Gallus gallus (chicken): 429138
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Entry
429138 CDS
T01006
Symbol
VPS8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
gga
Gallus gallus (chicken)
Pathway
gga04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
gga00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
429138 (VPS8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gga04131
]
429138 (VPS8)
Membrane trafficking [BR:
gga04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
429138 (VPS8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
zf_RING_Vps8
VPS8_N
zf-RING_Vps41
TPR_VPS8_2
WD40_CDC20-Fz
Clathrin
zf-RING_11
TPR_Vps41
zf_RING_Vps8_fungal
zf-RING_2
zf-RING_UBOX
Beta-prop_HPS5
WDR55
ANAPC4_WD40
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
429138
NCBI-ProteinID:
XP_015132650
CGNC:
5062
Ensembl:
ENSGALG00000006704
LinkDB
All DBs
Position
9:3627891..3699327
Genome browser
AA seq
1496 aa
AA seq
DB search
MSPMISFSPPAGSRSRRTRVRFRKRRPGAAALFPINRSVPSPPPLTYRRAAAPLTAARGG
RRCRAAHARSGGGSGRGFESRRRRPAHPAASRSPAMDAAPEDGPAGAEAEPDGLPCPEPP
APRLSVAELDRELDSRSELIDDKEFDIPQVDTPPTLESILNETDDEEESFVLEDPFLLNI
DNTDTHSYDTSSVASSDSGDRTHLKRKKKLPDSLSLHGSVIRLSLLKGISAQIVSAADKV
DAGLPTAIAASNLIAVGTSHGLALIFGKDQNQALRLCLGSTAVGAQYGAISALSINNDCS
RLLCGFAKGQITMWDLASGKLLRSITDAHPPGTAILHIKFTDDPTLAICNDSGGSVFELS
FKRVMGVRTCESRCLFSGSKGEVCCIEPLHAKVELRDHPITQYSLLAMASLTKILVIGLK
PSLKVWMTFPYGRMDPSSVPLLAWHFVAVQNSVNPMLAFCRGDVVHFLLVKRDDTGAIHV
TKQKQLHLHYDLINFTWINSRTAVLLDSVEKLHVIDRQTQEELETIEIPEVQLVYNSSHF
KSLATGGNVSEALALVGEKACYQSISSCGGQIFYLGTKSVHVMTLRSWRERIDHLLKQER
LTDALALAWSFYEGKAKAVVGLSGDTSKRKAVIADRMVEILLHYADRTLKKCPDQGKIQV
MEQHFQDVVPVIVDYCLLLQRTDLLFNQIYDKMSENSVAKGIFLECLEPYILSDKLMGIT
AQVMKDLLLHFQDKNRLENMEACIVHMDITSLDIQQVVLLCWENHLYDAMIYVYNSGMND
FISPMEKLLKVIAPPLDAGKSLTDEQVVMGNKLLVYISCCLAGRAYPLGDIPEDLVPLVK
NQIFEFLIRLHSTEGSVDEEVYPHIRTLLHFDTREFLNVLALTFEDFKNDKQAVEYQQRI
VDILLKVMVENSDFTPSQVGCLFTFLARQLAKPNNTLFVNRTLFDQVLEFLCSPDDDSRH
SERQQVLLELLQAGGIVQFEESRLIQMAEKAEFYQICEFMYERELRYDKIIDCYLRDPVR
KEEVFNYIHNILSMPGYSAEEKQSVWQKALEHIEELLLLSPCKAADLVAIHFTEQIESII
ANLQDQFLLFQFLRSLLDPREGINQDLLHLPPHVTEQFIELLCQHSPEHVLETLKVLEYC
RLEETIQITQKHQLHEASSYLLEKKGDIHGAFLVMLERLQSKLLMLTQDDGGSAELPLLE
GIEDTLMKTIALCQRNSHNLNQQQREALWFPLLEAMMSPQKLSGSSQYRYAESLKSLTMQ
VLNNMAAFIPLPLILQRILQDPVYGKGKLGEIQGLILGMLDTFNYEQTLLETTTNLLNHD
LHWSLCNLRASVTRGLTPKQDYCCICLQQYKRRQESADEIIVFSCGHLYHSLCLLSKECG
