Geobacillus sp. GHH01: GHH_c01210
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Entry
GHH_c01210 CDS
T02455
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ggh
Geobacillus sp. GHH01
Pathway
ggh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ggh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GHH_c01210 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ggh03021
]
GHH_c01210 (rpoB)
03400 DNA repair and recombination proteins [BR:
ggh03400
]
GHH_c01210 (rpoB)
Enzymes [BR:
ggh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GHH_c01210 (rpoB)
Transcription machinery [BR:
ggh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GHH_c01210 (rpoB)
DNA repair and recombination proteins [BR:
ggh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GHH_c01210 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AGE20714
LinkDB
All DBs
Position
116936..120511
Genome browser
AA seq
1191 aa
AA seq
DB search
MTGRLVQYGRHRQRRSYARISEVLELPNLIEIQTSSYQWFLDEGLREMFREISPIEDFSG
NLSLEFIDYSLGEPKYTVEEAKERDVTYAAPLRVKVRLINKETGEVKEQDVFMGDFPLMT
ETGTFIINGAERVIVSQLVRSPSVYYSDKVDKNGKRGYSATVIPNRGAWLEYETDAKDVV
YVRIDRTRKLPVTVLLRALGFSSDQEIIDLLGDNEYLRNTLEKDNTDSTEKALIEIYERL
RPGEPPTLENAKNLLASRFFDPKRYDLASVGRYKINKKLHIKNRLFNQRLAETIIDPETK
EVIAEAGAMIDRRTLNRLLPYLEKGVGLQTYRPAEGVVDGDISVQTIKIYAPNDPDGEKV
INVIGNGFIAEDVKHITPADIIASISYFFNLLHGVGDTDDIDHLGNRRLRSVGELLQNQF
RIGLSRMERVVRERMSIQDTNTITPQQLINIRPVIAAIKEFFGSSQLSQFMDQTNPLAEL
THKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSTYAKVNKF
GFIETPYRRVDPETGRVTDQIDYLTADEEDNYVVAQANVPLAEDGTFLEENVVARFRGEN
IVVKRDRVDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLLEPEAPIVGT
GMEYVSAKDSGAAVICKHRGIVERVEAKEIWVRRLIEVDGKEVKGDLDKYRLLKFVRSNQ
GTCYNQRPIVKKGDIVEKGEILADGPSMDKGELALGRNVLVAFMTWDGYNYEDAIIMSER
LVKEDVYTSIHIEEYEAESRDTKLGPEEITRDIPNVGEDALKNLDERGIVRIGAEVKDGD
LLVGKVTPKGMTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVLDVKVFNREDGDE
LPPGVNQLVRVYIVQKRKISEGDKMAGRHGNKGVISRILPEEDMPFLPDGTPIDIMLNPL
GVPSRMNIGQVFELHLGMAAKKLGLHIASPVFDGATEEDVWNILEEAGMARDAKTVLYDG
RTGEPFDNRVSVGIMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEV
WALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGENIPEPGVPESFKVLIKELQSLGM
DVTILTSDEQEINMENFDDDDDDHAPDAIMVDVKPAEREEAGEEKDAVTKE
NT seq
3576 nt
NT seq
+upstream
nt +downstream
nt
ttgacaggccgactagttcaatacgggcgacaccgccaacgcagaagctatgcacgcatc
agcgaagtgctggaattgccgaacttgatcgaaattcaaacgtcctcctaccaatggttt
ctcgatgaagggttgcgggaaatgtttagggaaatttccccgattgaagacttttccggc
aatctctcgcttgaatttatcgactatagtttaggagaaccgaaatatacggtcgaagag
gcgaaagaacgcgacgttacatatgcggcgccgcttcgcgtcaaagttcgcctgatcaat
aaagaaacgggcgaagtgaaggaacaagacgtgtttatgggcgattttccgctcatgacg
gaaaccggaacgtttattatcaatggggcggaacgcgtcatcgtttcccagctcgtccgt
tcgccaagcgtctattacagcgacaaagttgataaaaacggcaaacgcggctactcggcg
acagtgattccgaaccgcggcgcatggcttgaatatgaaaccgatgcgaaagacgtcgtt
tacgttcgcatcgaccgcacccgtaaactgccggttacggtgcttctccgtgcgcttggg
ttcagctccgaccaagaaatcatcgatctgctcggtgacaacgaatacttgcgcaatacg
cttgaaaaagataataccgacagcacggaaaaagcgttgattgaaatttacgagcgtctt
