Geobacillus sp. GHH01: GHH_c11360
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Entry
GHH_c11360 CDS
T02455
Symbol
topA1
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ggh
Geobacillus sp. GHH01
Brite
KEGG Orthology (KO) [BR:
ggh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ggh03032
]
GHH_c11360 (topA1)
03400 DNA repair and recombination proteins [BR:
ggh03400
]
GHH_c11360 (topA1)
Enzymes [BR:
ggh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
GHH_c11360 (topA1)
DNA replication proteins [BR:
ggh03032
]
Prokaryotic type
DNA Topoisomerases
GHH_c11360 (topA1)
DNA repair and recombination proteins [BR:
ggh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
GHH_c11360 (topA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Zn_ribbon_RPB9
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
AGE21674
UniProt:
L7ZX10
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All DBs
Position
1108717..1110792
Genome browser
AA seq
691 aa
AA seq
DB search
MSDYLVIVESPTKAKTIERYLGKKYTVKASMGHVRDLPKSQMGVDIDHGYEPKYITIRGK
GQVIKELKTAAKKAKKVFLAADPDREGEAIAWHLAHMLDLDIHSDCRVVFHEITKDAIQQ
SFQKPRAINMNLVDAQQARRVLDRLVGYNISPLLWKKVKKGLSAGRVQSVALRLIIDRER
EIREFQPEEYWTIQATFQKEGETFAASFYSIDGQKRDLKTEADVKAVLDRLNGTAFAVKT
VTKRERKRSPVPPFTTSSLQQEAARKLNFRTKKTMMIAQQLYEGIDLGSEGTVGLITYMR
TDSTRVAETAQQEAAAYIEATFGAMYVNQEKRKEKKSTNAQDAHEAIRPTSAFRDPDKVK
PYLTRDQFRLYKLIWERFIASQMAAAVLDTMSVELENNGVVFRASGSKVKFPGFMKVYIE
GTDDQAEEQDRILPDLEEEETVESETIESKQHFTQPPPRYTEARLVKTLEELGIGRPSTY
APTLDTIQKRNYVVLENKRFVPTELGEIVVELMLEFFPEIIDVEFTAKMEKELDEIEEGK
VEWIKVVDEFYREFEKRLKVAEKEMRAVEIKDEPAGIDCEVCGSPMVYKMGRFGKFIACS
NFPECRHTKPIVKEIGVKCPKCREGNIVERSTKRKRVFYGCDRFPDCDFVSWDKPLARPC
PKCAGLLVEKELKKGVQVQCTACDYEERLEA
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atgtcagactacttagttatcgtcgaatcgccaacgaaagcgaagacgatcgaacgatac
ttgggaaaaaaatatacagtcaaagcgtcgatgggccacgtccgcgatttgccaaaaagc
caaatgggcgttgatatagaccacggctacgagccgaaatacattacgatccgcggcaaa
ggccaggtgatcaaagagttgaaaacggcggcgaaaaaagcgaaaaaagtgtttcttgcc
gccgaccccgatcgcgaaggagaggcgattgcctggcatttggcccacatgctcgatctg
gacattcactctgattgccgcgttgtctttcatgagatcacgaaggatgcgattcagcaa
tcgtttcaaaagccgcgcgcgatcaatatgaatcttgttgacgcccagcaggcgcggcgc
gtgctcgaccgcctcgtcggctataacatcagcccgctcttatggaaaaaggtgaaaaaa
ggattaagcgccggccgcgtccaatcggtggcgctgcgcctcatcatcgatcgggaacga
gaaattcgcgaatttcagccggaagaatattggacgattcaagcgacgtttcaaaaagaa
ggagagacgtttgccgcctcgttttacagtattgacggacaaaagcgcgatttaaagacg
gaggcggatgtgaaagccgtgctggaccgcttaaacggaacggcatttgcggtgaaaacg
gtgacaaaacgagagcgcaagcgcagccccgtgccgccgtttacgacgtcgtcgcttcag
caggaagcggcgcgcaaactgaatttccggacgaaaaagacgatgatgatcgcccagcag
ctgtacgaaggaatcgatcttggcagcgaagggacggtcggtttgatcacgtatatgcgc
accgattcaacgcgcgtcgccgagacggcgcagcaagaggcggcggcatatatcgaggcg
acgttcggcgctatgtatgtcaaccaggaaaagcggaaagagaagaaaagcacgaacgcc
caagacgcccatgaagcgatccgcccgacatcggcatttcgcgatccggacaaagtgaaa
ccgtatttgacgcgcgaccagtttcggttgtataaactcatttgggaacggttcatcgcc
agtcaaatggcggccgccgtgcttgacaccatgagcgtcgagttggaaaacaacggtgtc
gtgttccgcgccagcggctcgaaggtgaaatttccagggtttatgaaagtgtatattgaa
ggaacggacgatcaagcggaagagcaggaccgtatcctcccggatttggaagaagaggaa
acagttgagagcgaaacgatcgaatcgaagcagcactttacgcagccgccgccgcgctac
acggaagcccgcctcgtcaaaacgttggaggaactcggcatcggccgcccgtcgacgtat
gccccgacgcttgatacgatccaaaaacgcaactatgtcgtccttgagaacaagcggttt
gtcccgaccgagctcggcgaaatcgttgtcgagctgatgctcgaatttttcccggaaatt
atcgatgtcgagtttacggcgaaaatggaaaaagaattggacgaaattgaagaagggaaa
gtggaatggatcaaagtcgtcgacgagttttaccgcgaatttgaaaaacggttgaaagtg
gcggaaaaagaaatgcgcgcagttgagattaaggatgagccggccggcattgactgcgag
gtgtgcggcagtccgatggtgtacaaaatgggccgtttcggcaagtttatcgcctgctcg
aattttccggaatgccgccatacgaagccgattgtcaaagaaatcggcgtcaagtgcccg
aaatgccgcgagggcaacatcgtcgagcgcagcacgaaaagaaagcgggtgttttacggc
tgcgaccgtttcccggattgcgacttcgtctcgtgggataaaccgctcgcccgcccgtgt
ccgaaatgcgcggggctgcttgtggagaaagagctgaaaaaaggtgtgcaagtgcaatgc
acggcgtgcgactatgaagagcggctagaagcttga
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