AVSKDVMRWMCYKCNLSNKGGKLSENFSELKKGSGTSLAQTGSESALDPQQIQAFDQLCR
LNRGTSRLALLTELSRAHGGEKHGLLSVSHGDSAASSVFQDETFQLHLAPPPLMDD
NT seq
4491 nt
NT seq
+upstream
nt +downstream
nt
atgtccccgatgatttctttctctccccccgcaggctcacgttctcgccgcacccgagtc
cggtttcgcaagcgccgtcccggggcagctgcgctcttcccaataaaccgctccgtgcca
tcgcctccgcccctcacttaccgccgcgcagcggcccctttaacggcggcgcggggaggg
cggcggtgccgtgctgcgcatgcgcggagtgggggcggctccggtcgcgggttcgagtcc
cggcgccgccggcctgctcaccccgccgcgagccgcagcccggccatggacgcggcgccg
gaggatggccctgcgggagctgaggctgagccggacgggttgccctgcccggagccgccc
gcgccccgcttgagcgtggcggagctggaccgcgagctggactcccgcagcgagctgatc
gatgacaaagagttcgacatccctcaagtcgataccccgccaacgctggagagcatcctg
aacgagactgatgatgaagaagagtctttcgttttggaagatccctttctcttgaacatc
gataacacggatacgcactcctatgacacatcttctgtagcaagctctgacagtggggac
aggacgcacctgaaaaggaagaaaaaactcccggattctctctctctgcacggatcggtt
ataagactctcgctgctgaaagggatttctgcccaaattgtatctgcagctgacaaagtg
gatgctggtttgcctactgcaattgcagcatcaaatctgatagcagtggggacttctcat
gggctagcgctgatttttggaaaagatcaaaaccaggctctacgactgtgtctgggcagc
actgctgttggggcccagtatggggctatctctgctctcagcatcaacaacgactgctcc
aggctcctgtgtggctttgcgaaaggacagattacaatgtgggatctggccagtgggaag
ctgctacgatcaataacagatgctcaccccccaggaacagccattttgcacattaagttt
acagatgacccgacacttgcaatttgcaacgacagcggtggctccgtatttgaactctca
tttaagagggttatgggagtgagaacgtgtgaatctcgatgtctcttcagtggctccaag
ggggaggtttgttgtattgaaccactacatgcaaaggttgaactgagagaccatcctatc
acccagtattcgctgctggccatggcctcgctaacaaagatactggttattggcctgaag
ccatctttgaaagtgtggatgacctttccctacggtcgtatggacccttcgagtgtcccc
cttctggcgtggcactttgtggctgtccagaactcagtgaaccccatgcttgcgttttgt
agaggtgatgtcgttcattttcttctggtaaagagggatgatactggtgcaatacatgtc
actaagcaaaagcagctccatcttcactatgacctcatcaactttacttggataaactca
cgaacagcagtgcttctggacagtgtggagaagctgcatgtcatagatcgtcagacacag
gaggagttggagaccatagagattccagaagttcagctggtctacaacagcagccacttc
aagtccctggctacgggaggcaatgtcagcgaggcactggcattggttggagagaaagct
tgttatcagtccatcagcagctgtggtggccagatcttttacctggggactaagtcagtt
catgtcatgacattgaggagctggagagagagaattgatcaccttctgaaacaagagcgt
ctcactgatgccctggctcttgcttggtccttttatgaagggaaagctaaggctgtagta
ggcttgtctggggacacgagcaagcggaaagcagtcattgcagacagaatggttgagatt
cttctccattatgctgatcggactttaaagaaatgccctgaccaaggaaaaatccaggtt
atggagcaacactttcaggatgtagtgcctgtcatagtcgattactgcctcttgctccag
cgcacggatctattgtttaaccagatctatgataagatgagtgagaattctgtagccaaa
ggaatcttcctggagtgcttggagccctatatcttaagtgataagctgatgggaatcaca
gctcaagtgatgaaggacttgcttcttcacttccaagacaagaacaggttggaaaatatg