cgtccgggagagccgccgacgcttgagaatgcgaaaaatttgctggcgtcgcgctttttt
gatccgaagcgctatgacttggcgagcgtaggccgttataaaatcaataaaaaacttcat
attaaaaaccgcctgttcaatcagcggctcgcggaaacgatcattgatcccgaaaccaag
gaagtcatcgccgaagctggagcgatgatcgaccgccgaacgctgaatcgcctgctcccg
tatttggaaaaaggggtcggcttacagacataccgcccggccgaaggggtggtggacggg
gacatttcggtgcaaacgatcaaaatttatgccccgaatgacccggatggcgaaaaagtg
atcaacgtcatcggcaacggcttcatcgccgaggatgtcaaacatattacaccggctgac
atcattgcgtcgatcagctatttcttcaacttgctccacggcgtcggcgatacggatgac
atcgaccatttaggcaaccgccgcctccgttcggtcggcgaactattgcaaaaccaattc
cgcatcggcctgtcgcgcatggagcgcgtcgtgcgcgagcgcatgtcgatccaagatacg
aacacgattacgccgcagcagctgatcaacatccgcccagtgatcgcggcgatcaaagag
tttttcggcagctcgcagctgtcacagttcatggatcaaacgaacccattggccgaactg
acgcacaagcggcgtctgtccgcgcttggccctggcggattgacacgtgagcgcgctggg
tttgaggtgcgcgacgttcactattcgcactacgggcggatgtgtccgattgaaacgccg
gaaggtccgaacatcggactcatcaactcgctgtccacttacgcgaaagtgaacaagttc
ggctttattgaaacgccataccggcgcgtcgatccggaaacagggcgggtgacggaccaa
atcgattatttgacagccgatgaagaggacaattacgttgtagcacaggcgaacgtaccg
cttgcggaggacggcacgttccttgaagaaaacgttgtcgcccgtttccgcggcgagaac
atcgtcgtcaagcgcgatcgcgtcgactacatggacgtttcgccgaagcaagtcgtctcg
gcagcgacagcgtgcatcccatttttggaaaacgacgactcgaaccgcgcgctgatggga
gcgaacatgcagcggcaagccgtgccgctgttggaaccggaagcgccgatcgttggcacg
gggatggagtatgtttcggcgaaagactcgggcgcagcggtcatttgcaagcaccgcggc
atcgtcgagcgcgtcgaagcaaaggaaatttgggtgcgtcggctgattgaagtggacggc
aaagaagtcaagggtgatctagataaatatcggttgctgaaattcgttcgttcgaaccaa
ggcacgtgctacaaccagcggccgatcgtgaaaaaaggcgatatcgttgagaagggcgaa
attttggccgatggcccgtcgatggataagggcgaattggcgcttggccgcaatgtgctt
gtcgcctttatgacatgggacggttacaactacgaagacgcgatcatcatgagcgaacgg
ctcgtcaaagaagacgtgtatacatccattcatattgaagagtatgaagccgaatcgcgc
gatacgaaactcggtcctgaagaaattacgcgcgacattccaaacgtcggcgaggatgcg
ctgaaaaacttggatgaacgcggcatcgtccgcatcggcgcagaagtgaaagacggcgac
ttgctcgtcggcaaagtgacgccaaaaggaatgaccgagctgacggcggaagagcggctt
ttgcacgcgatcttcggcgaaaaagcgcgcgaggtgcgtgatacgtcgttgcgcgtcccg
cacggcggcggcggcatcgtccttgacgtgaaagtgttcaaccgcgaagacggcgacgag
cttccgccgggtgtcaatcaactggtgcgcgtctatattgtgcaaaagcggaaaatttcc
gagggcgacaaaatggcaggccgccacggaaacaaaggggttatttcccgcattttgccg
gaggaagatatgcccttcttgccggatggcacgccgattgacatcatgttaaacccactc
ggcgttccgtcgcggatgaacatcgggcaagtatttgagctgcatcttggcatggcggcg
aaaaaacttggcttgcatatcgcttccccagtctttgacggagcgacggaggaagatgtt
tggaacattcttgaagaagccggcatggcgcgcgatgccaaaacggtgctgtatgacggg
cggacgggcgaaccgtttgacaaccgcgtgtcggtcgggatcatgtacatgatcaagctt
gcccacatggtcgacgacaaactccacgctcgctcgaccggcccgtactcgcttgtcact
caacagccgcttggcggcaaggcgcagttcggcggccagcgctttggtgagatggaagta
tgggcgcttgaggcgtatggggcggcatacacgctgcaagaaattttgaccgtcaagtcc
gacgatgtcgtcggccgtgtcaaaacgtacgaggcgatcgtcaaaggggaaaacattccg
gagccgggtgtgccggagtcgtttaaagtgttgatcaaagagctgcaaagcttgggcatg
gacgtcacgattttgacgagcgatgaacaagaaatcaacatggaaaactttgatgatgat
gatgatgaccatgcaccggatgccatcatggtggacgtcaaaccggccgaacgggaagaa
gccggcgaagagaaagatgcggtgacgaaagaataa
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