Geobacillus sp. GHH01: GHH_c01220
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Entry
GHH_c01220 CDS
T02455
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ggh
Geobacillus sp. GHH01
Pathway
ggh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ggh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GHH_c01220 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ggh03021
]
GHH_c01220 (rpoC)
03400 DNA repair and recombination proteins [BR:
ggh03400
]
GHH_c01220 (rpoC)
Enzymes [BR:
ggh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GHH_c01220 (rpoC)
Transcription machinery [BR:
ggh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GHH_c01220 (rpoC)
DNA repair and recombination proteins [BR:
ggh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GHH_c01220 (rpoC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_3
RNA_pol_Rpb1_2
RNA_pol_Rpb1_4
Peptidase_M23
BSH_YknX
Apocytochr_F_C
Phage_T7_55
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
AGE20715
LinkDB
All DBs
Position
120604..124203
Genome browser
AA seq
1199 aa
AA seq
DB search
MLDVNKFEYMKIGLASPEKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRALEEVIYFASYVVTDPGDTPLEKKQLLSEKEYRAYREKYGQSFQASMGAEAIKKLLQ
DIDLDKEVAALKEELKTAQGQRRARIIKRLEVLEAFRSSGNDPAWMVLDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPNIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPKE
MALELFKPFVMKELVERGLAHNIKSAKRKIERVHPEVWDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTMEREGAIGEGMVFKDTDEALLAYHNGYVHLHSRIAIH
AGSLKNETFTEEQNNKLLLTTVGKLIFNEILPNSFPYINEPTTENIEGRTPDKYFLDKGV
NVREEIRKRELVPPFKKKVLGQIIAEVFKRFKITETSKMLDRMKDLGFQYSTKAGITIGV
ADIVVLPEKQEILDEAQAKVDTVLKQFRRGLITDEERYERVISIWSAAKDKIQDRLMKSL
DKRNPIFMMSDSGARGNASNFTQLAGMRGLMANPAGRIIELPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIVREEDCGTDRGILARALTDGTEVVVKLE
ERLVGRYAHKTVRHPETGEVIVRKDEMITEDIANEIMKAGITEVWIRSVFACNTRHGVCK
KCYGRNMATGMDVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVQELF
EARNPKGQAVISEIDGTVISINKTRDNQYEVVVQGEVETRTYVAPYNARLKVEEGQRVER
GQELTEGSVDPKQLLRVRDITSVQEYLLREVQKVYRMQGVEISDKHIEVMVRQMLRKVRV
IDAGDTDVLPGTLLDVHQFTDVNAKALREGKRPATARQVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMARYRKVKPAVKKETASDTVSSK
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
ttgctggatgtcaataaatttgagtacatgaaaattgggctcgcttccccggagaaaatt
cgttcttggtcgtatggcgaagtcaaaaagccagagacaatcaactatcggacgttaaag
ccggaaaaagacggcttgttttgcgagcgcattttcggtccgacgaaagactgggaatgc
cattgcggcaaatataaacgcgttcgctacaaaggcgtcgtctgcgaccgttgcggcgtc
gaagtgacgcgctcgaaagtccgccgcgaacggatgggccatatcgagctggctgccccg
gtttcgcatatctggtatttcaaaggcatcccgagccggatggggttggttcttgacatg
tcgccgcgggcgctcgaagaggtcatttattttgcatcctatgtcgtcaccgacccgggt
gatacgccgcttgagaaaaagcagctgttgtcggaaaaggaataccgcgcctatcgcgag
aagtacggtcaatcgttccaagcgtcgatgggggcggaggcgatcaaaaagctgctccaa
gacattgatttggataaagaggtggccgcgctgaaagaagagctgaaaacggcgcaaggg
caacggcgcgcccgcatcattaagcggcttgaagtgcttgaagcgttccgcagttcaggg
aacgacccggcatggatggtgcttgatgtactgccggtcattccgccggagttgcgcccg
