSNRFKHVIRVLHDYKDHPKLQISVYRHWRHSPHVN
CLLKVSGIVALWSLLAFVLGGAPSCSP
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgcgcctgcgcgcgcctgcgccggcccggcagcccaacgggcgtggcggggcggagcgt
ggtgtggcacagcctcacctgagcggagcgtgctccgctgcggcagccatggatgtgggg
gcagcggacttcgcgcgctgcctgccctgcctgcaggaccgcgtcggccgcgccgccttc
ctgggcttggacatggagtttaccggcctacattcagctttcccacaaaataaccagccc
agcttgtttgactccccagctgagcggtaccagaaggtcaggcagagtgtgcagcgcttc
accatcacgcagctggggctagcaatattctcagaagaaaattcaaacaagtatgtggtg
cattcgtacaatttctttctctttccctcaactttgggagttacggatgctgaactcacc
ctctccacatctagcatccaattcctgtctcactatggctttgactacaataagttcctg
aaagatggaatcccatacatgaatgagttacaggagaatatccttagtcaacgtctctta
gagggtaactggaaagtctgcagtgctctgaacctgaatgtggtgaagaaggctattgat
gaagtgacctgttggatagcagcagccaaggaaggggacacagtgattctgcaggatctg
agtgattctcagatgcttgatgttcaactggttctgcgacaagccctcccaaacgtttgg
acacagcctcttggagacaatgaggtaatggtgaaaaaagtgagtctgcagcatcgtcgc
cttctggaaagctcttctcacgactcctgtcagaaagagctcattctcacatctgcccgg
ggctttaccaaccttttccagataattgttagagctaaaaagcccctggtgggacacaac
atgctgatggacctctgtcatctccatgacaagttctacaaccccctgccagaaagctat
gaggaatttaaaaagaatattcaccacctgtttcctgtcctcatagacaccaagactgta
acaaaatccatctggaagaactaccagtttcctcgagtatctaatcttctggaggtgtat
gaggttttgtgcagcgacctaaatcccgtggatccagcgtgtccagtgattgcttttgca
agtgactctgcacgatacgctgagaaggcagctcctcacgaggcagcgtatgatgcattt
ctctgtggctcagtccttctgaagtcagctcatttgctgctgtgcgaattaacagacgat
gcagcgacggccaacccttctttctctcagtatctcaccatgttagcagagtatttcaac
aaggtgaatttcatccgaggtggcgtctcgagcattaatttttctggggaggatgcttcc
tgccgatacccccctcccttggttgtctgtgttcgaggttggccacggctggatgaaagg
cagatctaccaggagttacagcctctttgtcgctttgatattaggcggctctcagagaac
caattcattttgctctccaatagatttaagcatgtcattcgtgttctgcatgattacaaa
gatcaccctaagctgcagatctctgtctatcgccactggaggcactctccacatgtgaac
tgcttgttaaaagtctctggtattgtggcactttggtctctgttggcctttgtgctcgga
ggagctccttcctgttcgccataa
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