gaagcctgcattgtgcatatggatatcaccagcctggacatacagcaggtggtccttctg
tgctgggaaaaccatctctacgatgccatgatctacgtctacaacagcggaatgaatgac
ttcatcagtcccatggagaagctgttgaaagttattgctccgccactggatgctgggaag
tctctcacagatgagcaggtggtaatgggcaacaagctgctcgtgtatataagctgctgc
ttggcaggccgtgcatatccattgggtgatattcctgaagatctggtacctctggttaaa
aatcagatctttgagtttctcatccggttgcattcaacggagggatctgtggatgaggag
gtctaccctcacattcgtaccttgctgcactttgacactcgggaattccttaatgtcctt
gctttgacttttgaagacttcaagaatgacaagcaagctgtggaatatcaacagcgcatt
gtggacatacttctgaaagtcatggtagagaattctgacttcaccccatcgcaagttggc
tgtctctttacattccttgcccgtcagctggccaagccaaacaacacactgtttgtgaac
agaacgctttttgatcaggtccttgaatttctatgcagtccggatgatgactcccggcat
tcagagaggcaacaggtcctgttagaactgctgcaggcaggagggatagtgcagtttgaa
gagagccgtctgatccaaatggcagaaaaagctgaattctatcagatctgtgagttcatg
tacgaacgagagcttcgctatgacaaaatcattgactgttacctgcgtgatccagtgaga
aaggaagaagttttcaactatattcacaacatcctgtccatgcctggctacagtgctgaa
gaaaagcagtcagtgtggcagaaagctttggaacatatagaggagttactgctactcagc
ccatgtaaagcagctgacttggtggccatccacttcactgagcagattgagagcatcatt
gcaaaccttcaggaccagttcttactcttccaatttctaaggagtctgcttgatccgaga
gaaggcatcaaccaagacctgctgcacctaccgccccacgtcacggagcagttcatcgag
ctgctgtgtcagcacagccctgaacacgttctggagacgctgaaagtcctggagtactgc
aggctggaggaaaccatccagataacccagaaacatcagctccatgaagcttcctcatat
ttactggagaagaagggagatatccatggtgcctttctggttatgctcgagcgattgcag
agcaagttgctaatgcttacacaagatgatggaggttcagcagaactccccttgctcgaa
ggcattgaagataccctaatgaaaacaattgccctttgccagaggaattcacacaactta
aaccagcaacagcgagaggccctctggtttcccctgctggaggctatgatgtccccacag
aaattgtctggctcctcacagtaccgatatgctgaatccttgaagagtttgacgatgcaa
gtgctgaacaacatggctgcatttattcctcttcctttgatcctgcagagaatcctacag
gatccagtttatggaaaggggaaacttggagaaattcaaggtctcatcttgggaatgctg
gacacattcaactatgaacaaacccttttagagacaaccacgaaccttctaaaccatgat
ctccactggtccctgtgtaacctaagagcttctgtcacgagagggcttaccccaaagcag
gattactgctgcatttgtctacagcagtacaaaaggaggcaggaaagcgctgatgaaatc
attgttttcagctgtggccacttataccattccctgtgcctgctgagtaaggagtgtggg
gcagtaagcaaagacgtgatgcggtggatgtgctataaatgcaacttgagcaacaaggga
ggaaaactgagcgagaacttctcagagctgaaaaaaggaagtggaacctccttggcacag
acagggtcagagtctgcattggatcctcagcaaatccaggcctttgaccaactctgccga
ctcaaccgtgggacctcccggttagctctcctgactgaactgtcccgtgcccacggtggg
gagaagcatgggctgctcagtgtttcccatggggactccgctgccagcagcgtcttccag
gatgagaccttccagctgcacctggcccccccaccactgatggatgactag
DBGET
integrated database retrieval system