atggttcagcttgacggcgggcggtttgcaacatcggatttgaacgatttgtaccgccgc
gtcatcaaccgtaacaaccggctgaaacggctgcttgatctcggtgcgccgaacattatc
gtccaaaatgagaagcggatgctgcaagaggcggttgatgctttgatcgataacggccgc
cgcggccgtccggtgaccggtccggggaaccgtccgttaaaatcgctttcccacatgctg
aaagggaagcaagggcgcttccggcaaaacttgctcggcaaacgcgttgattattccggc
cgctccgtcatcgtcgtcggcccaaacttaaaaatgtatcaatgcgggctgccgaaagaa
atggcgctagagttgttcaagccgttcgtcatgaaggagcttgtcgagcgggggttggcg
cataacattaaaagcgcgaaacggaaaatcgagcgcgtccatccggaagtgtgggatgtg
cttgaagatgtcatcaaagaacatccggtgctgttaaaccgcgctccgacgctgcaccgt
ctcggcattcaggcgtttgaaccaacgcttgtggaagggcgggcgatccgtcttcatccg
cttgtttgcacggcgtacaacgctgactttgacggcgaccaaatggcggtgcacgtgccg
ctgtcggctgaggcgcaagccgaagcgcgcttgttgatgttggcggcgcaaaacattttg
aacccgaaagacgggaagccggtcgtgacaccatcacaagacatggtgttgggcaactac
tacttgacgatggagcgcgagggagccatcggtgaaggcatggtgttcaaagacacggac
gaggcgctgcttgcttaccataacggctacgtccatctccattcgcgcatcgccattcat
gccggttcgctgaaaaacgaaacgtttaccgaagagcaaaacaacaagctgctcttaacg
accgtcggaaagctcattttcaacgaaattttgccgaattcgttcccgtacatcaacgag
ccgacgacggaaaacattgaagggcggacgccggacaagtacttccttgacaaaggggtc
aacgtgcgcgaagaaattcgcaagcgcgaactcgtgccgccgtttaagaaaaaagtgctc
gggcaaattatcgctgaagtgttcaaacggttcaaaatcaccgaaacatcgaagatgctc
gaccgcatgaaagaccttggcttccaatattcgacgaaggccggcatcacgatcggcgtg
gccgatatcgtcgtcctgccggaaaaacaagaaattttggatgaagcgcaagcgaaagtc
gatacggttttgaagcagttccgccgcgggttgattaccgacgaagagcggtacgagcgc
gtcatctccatctggagcgcggcgaaagacaaaattcaagaccggttgatgaagtcgctt
gataaacgcaacccgatctttatgatgagcgattccggagcgcgcgggaacgcgtcgaac
tttacgcagcttgcggggatgcgcggtttgatggccaacccggccggccggatcattgag
ctgccgatcaagtcgtcgttccgcgaaggcttgacggtattggaatactttatctcgacg
cacggcgcgcgaaaaggattggcggatacggcgctcaaaacggccgactcaggctatctc
acgcgccgccttgtcgacgtggcccaagacgtcatcgtccgcgaagaagattgcggcacc
gaccgcggcattttggcgcgggcgctgacggatggcacggaagttgtcgtcaagcttgaa
gagcggcttgtcggccgctatgcgcacaaaacggtgcgccatccggaaacgggcgaagtg
atcgtccgcaaagacgagatgatcaccgaagatatcgccaatgagatcatgaaagccggc
attacggaagtatggattcgctccgtattcgcctgcaacacgcgccatggcgtctgcaaa
aaatgttacggccgcaacatggcgaccggcatggacgtcgaagttggcgaagccgtcggc
attatcgccgctcagtcgatcggcgagccgggcacgcagctgacaatgcggacgttccat
acaggcggcgtcgccggcgacgatatcactcaaggtttgccacgggtgcaagagctgttt
gaagcgcgcaacccgaaagggcaagcggtcatttcggaaattgacggcacggtcatctcg
attaacaaaacgcgtgacaaccaatatgaagttgtcgtgcaaggtgaggttgaaacgcgg
acatatgtagcgccgtacaatgcgcggctgaaagtcgaagaaggtcagcgcgtcgaacgc
ggccaagagctgacagaaggctcggtcgacccgaaacagttgttgcgcgtgcgcgatatt
acatccgtgcaagagtacttgctccgcgaagtgcaaaaagtgtaccggatgcaaggggta
gaaatcagcgacaagcatatcgaggtcatggtgcggcaaatgctgcgcaaagtgcgcgtc
atcgatgccggcgacaccgatgtgctgccgggcacgctgttggatgtccaccagtttacg
gatgtcaacgccaaagctcttcgcgaagggaaacggccggcgacggcccgccaggtgttg
ctcggcatcacgaaagcgtcgcttgagacggattcgttcttgtcggctgcttcgttccaa
gaaacgacgcgcgtcttgacggatgcggccatcaaaggaaaacgtgatgaactgcttggc
ttgaaggaaaacgtcattatcggcaaactcgtcccggctggaaccggtatggcccgctac
cggaaagtgaagccggccgtcaaaaaggaaacggctagcgacacggtgtcttccaaataa
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